Does maritime Antarctic permafrost harbor environmental fungi with pathogenic potential?

We assessed the potentially pathogenic fungi present in Antarctic permafrost and the overlying active layer on King George, Robert, Livingston and Deception Islands in the South Shetland Islands archipelago, maritime Antarctica. Permafrost and active layer sub-samples were incubated at 37 °C to select fungi able to grow inside the human body. A total of 67 fungal isolates were obtained, 27 from the permafrost and 40 from the active layer. These represented 18 taxa of the genera Alternaria, Aspergillus, Curvularia, Penicillium, Rhodotorula and Talaromyces. The majority of fungi detected occurred exclusively either in the permafrost or the active layer at each site. Only Aspergillus thermomutatus, Penicillium cf. chrysogenum and Rhodotorula cf. mucilaginosa were present in both permafrost and active layer samples from the same site. The yeast R. cf. mucilaginosa was recovered from both in at least two sites. The genus Penicillium was the most abundant and widely distributed genus in both permafrost and active layer samples across the sites sampled. All fungal isolates were screened using enzymatic, pH and antifungal assays to identify their virulence potential. Aspergillus hiratsukae, A. thermomutatus and R. cf. mucilaginosa, known human opportunistic fungi, were identified, displayed phospholipase, esterase, proteinase and hemolytic activities. All three also displayed the ability to grow at 40°, 45° and/or 50 °C and resistance to fluconazole and itraconazole; additionally, R. cf. mucilaginosa showed resistance to amphotericin B and viability after 100 d at ?80 °C. A. thermomutatus UFMGCB 17415 killed the entire larvae of Tenebrio molitor in six days and R. cf. mucilaginosa UFMGCB 17448 and 17473 in three and four days, respectively. The melting of maritime Antarctic permafrost as a result of climate change may threaten the release of wild strains of pathogenic fungi geographically isolated for long time, which may in turn be transported within and beyond Antarctica by different biological and non-biological vectors.     

Exploration of Ellsworth Subglacial Lake: a concept paper on the development, organisation and execution of an experiment to explore, measure and sample the environment of a West Antarctic subglacial lake

Antarctic subglacial lakes have, over the past few years, been hypothesised to house unique forms of life and hold detailed sedimentary records of past climate change. Testing this hypothesis requires in situ examinations. The direct measurement of subglacial lakes has been considered ever since the largest and best-known lake, named Lake Vostok, was identified as having a deep water-column. The Subglacial Antarctic Lake Environments (SALE) programme, set up by the Scientific Committee on Antarctic Research (SCAR) to oversee subglacial lakes research, state that prior exploration of smaller lakes would be a “prudent way forward”. Over 145 subglacial lakes are known to exist in Antarctica, but one lake in West Antarctica, officially named Ellsworth Subglacial Lake (referred to hereafter as Lake Ellsworth), stands out as a candidate for early exploration. A consortium of over 20 scientists from seven countries and 14 institutions has been assembled to plan the exploration of Lake Ellsworth. An eight-year programme is envisaged: 3 years for a geophysical survey, 2 years for equipment development and testing, 1 year for field planning and operation, and 2 years for sample analysis and data interpretation. The science experiment is simple in concept but complex in execution. Lake Ellsworth will be accessed using hot water drilling. Once lake access is achieved, a probe will be lowered down the borehole and into the lake. The probe will contain a series of instruments to measure biological, chemical and physical characteristics of the lake water and sediments, and will utilise a tether to the ice surface through which power, communication and data will be transmitted. The probe will pass through the water column to the lake floor. The probe will then be pulled up and out of the lake, measuring its environment continually as this is done. Once at the ice surface, any water samples collected will be taken from the probe for laboratory analysis (to take place over subsequent years). The duration of the science mission, from deployment of the probe to its retrieval, is likely to take between 24 and 36 h. Measurements to be taken by the probe will provide data about the following: depth, pressure, conductivity and temperature; pH levels; biomolecules (using life marker chips); anions (using a chemical analyzer); visualisation of the environment (using cameras and light sources); dissolved gases (using chromatography); and morphology of the lake floor and sediment structures (using sonar). After the probe has been retrieved, a sediment corer may be dropped into the lake to recover material from the lake floor. Finally, if time permits, a thermistor string may be left in the lake water to take time-dependent measurements of the lake’s water column over subsequent years. Given that the comprehensive geophysical survey of the lake will take place in two seasons during 2007–2009, a two-year instrument and logistic development phase from 2008 (after the lake’s bathymetry has been assessed) makes it possible that the exploration of Lake Ellsworth could take place at the beginning of the next decade.     

