Evolution of CuZn superoxide dismutase and the Greek key beta-barrel structural motif

Detailed analysis of the CuZn superoxide dismutase (SOD) structure provides new results concerning the significance and molecular basis for sequence conservation, intron-exon boundary locations, gene duplication, and Greek key beta-barrel evolution. Using 15 aligned sequences, including a new mouse sequence, specific roles have been assigned to all 23 invariant residues and additional residues exhibiting functional equivalence. Sequence invariance is dominated by 15 residues that form the active site stereochemistry, supporting a primary biological function of superoxide dismutation. The beta-strands have no sequence insertions and deletions, whereas insertions occur within the loops connecting the beta-strands and at both termini. Thus, the beta-barrel with only four invariant residues is apparently over-determined, but dependent on multiple cooperative side chain interactions. The regions encoded by exon I, a proposed nucleation site for protein folding, and exon III, the Zn loop involved in stability and catalysis, are the major structural subdomains not included in the internal twofold axis of symmetry passing near the catalytic Cu ion. This provides strong confirmatory evidence for gene evolution by duplication and fusion followed by the addition of these two exons. The proposed evolutionary pathway explains the structural versatility of the Greek key beta-barrel through functional specialization and subdomain insertions in new loop connections, and provides a rationale for the size of the present day enzyme.     

Captive breeding for the conservation of cichlid fishes

Cichlid fishes are by far the largest familial group of endangered vertebrates, especially the haplochromines. This paper concerns the organization and management of captive breeding of haplochromine cichlids. The setting up of a small-scale laboratory programme for the conservation of endangered species is described in terms of funding, staffing, installation and livestock husbandry. Breeding is discussed in the context of the selection of broodstock, basic reproductive biology, rearing, disease, pathological disorders and the arrangements necessary for the transfer and documentation of progeny. There are already indications in Africa and elsewhere that the dramatic decline and demise of cichlid taxa in Lake Victoria will not be an isolated phenomenon. There is no prospect that the captive breeding of cichlids can alone resolve such large-scale problems in fisheries management and ecology, or prevent the loss of taxa in nature. Nevertheless, captive breeding provides conservation options which are otherwise limited or unavailable regarding the saving of individual 'heritage' species, restocking to the wild, fundamental laboratory research and, finally, public education on the grave issue of actual and prospective mass extinctions of cichlids and other rare fishes.     

Demography of agile gibbons (Hylobates agilis)

Demographic processes and the structure of a population of agile gibbons (Hylobates agilis) were investigated over 6 years in the Gunung Palung Reserve, Indonesia. Estimates of population size, density, and biomass revealed a population whose groups were stable in size and composition. Demographic processes place gibbons at risk, however, to short-term changes in their environment. Patterns of survival, fecundity, mortality, and dispersal combined to produce negative rates of growth. In addition, a top-heavy age-class distribution, with adults forming a large fraction of animals, makes it unlikely that this population could recover rapidly from a decline in numbers. Two behavioral factors, territoriality and monogamy, account for the size and stability of gibbon groups. Monogamy imposes limits on group size, while mating patterns and territoriality decrease the impact of sources of high mortality common in other primate species. These relationships underscore the fundamental importance of behavioral influence on demographic processes and social structure.     

水土保持耕作法是治理黄土高原地区坡耕地的根本措施

坡耕地所造成的土壤侵蚀,已成为全世界共同关注的问题。黄土高原地区,沟壑纵横,地形破碎,沟深坡陡,是世界上水土流失最强烈的地区。坡耕地的水土流失不仅是造成河流水库淤积的一个重要原因,更重要的是每年要丧失大量的肥沃表土,导致农业减产和土壤退化。一遇暴雨,人民的生命财产将遭受到巨大的威胁。黄土高原地区每年水力侵蚀土层深度达0.2—2cm,每1ha 损失表土120t 左右,损失     

Past and present distribution of stoneworts (Characeae) in The Netherlands

Across the world there is a prevailing view that freshwater algae are cosmopolitan. The notion has seldom been tested and is unlikely to be true in genetic terms. Nonetheless, some morphospecies of several groups of algae do have a worldwide distribution. Others have restricted distributions and may be regarded as endemic to a region. However there is always the possibility that they will be discovered in far away places. Australia has a rather large element of endemicity in its algal flora. From the early days of Australian phycology many new genera and species of freshwater algae have been described. Some are of such distinctive appearance or novelty as to be regarded as ‘flagship’ taxa. There is little doubt about their endemicity and their existence increases the probability of less-distinguished species also being endemic. The degree of endemicity is probably masked by the ‘force-fitting’ of European names to Australian species. Some Australian endemics are robust and are widely distributed in a variety of types of water body. Others, the frail endemics, the ones of greatest novelty and phylogenetic significance, have a very restricted range with their strongholds in dystrophic coastal lagoons where tracts or remnant patches of native vegetation survive. Their survival and the conservation of their biodiversity depends on recognition of the significance of coastal lagoons and swamps.     

