Landscape features impact connectivity between soil populations: a comparative study of gene flow in earthworms

Landscape features are known to alter the spatial genetic variation of aboveground organisms. Here, we tested the hypothesis that the genetic structure of belowground organisms also responds to landscape structure. Microsatellite markers were used to carry out a landscape genetic study of two endogeic earthworm species, Allolobophora chlorotica (N = 440, eight microsatellites) and Aporrectodea icterica (N = 519, seven microsatellites), in an agricultural landscape in the North of France, where landscape features were characterized with high accuracy. We found that habitat fragmentation impacted genetic variation of earthworm populations at the local scale. A significant relationship was observed between genetic diversity (H_e, A_r) and several landscape features in A. icterica populations and A. chlorotica. Moreover, a strong genetic differentiation between sites was observed in both species, with a low degree of genetic admixture and high F_st values. The landscape connectivity analysis at the regional scale, including isolation by distance, least‐cost path and cost‐weighted distance approaches, showed that genetic distances were linked to landscape connectivity in A. chlorotica. This indicates that the fragmentation of natural habitats has shaped their dispersal patterns and local effective population sizes. Landscape connectivity analysis confirmed that a priori favourable habitats such as grasslands may constitute dispersal corridors for these species.     

Low‐cost grass restoration using erosion barriers in a degraded African rangeland

Rangeland degradation, typified by extensive bare ground and soil erosion, is a serious problem around the world. In sub‐Saharan Africa, rangeland degradation threatens the food security of millions of people who depend on livestock and the region's large mammalian wildlife diversity. We tested the ability of five simple, low‐cost erosion barriers to promote grass and forb establishment in a bare ground‐dominated rangeland in Kenya. These treatments were: (1) trenches with small berms; (2) bundles of branches; and bundles of branches with (3) elephant dung balls, (4) burlap sacking, or (5) nylon mesh sacking inside them. We also tested whether barrier performance depended on (1) supplemental seeding with the grass Cenchrus ciliaris and (2) whether a barrier was located next to existing vegetation patches versus in the open. Within months, the trench and nylon mesh barriers had accumulated 20–50% more sediment than other treatments and had greater grass and forb seedling establishment. Seeding with Cenchrus resulted in higher herbaceous cover but was not necessary for other grasses to establish. After 3 years, the trench and nylon mesh barriers had created patches of new vegetation averaging 18–63% larger than patches created by the other treatments. Barriers that were initially adjacent to existing vegetation had created new vegetation patches averaging 65% larger than those created by solitary barriers. Results suggest that all barrier types increase grass cover but that trenches—especially if placed next to existing vegetation patches—are a particularly cost‐effective way to reduce bare ground and erosion in degraded rangelands.     

Multi‐scale responses to warming in an experimental insect metacommunity

In metacommunities, diversity is the product of species interactions at the local scale and dispersal between habitat patches at the regional scale. Although warming can alter both species interactions and dispersal, the combined effects of warming on these two processes remains uncertain. To determine the independent and interactive effects of warming‐induced changes to local species interactions and dispersal, we constructed experimental metacommunities consisting of enclosed milkweed patches seeded with five herbivorous milkweed specialist insect species. We treated metacommunities with two levels of warming (unwarmed and warmed) and three levels of connectivity (isolated, low connectivity, high connectivity). Based on metabolic theory, we predicted that if plant resources were limited, warming would accelerate resource drawdown, causing local insect declines and increasing both insect dispersal and the importance of connectivity to neighboring patches for insect persistence. Conversely, given abundant resources, warming could have positive local effects on insects, and the risk of traversing a corridor to reach a neighboring patch could outweigh the benefits of additional resources. We found support for the latter scenario. Neither resource drawdown nor the weak insect‐insect associations in our system were affected by warming, and most insect species did better locally in warmed conditions and had dispersal responses that were unchanged or indirectly affected by warming. Dispersal across the matrix posed a species‐specific risk that led to declines in two species in connected metacommunities. Combined, this scaled up to cause an interactive effect of warming and connectivity on diversity, with unwarmed metacommunities with low connectivity incurring the most rapid declines in diversity. Overall, this study demonstrates the importance of integrating the complex outcomes of species interactions and spatial structure in understanding community response to climate change.     