Deep-Sea Polychaetous Annelida from Central America to the Antarctic Peninsula and South Sandwich Islands

Based on the 1958 Vema cruise and the 1965 Anton Bruun cruise 11 off the west coast of Central America and south through the islands east of the tip of South America, 143 trawl samples were examined for abyssal polychaetous annelida. The cruise tracks designated 7 major areas: Central America (1), Ecuador-Peru (II), Central and Southern Chile (III), Chile and the Magellan Strait (IV), Tierra del Fuego (V), the Island Complex (Falkland, South Georgia and South Sandwich Islands) (VI), the Drake Strait and Antarctic Peninsula (VII). The collections yielded 7,015 individuals and 322 species from 52 families. The relatively small number of species was attributed mainly to sampling effort, collecting gear and processing techniques. Each major area was characterized in terms of the number of individuals, the number of species, mean number of individuals, mean number of species and mean H′, SR, J′ and DI. Species diversity was significantly higher in Central America (I) than in the other areas. The relationships between biotic and abiotic measures (depth and areas of upwelling) were examined. There were no significant associations for the entire data base with depth. Moreover, there was no association between abundance of polychaetes and areas of upwelling which was hypothesized. In fact, relative abundance was highest in the deepest portions of Central America (I) (Guatemala Basin) and Ecuador—Peru (II) (Milne—Edwards Deep) compared to shallower areas closer to areas of upwelling. Quantitative collecting gear and refined processing techniques will be required to more accurately address these relationships. Dominant families were identified in terms of number of species and number of individuals. These families conformed well with world wide generalizations of dominant families. Dominant species were identified based on the Biological Index Value. The top twenty or dominant species for each major area were identified. A number of these dominant species occurred widely throughout the major areas. The dominant species for the entire data set were determined. In general these species were very eurybathic which was consistent with other worldwide depth distributions of abyssal polychaetes. Based on biotic measures (mean number of species, mean H', SR, J′ and DI) and the Simpson and Dice similarity co-efficients, several zoogeographic patterns emerged. The polychaete fauna from Central America (I) to southern Chile (II) formed a relatively homogeneous group. Polychaetes from Central America (I) had affinities with faunas studied off western Mexiko. The Chile and Magellan Strait (IV) area seemed to be a transition area which yielded to another relatively homogeneous fauna comprising areas V—VII. The latter fauna belonged to an Antarctic polychaete fauna which was documented earlier in other studies with a larger data base and more sophisticated analysis. It is hoped that the present study will help to provide a start to fill the zoogeographic gap of this enormous and bathymetrically diverse area.     

EVOLUTIONARY RELATIONSHIPS OF CULTIVATED ANTARCTIC OSCILLATORIANS (CYANOBACTERIA)

The evolutionary relationships of cultivated psychrophilic and psychrotolerant polar oscillatorians were examined, based on small subunit rDNA sequences. Psychrophilic oscillatorians from the Antarctic were affiliated in one well-supported clade, which also includes two Arctic strains. Two of the Antarctic psychrophiles contain an 11-nucleotide insertion that is identical to, and previously only described in, an Arctic oscillatorian. The psychrotolerant phenotype, conversely, has arisen multiple times in the cyanobacterial lineage, and psychrotolerant strains are sometimes most closely related to organisms of temperate latitudes. These findings support the hypothesis that oscillatorians in both polar regions originated from more temperate species. Furthermore, morphological designations of these filamentous cyanobacteria often do not have phylogenetic significance.     

