An association between − 866G/A polymorphism in the promoter of UCP2 and obesity: A meta-analysis

− 866G/A polymorphism in the promoter of UCP2 gene has been reported to be associated with obesity, but the results remain inconclusive. To assess the relation of UCP2 − 866G/A polymorphism and obesity susceptibility, a meta-analysis was performed. PubMed, ISI, Wanfang database, VIP and CBM were searched to identify relevant studies up to July 31, 2012. Odds ratios (OR) and 95% confidence interval (95% CI) were pooled using fixed or random effect models. Subgroup analysis was performed by ethnicity (categorized as Asian and European). Heterogeneity and publication bias evaluation were performed to validate the credibility. Meta-regression and the ‘leave one out’ sensitive analysis were used to explore the potential sources of between-study heterogeneity. 14 studies were included in this meta-analysis. After exclusion of articles that deviated from the HWE in controls, and were the key contributors to between-study heterogeneity, the meta-analysis showed a significant association of the A allele with reduced risk of obesity in overall analysis and in European in the dominant, codominant and additional models. In Asian, no significant association was found between the − 866G/A in UCP2 gene and obesity susceptibility. The meta-analysis suggested that UCP2 − 866G/A polymorphism was associated with obesity. The A allele may be an important protective factor for obesity in European, but not in Asian. Further studies are needed to elucidate the relationship.     

Involvement of INF-γ functional single nucleotide polymorphism +874 T/A (rs2430561) in breast cancer risk

According Global Cancer Statistics 2020 GLOBOCAN estimates female breast cancer was found as the most commonly diagnosed cancer, with an estimated 2.3 million new cases (11.7%), and the fourth leading cause (6.9%) of cancer death among women worldwide. Identification of new diagnostic marker sharply characterize the tumor feature is intensive need. The present work was performed to investigate the involvement of the INF-γ + 874 T/A gene polymorphism in different breast cancer prognostic factors. Polymorphism detection analysis was performed on 163 subjects from breast cancer patients, 79 with inflamed cells of breast patients and 144 controls. The gene polymorphism was detected using the amplification refractory mutation system- polymerase chain reaction method (ARMS-PCR). The distribution of INF-γ T + 874A gene polymorphism shows strong significant association between INF-γ + 874 T/A genotypes TT in BC patients (ORTT: 6.41 [95% CI = 2.72–15.1] P < 0.0001) as well as strong significant association regarding T allele (ORT: 1.99 [95% CI = 1.43–2.76] P < 0.0001) when compared to the healthy control. In ICB group the strong association was noted with INF-γ + 874 T/A genotypes AT genotype (ORAT: 2.28 [95% CI = 1.22–4.29] P = 0.007). From the different histological BC hormonal markers the human epidermal growth factor receptor 2 (HER2) was showing significant association in INF-γ + 874 T/A genotypes TT (P = 0.03) and recessive model (TT versus AA + AT P = 0.03). Concerning different BC prognostic models, the poor prognostic one of luminal B, (ER^+ve PR^+ve Her2^+ve) show significant association in the host INF-γ + 874 T/A genotype (TT, P = 0.03) and recessive model (TT versus AA + AT P = 0.02) when compared to the good prognostic hormonal status luminal A model, (ER^+ve PR^+ve Her2-ve). It seems that this is the first study that interested in correlate the INF-γ + 874 T/A gene polymorphisms in Egyptian BC patients. T allele, TT genotype and recessive model of the INF-γ + 874 T/A gene variants were documented as risk factors for BC pathogenesis. It may be used as practical biomarker to guide the BC carcinogenesis and risk process.     

Water sources of Populus euphratica and Tamarix ramosissima in Ejina Delta,the lower reaches of the Heihe River,China

Aims We aim to evaluate the water sources of typical riparian arbor species (Populus euphratica) and shrub species (Tamarix ramosissima), and analyze the spatial and temporal dynamics of plant water source in Ejina Delta, the lower reaches of the Heihe River, China.Methods Eight sampling sites were selected in the riparian zones along the East River and West River in Ejina. The plant xylem water, soil moisture, rainwater, stream water and groundwater were taken and pretreated during the growing season in 2015-2016, and the stable oxygen isotope ratio (δ¹⁸O) for each water sample was measured. The δ¹⁸O of plant xylem water and soil moisture were compared to estimate the dominant depth of root water uptake, and the linear-mixed model called “IsoSource” were applied to determine plant water sources and quantify their proportions.Important findings This study indicated that the main recharge sources for P. euphratica and T. ramosissima were stream water and groundwater. The contributions of rain water to them was negligible due to the limited amount and the shallow infiltration depth of local rainfall. As affected by groundwater level fluctuation, soil physical properties, as well as lateral and vertical recharge of stream water on soil moisture, the dominant depth of root water uptake spatially varied. However, the relative contributions of stream water or groundwater to plant water sources did not change significantly across space. Populus euphratica used more stream water (68%), while T. ramosissima used more groundwater (65%). Plant water sources were sensitive to environmental flow controls. The contributions of stream water to the water sources of the two species went up to 84% and 48% for P. euphratica and T. ramosissima respectively during the discharge period, but dropped to 63% and 30% during the non-discharge period. On the other hand, the contributions of groundwater decreased to 16% and 52% during the discharge period, but increased to 37% and 70% during non-discharge period. It is noteworthy that the high similarity of δ¹⁸O between stream water and groundwater due to extensive water exchange in the riparian zone made increase the uncertain in quantifying plant water sources.     

PSCA gene variants (rs2294008 and rs2978974) confer increased susceptibility of gallbladder carcinoma in females

Background and aim

PSCA is a tissue specific tumor suppressor or oncogene which has been found to be associated with several human tumors including gallbladder cancer. It is considered to be involved in the cell-proliferation inhibition and/or cell-death induction activity. Therefore, we aimed to investigate the role of PSCA gene polymorphisms in gallbladder cancer risk in North Indian population.