Effects of road network on Asian elephant habitat and connectivity between the nature reserves in Xishuangbanna,Southwest China

Evaluating road effects on the ecological status and landscape connectivity is critical for animal corridor design. Taking the fragmented nature reserves in Xishuangbanna as a case, road impacts on Asian elephant habitats were determined based on a suitability analysis. Potential corridors between different sub-reserves were located using “least-cost” method as a systematic way incorporating remote sensing (RS) and geographic information system (GIS). Our results revealed that road networks, especially high-level roads (expressway, national road and city-county city road), had the largest effects on the suitability according to the sensitivity analysis. Suitability ( > 40) area will increase about 40% if there were no high-level roads. In total, seven potential linkages were located and found to be capable of connecting the habitats of the four sub-reserves. We suggested the Menglun reserve could serve as a stepping-stone for elephant migration. Four further conservation priorities were also identified between the Menglun reserve and the Mengla reserve where the road impacts were intensive. Our study provided information for the development of an efficient reserve network for elephant conservation between existing nature reserves in China and neighboring provinces in Lao PDR.     

病理浓度甲醛的累积导致小鼠神经母瘤细胞活力及黏附能力下降

Formaldehyde (FA) plays a role in age-related cognitive impairment. An increase in endogenous FA induced by long-term oral administration of methanol, which triggers Tau hyperphosphorylation in the brain of Macaca mulatta and deteriorates the animal’s working memory. Short-term, high-dose FA treatment induces Tau hyperphosphorylation in the cytoplasm and nucleus of murine neural cells in vivo and in vitro. However, the pathological FA level is lower than that used in those experiments. The long-term effect on neural cells of FA at pathological doses has not yet been investigated. Here, based on the pathological level of endogenous FA in Alzheimer’s disease (AD) patients, we added 10 mmol/l (mM) FA to the medium and incubated murine neuroblastoma (N2a) cells for six days by using a serial passage strategy. FA-induced significant decreases in cell number and viability as well as increased lactate dehydrogenase (LDH) release were observed during the culture. Holographic microscopy showed that cells exposed to FA were thicker and smaller, exhibiting a weakened adhesive morphology. Immunofluorescence staining demonstrated that the pathological dose of FA increases Tau phosphorylation at Threonine (T181) and Serine (S396) epitopes over time. These results indicate that long-term exposure to a pathological concentration of FA causes the cell viability decline and even cell death under the experimental conditions     

Population structure and connectivity of the mountainous star coral,Orbicella faveolata,throughout the wider Caribbean region

As coral reefs continue to decline worldwide, it becomes ever more necessary to understand the connectivity between coral populations to develop efficient management strategies facilitating survival and adaptation of coral reefs in the future. Orbicella faveolata is one of the most important reef‐building corals in the Caribbean and has recently experienced severe population reductions. Here, we utilize a panel of nine microsatellite loci to evaluate the genetic structure of O. faveolata and to infer connectivity across ten sites spanning the wider Caribbean region. Populations are generally well‐mixed throughout the basin (F_ST = 0.038), although notable patterns of substructure arise at local and regional scales. Eastern and western populations appear segregated with a genetic break around the Mona Passage in the north, as has been shown previously in other species; however, we find evidence for significant connectivity between Curaçao and Mexico, suggesting that the southern margin of this barrier is permeable to dispersal. Our results also identify a strong genetic break within the Mesoamerican Barrier Reef System associated with complex oceanographic patterns that promote larval retention in southern Belize. Additionally, the diverse genetic signature at Flower Garden Banks suggests its possible function as a downstream genetic sink. The findings reported here are relevant to the ongoing conservation efforts for this important and threatened species, and contribute to the growing understanding of large‐scale coral reef connectivity throughout the wider Caribbean.     