Macrophytes and flood plain water dynamics in the River Danube ecotone research region (Austria)

In the ecotone research region of the Danube in Austria (Man-and-the-Biosphere (MaB)- project 5/21, Austrian Academy of Science) the macrophytes are one of the most important groups of organisms investigated. The species composition and the plant mass in hydrologically dynamic, and in predominantly stagnant sections of a system of lateral branches and sloughs were studied. This study showed that areas protected from frequent disturbance by floods had a greater number of species and higher biomass of aquatic macrophytes. Some species were shown to be evenly distributed throughout the branch system, whereas other species tended to form rare, but large singular patches. A set of new data elaboration techniques enabled us to describe the distribution pattern of the aquatic vegetation in this large branch system of the River Danube.     

AgTHR4, a new selection marker for transformation of the filamentous fungusAshbya gossypii, maps in a four-gene cluster that is conserved betweenA. gossypii andSaccharomyces cerevisiae

Single-read sequence analysis of the termini of eight randomly picked clones ofAshbya gossypii genomic DNA revealed seven sequences with homology toSaccharomyces cerevisiae genes (15% to 69% on the amino acid level). One of these sequences appeared to code for the carboxy-terminus of threonine synthase, the product of theS. cerevisiae THR4 gene (52.4% identity over 82 amino acids). We cloned and sequenced the complete putativeAgTHR4 gene ofA. gossypii. It comprises 512 codons, two less than theS. cerevisiae THR4 gene. Overall identity at the amino acid sequence level is 67.4%. A continuous stretch of 32 amino acids displaying complete identity between these two fungal threonine synthases presumably contains the pyridoxal phosphate attachment site. Disruption of theA. gossypii gene led to threonine auxotrophy, which could be complemented by transformation with replicating plasmids carrying theAgTHR4 gene and variousS. cerevisiae ARS elements. Using these plasmids only very weak complementation of aS. cerevisiae thr4 mutation was observed. Investigation of sequences adjacent to theAgTHR4 gene identified three additional ORFs. Surprisingly, the order and orientation of these four ORFs is conserved inA. gossypii andS. cerevisiae.     

Reproductive success and clonal genetic structure of the rareArnica montana (Compositae) in The Netherlands

In a medium-sized population ofArnica montana, a threatened species in The Netherlands, the breeding system, reproductive success and genetic clonal structure were studied. Pollination experiments suggested thatA. montana is largely self-incompatible. Inbreeding depression was observed for seedling weight but not for fruit weight and germination rate. Although genetic variation is rather low in this population, the data suggest an outcrossing mating system. Analysis of the genotype of all mapped rosettes in a plot of 100 m² indicated that dense clusters often consist of identical genotypes, suggesting a clonal structure. Open clusters frequently contained several different genotypes. This may be caused by limited fruit dispersal, since seedlings were found mainly within or in the near surroundings of the clusters.     

Floristic diversity and co-occurrences in a subtropical broad-leaved forest and two contrasting regrowth stands in central-west Yunnan Province,China

Many of the natural forested ecosystems that still remain in mainland China are being cleared with potentially detrimental effects on woody plant species diversity on both local and regional scales. The most extensive stand of subtropical broad-leaved forest remaining in China is located in Yunnan Province. In an effort to document the influence of human-induced disturbance on Yunnan's woody flora, floristic inventories were conducted in a stand of primary forest and in regrowth stands located in its interior and along its outer margin in the Xujiaba Nature Sanctuary in the Ailao Mountain Range. Of particular interest was the location of the disturbance relative to the primary forest source area. A total of 134 woody plant species representing 74 genera and 43 families were recorded. The floristics of the two regrowth stands were significantly different from each other, with < 10% of their respective floras comprised of co-occurring species. The interior regrowth stand had a higher number of co-occurring species with the primary forest; however, > 40% were still non-co-occurring.The principal families represented in the primary forest and the interior regrowth stand were Aquifoliaceae, Berberidaceae, Fagaceae, Lauraceae, Rosaceae, Smilacaceae, Symplocaceae, Theaceae, and Vacciniaceae. The three dominant species with relative importance values ranging from > 5% to 18% in both the primary forest and the interior regrowth stand were Castanopsis wattii, Lithocarpus jingdongensis, and Symplocos sumuntia. The edge regrowth stands had the lowest species diversity and were dominated by the native pine Pinus yunnanensis, with a relative importance of 24%. The principal families represented in the edge regrowth stand were Betulaceae, Ericaceae, Fagaceae, Myricaceae, Pinaceae, and Theaceae. Only the Fagaceae and Theaceae were well-represented in all three stands. The results of the study document the low species diversity in post-cutting regrowth on the margins of the primary forest as compared with post-cutting regrowth in the forest interior.     

畜禽遗传资源系统保存的理论与模拟实验研究──I．畜禽遗传资源系统保存的理论分析

本文提出了畜禽遗传资源系统保存的概念、基本思想及其群体遗传结构变化的数学模型。该理论是将一定时空内某一畜种所拥有的全部基因作为保存对象,既将活体保存作为基本方法,又将其有机地与高新生物技术结合在一起;既追求系统地保存控制畜种特性的基因资源,又可达到保存地方品种的目的。在假定无世代重叠,群体内存在选择、突变、迁移,且考虑漂变效应的情况下,本文所构建的两个数学模型可分别用来描述一个座位上多个主基因频率或数量性状群体均数的动态变化。