Methodology

A total of 405 gallbladder cancer patients and 247 healthy controls were included in the case–control study for risk prediction. We examined the association of two functional SNPs, rs2294008 and rs2978974 in PSCA gene by genotyping using Taqman allelic discrimination assays. Statistical analysis was done using SPSS software, version 17. Linkage disequilibrium and haplotype analysis was done with the help of SNPstats software. FDR test was used to correct for multiple comparisons.

Results

No significant associations of rs2294008 and rs2978974 genetic variants of the PSCA gene were found with GBC risk at allele, genotype or haplotype levels. Stratifying the subjects on the basis of gallstone also did not show any significant result. However, on gender stratification, we found a significant association of T_rs2294008-G_rs2978974 haplotype with higher risk of GBC in females (FDR Pcorr = 0.021, OR = 1.6). In contrary, T_rs2294008-A _rs2978974 haplotype conferred significant lower risk in males (FDR Pcorr = 0.013; OR = 0.25).

Conclusions

These findings suggest that PSCA genetic variants may have a significant effect on GBC susceptibility in a gender specific manner.     

Benthic community responses to nutrient enrichment and predator exclusion: Influence of background nutrient concentrations and interactive effects

Potential community effects of nutrient enhancement are a topic of theoretical interest and increasing management concern in coastal marine systems. While increased nutrient levels may lead to increased microalgal production and biomass, studies have provided variable evidence regarding the existence of upward cascade effects on macrofauna. In benthic marine communities, limitation by predation or factors preventing recruitment response may contribute to weak coupling between resource availability and macrobenthos abundances. We conducted blocked nutrient addition and predator exclusion experiments in the intertidal of two estuaries that varied in background nutrient concentrations (Cape Fear and White Oak, southeastern North Carolina). Benthic community comparisons were also made among these and two other North Carolina estuaries to examine correlations in distribution patterns. Cape Fear, which had the highest background nitrogen and phosphorus concentrations, also had highest ambient benthic microalgal biomass. There was no significant response of microalgal biomass to local nutrient additions in Cape Fear and only one macrofaunal taxon during one season exhibited abundance responses to nutrient additions. White Oak, with lower background nutrient levels, was characterized by significant microalgal responses to nutrient additions and significant macrofauna abundance responses for 50% of the species examined during summer experiments. However, all of these macrofauna declined in abundance with nutrient enhancement while biomass remained constant or significantly increased with nutrient additions. This suggests a complex response of macrofauna to nutrient additions in this estuary with greater biomass per individual but a corresponding decline in abundances. Top-down/bottom-up interactive effects were observed for haustoriid amphipods, which were uncommon or absent when predators had access, but exhibited strong biomass responses to nutrient enhancement when predators were excluded. These results support a growing body of literature that indicates the importance of background conditions in regulating benthic community responses to nutrient enhancement. However, responses may be complex with biomass per individual rather than densities being the primary response variable for some taxa and predator moderation of responses occurring for some taxa but not others.     

On the impulsive controllability and bifurcation of a predator-pest model of IPM

From a practical point of view, the most efficient strategy for pest control is to combine an array of techniques to control the wide variety of potential pests that may threaten crops in an approach known as integrated pest management (IPM). In this paper, we propose a predator-prey (pest) model of IPM in which pests are impulsively controlled by means of spraying pesticides (the chemical control) and releasing natural predators (the biological control). It is assumed that the biological and chemical control are used with the same periodicity, but not simultaneously. The functional response of the predator is allowed to be predator-dependent, in the form of a Beddington-DeAngelis functional response, rather than to have a perhaps more classical prey-only dependence. The local and global stability of the pest-eradication periodic solution, as well as the permanence of the system, are obtained under integral conditions which are shown to have biological significance. In a certain limiting case, it is shown that a nontrivial periodic solution emerges via a supercritical bifurcation. Finally, our findings are confirmed by means of numerical simulations.     

Association between the CYP1A1 T3801C polymorphism and risk of cancer: Evidence from 268 case–control studies

T3801C is a common polymorphism in CYP1A1, showing differences in its biological functions. Case–control studies have been performed to elucidate the role of T3801C in cancer, although the results are conflicting and heterogeneous. Hence, we performed a meta-analysis to investigate the association between cancer susceptibility and T3801C (55,963 cases and 76,631 controls from 268 studies) polymorphism in different inheritance models. We used odds ratios with 95% confidence intervals to assess the strength of the association. Overall, significantly increased cancer risk was observed in any genetic model (dominant model: odds ratio [OR] = 1.14, 95% confidence interval [CI] = 1.09–1.19; recessive model: OR = 1.23, 95% CI = 1.12–1.34; CC vs. TT: OR = 1.31, 95% CI = 1.19–1.45; TC vs. TT: OR = 1.12, 95% CI = 1.07–1.18; additive model: OR = 1.14, 95% CI = 1.09–1.19) when all eligible studies were pooled into the meta-analysis. In further stratified and sensitivity analyses, the elevated risk remained for subgroups of cervical cancer, head and neck cancer, hepatocellular cancer, leukemia, lung cancer, prostate cancer and breast cancer. In addition, significantly decreased colorectal cancer risk was also observed. In summary, this meta-analysis suggests that the participation of CYP1A1 T3801C is a genetic susceptibility for some cancer types. Moreover, our work also points out the importance of new studies for T3801C association in some cancer types, such as gallbladder cancer, Asians of acute myeloid leukemia, and thyroid cancer, where at least some of the covariates responsible for heterogeneity could be controlled, to obtain a more conclusive understanding about the function of the CYP1A1 T3801C polymorphism in cancer development.