Structure and function of the Gondwanian hemoglobin of Pseudaphritis urvillii, a primitive notothenioid fish of temperate latitudes

The suborder Notothenioidei dominates the Antarctic ichthyofauna. The non-Antarctic monotypic family Pseudaphritidae is one of the most primitive families. The characterization of the oxygen-transport system of euryhaline Pseudaphritis urvillii is herewith reported. Similar to most Antarctic notothenioids, this temperate species has a single major hemoglobin (Hb 1, over 95% of the total). Hb 1 has strong Bohr and Root effects. It shows two very uncommon features in oxygen binding: At high pH values, the oxygen affinity is exceptionally high compared to other notothenioids, and subunit cooperativity is modulated by pH in an unusual way, namely the curve of the Hill coefficient is bell-shaped, with values approaching 1 at both extremes of pH. Molecular modeling, electronic absorption and resonance Raman spectra have been used to characterize the heme environment of Hb 1 in an attempt to explain these features, particularly in view of some potentially important nonconservative replacements found in the primary structure. Compared to human HbA, no major changes were found in the structure of the proximal cavity of the alpha-chain of Hb 1, although an altered distal histidyl and heme position was identified in the models of the beta-chain, possibly facilitated by a more open heme pocket due to reduced steric constraints on the vinyl substituent groups. This conformation may lead to the hemichrome form identified by spectroscopy in the Met state, which likely fulfils a potentially important physiological role.     

Unexpected foraminiferal diversity revealed by small-subunit rDNA analysis of Antarctic sediment

Studies of benthic Foraminifera typically rely on the morphological identification of dried specimens. This approach can introduce sampling bias against small, delicate, or morphologically ambiguous forms. To overcome this limitation, we extracted total DNA from sediment followed by PCR using group- and species-specific primers. Phylogenetic analyses revealed that approximately ninety percent of the PCR products represented previously undescribed sequence types that group with undersampled members of the allogromiid Foraminifera. We also used a modification of this technique to track individual species in sediment fractions too fine for normal morphological identification, and to confirm species placement of morphologically ambiguous foraminiferans. We were able to identify the DNA of several large foraminiferal species in fine fractions in a seasonally-dependent manner, indicating that in some seasons the majority of the standing stock of these species exists as gametes/juveniles. The approach outlined here represents a powerful strategy for exploring the total diversity of benthic foraminiferal communities.     

Cladistic biogeography and the art of discovery

Aims

Cladistic biogeography is about discovering geographical congruence. The agreement of several taxon‐area cladograms (TACs) rarely yields a perfect result. Areas may overlap, taxa may not be evenly distributed, and thus, ambiguity may be prevalent in the data. Ambiguity is incongruence and may be resolved by reducing paralogy and resolving potential information. Recently, several new approaches in cladistic biogeography [i.e. Brooks parsimony analysis (BPA), Assumption 0] interpret ambiguity as congruence. These methods are problematic, as they are generational. Methods constructed under the generation paradigm are flawed concepts that are immunized from falsifying evidence. A critique of modified BPA reveals that taking an evolutionary stance in biogeography leads to flaws in implementation.

Methods

Area cladistics is a new development in cladistic biogeography. Area cladistics adopts paralogy‐free subtree analysis using Assumption 2, to discover the relative positions of continents through time.

Results

Geographical congruence is the result of allopatric (geographical) speciation. Vicariance, dispersal and combinations of both, are recognized causes for allopatric speciation. Area cladistics highlights the concept that all these events occur in response to geological changes (e.g. continental drift) either directly, by geographical boundaries, or indirectly, at the level of ocean currents. Samples of chosen examples all respond to the geological process. The examples include Ordovician–Silurian and Lower Devonian trilobites to yield a general areagram which is a representational branching diagram that depicts the relationships of areas.