Genetic variation of loci potentially under selection confounds species–genetic diversity correlations in a fragmented habitat

Positive species–genetic diversity correlations (SGDCs) are often thought to result from the parallel influence of neutral processes on genetic and species diversity. Yet, confounding effects of non‐neutral mechanisms have not been explored. Here, we investigate the impact of non‐neutral genetic diversity on SGDCs in high Andean wetlands. We compare correlations between plant species diversity and genetic diversity (GD) calculated with and without loci potentially under selection (outlier loci). The study system includes 2188 specimens from five species (three common aquatic macroinvertebrate and two dominant plant species) that were genotyped for 396 amplified fragment length polymorphism loci. We also appraise the importance of neutral processes on SGDCs by investigating the influence of habitat fragmentation features. Significant positive SGDCs were detected for all five species (mean SGDC = 0.52 ± 0.05). While only a few outlier loci were detected in each species, they resulted in significant decreases in GD and in SGDCs. This supports the hypothesis that neutral processes drive species–genetic diversity relationships in high Andean wetlands. Unexpectedly, the effects on genetic diversity GD of the habitat fragmentation characteristics in this study increased with the presence of outlier loci in two species. Overall, our results reveal pitfalls in using habitat features to infer processes driving SGDCs and show that a few loci potentially under selection are enough to cause a significant downward bias in SGDC. Investigating confounding effects of outlier loci thus represents a useful approach to evidence the contribution of neutral processes on species–genetic diversity relationships.     

Improving landscape connectivity for the Yunnan snub-nosed monkey through cropland reforestation using graph theory

Habitat fragmentation is a threat to biodiversity because it restricts the ability of animals to move. Maintaining landscape connectivity could promote connections between habitat patches, which is extremely important for the preservation of gene flow and population viability. This paper aims to evaluate the landscape connectivity of forest areas as it relates to the conservation of the Yunnan snub-nosed monkey (Rhinopithecus bieti), an emblematic and endemic endangered primate species. Specifically, this study seeks to model ways to improve connectivity via cropland reforestation scenarios which incorporate graph theory and genetic distances. The connectivity improvement assessment is performed at two nested scales. At the regional scale, the aim is to quantitatively assess the gain in connectivity from different reforestation scenarios, in which croplands are replaced by different kinds of forest habitats. At the local scale, the goal is to prioritize and to locate croplands based on the gain in connectivity that they would provide if they were reforested. The results indicate that the four reforestation scenarios have different impacts on connectivity; the fourth scenario, in which reforestation is accomplished with plant species that provide optimal monkey habitat, yields the greatest increase in connectivity (+24% versus less than +2% for the others). Prioritization of the 1482 cropland patches shows that the 10 best patches increase connectivity from 0.04% to 9.1% as the isolation threshold distance increases. This kind of graph theoretic approach appears to be a useful tool for connectivity assessment and the development of conservation measures for species impacted by human activities.     

Multi-node selection of patches for protecting habitat connectivity: Fragmentation versus reachability

Landscape connectivity is of major importance in biodiversity conservation, and is one of the key aspects to be taken into consideration in the spatial design of networks of protected areas. Graph-theoretical approaches are useful in modelling habitat connectivity and defining priority areas for the protection of connectivity. This prioritization can be done based on rankings of the centrality (or importance) of individual habitat patches. Moreover, the centrality of a set of n habitat patches can also be calculated. Importantly, the most central single patch is not necessarily a member of the most central group of n patches (non-nested topology). Multi-node analyses identify groups of patches that maximally complement each other in order to increase the protection of connectivity for the whole network. We apply multi-node analyses to the prioritization of habitat patches for five vulnerable bird species in Catalonia, Spain, using two different approaches to connectivity, based on fragmentation and reachability. Groups of patches based on fragmentation are usually concentrated in core areas, while reachability groups are widely spread. Fragmentation sets have higher centrality value for low-mobility species, and reachability sets for long distance dispersers. The protection of the networks against fragmentation requires fewer patches, allows for more gradual implementation and is currently better accounted for by the Natura 2000 network of protected areas, while the protection of reachability is less costly and more efficient in terms of area requirements. Our work contributes to the development of landscape graph analysis for reserve design towards multi-node approaches.