Main conclusion

Finding one common biogeographical pattern from several unrelated groups is a qualitative approach to interpret the positions of continental margins through time. Area cladistics is not a substitute for palaeomaps that are derived from palaeomagnetic data, but general areagrams adding to the body of knowledge that yields more precise interpretations of the earth's past.

     

Radioactivity as a Significant Energy Source in Prebiotic Synthesis

Radioactivity in the continental crust (due mainly to the isotopes ²³⁸U,²³⁵U, ²³²Th and ⁴⁰K), as a energysource for chemical evolution in the early Archean (between 3.5 and 4 Ga bp), is reviewed.The most important radioactive sourcein the continental crust is due to theproduction and accumulation of radioactivegases within the crust voids (porosity). Thestudy of such mechanism has allowed us toreach a deeper understanding about the nature of the radioactive source and to describe itsbehavior, particularly with regard to prebiotic chemical evolution. An effectivetotal energy of 3 × 10^{18 Ja -1} hasbeen obtained for a depth of 1 km, 4 Ga ago. If a depth of 30 km is taken, the obtained valueis almost equal to the UV solar energyradiation (<150 nm). Within thevoids the radioactive source of thecontinental crust played a relevant role inprebiotic synthesis. In uraniumdeposits of the same age, the role ofradiactivity must have been even more relevantin favoring chemical evolution.     

The microbial composition of three limnologically disparate hypersaline Antarctic lakes

16S rRNA clone library analysis was used to examine the biodiversity and community structure within the sediments of three hypersaline Antarctic lakes. Compared to sediment of low to moderate salinity Antarctic lakes the species richness of the hypersaline lake sediments was 2-20 times lower. The community of Deep Lake (32% salinity, average sediment temperature -15 degrees C) was made up almost entirely of halophilic Archaea. The sediment communities of two meromictic hypersaline lakes, Organic Lake (20% salinity, -7 degrees C) and Ekho Lake (15% salinity, 15 degrees C) were more complex, containing phylotypes clustering within the Proteobacteria and Cytophagales divisions and with algal chloroplasts. Many phylotypes of these lakes were related to taxa more adapted to marine-like salinity and perhaps derive from bacteria exported into the sediment from the lower salinity surface waters. The Ekho Lake clone library contained several major phylotypes related to the Haloanaerobiales, the growth of which appears to be promoted by the comparatively high in situ temperature of this lake.     

Regulation of food provisioning in the Antarctic petrel; the importance of parental body condition and chick body mass

1. Two hypotheses may explain how long-lived seabirds regulate the food provisioning to their chick. The fixed level of investment hypothesis states that the parents provide food for their chick according to an intrinsic rhythm, independent of their chick's need. The flexible investment hypothesis states that the parents adjust their food provisioning both according to their chick's and their own need.
2. We tested how the Antarctic petrels adjust the food-provisioning according to their own body condition or to their chick's need. First, we selected parents in poor and good body condition. Then we gave all parents randomly a chick of different body mass, but of the same age. We then measured the chicks daily until they were fed for the first time after swapping.
3. Parents in good body condition at hatching were more likely to produce a chick that was still alive 9 days after hatching than parents in poor body condition. Chick body mass at day 9 and at the end of the guarding period was positively related to the mean body condition of the parents at hatching.
4. The meal size provided by parents in good body condition was larger than that provided by parents in poor body condition. Parents in good body condition delivered more food to small than to large chicks, whereas no such relationship was found among parents in poor body condition.
5. Our results suggest that the Antarctic petrel parents adjust the amount of food delivered to their chick according to both the chick's need and their own body condition, and that the ability to respond to the chick's need is dependent upon their own body condition.