The Neolithic of the southern Levant

The Neolithic period of the southern Levant was an era of tremendous change. Over the course of the Neolithic, the gradual transition from foraging to agriculture involved not merely economic innovations, but also profound shifts in population size, social organization, and technology. This represents possibly the earliest, and certainly one of the earliest, instances of the transition to agriculture. The advent of farming altered human demography, health, and diversity; it shaped the spread of the world's dominant cultures, genes, and languages. 1 , 2 It recast humans' relationship with the natural world, increasing modification of the environment. It both enabled and required the development of new social structures as humans learned how to live in increasingly large and densely packed groups. These transformations were not easily achieved. This paper traces the development of the southern Levantine Neolithic through two thousand years of socioeconomic elaboration and expansion; a major social recalibration in the middle Neolithic; and a final millennium‐and‐a‐half of smaller‐scale and materially simpler adaptations.     

Expression of Mycobacterium tuberculosis Rv1991c using an arabinose-inducible promoter demonstrates its role as a toxin

Conditional gene expression systems are useful tools for studying the role of essential or toxic gene products in bacterial systems. There is a paucity of such systems available for use in the mycobacteria. The utility of the Escherichia coli arabinose-inducible system was looked into, since it is tightly controlled in response to the presence of arabinose and glucose. It was demonstrated that the P(BAD) promoter can be used to express heterologous genes in Mycobacterium smegmatis. Expression of a lacZ reporter gene demonstrated that promoter activity was inducible in response to the presence of glucose, but only on solid medium. This system was utilized to study the functional consequences of expressing one member of a putative toxin-antitoxin pair (Rv1991c). Rv1991c has homology with a number of bacterial toxins, including ChpK, MazF and PemK. A potential antitoxin gene has been identified, adjacent to Rv1991c in the genome, which was coexpressed with the toxin. Expression of the toxin alone inhibited the growth of E. coli, whereas coexpression with the antitoxin did not. Expression of Rv1991c also led to a marked reduction of cell viability in M. smegmatis, confirming its role as a potent toxin.     

Effects of local and landscape scale and cattle grazing intensity on Orthoptera assemblages of the Hungarian Great Plain

The aims of this study were to test the influence of grazing intensity, effects of local and landscape parameters, and regional effects on orthopteran assemblages. We made our investigations on extensively and intensively grazed cattle pastures in three regions of the Hungarian Great Plain. The regions differed in landscape complexity; one region was situated in a structurally simple landscape with large landscape units, one in a structurally complex landscape with marshy patches and trees in the grasslands and one in a landscape with intermediate structural complexity. In each region we had seven pairs of differently managed grasslands, which differed in grazing intensity. Grasshoppers were recorded once in July 2003 using sweepnet catches and visual and acoustic observations in two 95 m long transects at each site (84 transects in total). Botanical surveys and measurements of other local factors were also made for each transect. After samplings, we digitised the most important land-use types using aerial photographs to produce landscape scale parameters within 100 and 500 m circles around every site. Analysing the management, regional, landscape and local effects on species richness with linear mixed models, we showed only strong significant regional differences. Linear mixed models for Orthoptera abundance yielded significant regional effects and marginal management effects. However, after including local and landscape parameters in a separate model a marginal local effect was found instead of a management effect in addition to the significant regional effect. Logistic regression models of 15 species also revealed the importance of local factors, particularly the importance of grass height, which is highly dependent on grazing intensity. We conclude that management intensity has indirect effects on Orthoptera species richness and abundance. Landscape scale parameters are also important, at least for some species.     

The wealth of species: ecological communities, complex systems and the legacy of Frank Preston

General statistical patterns in community ecology have attracted considerable recent debate. Difficulties in discriminating among mathematical models and the ecological mechanisms underlying them are likely related to a phenomenon first described by Frank Preston. He noted that the frequency distribution of abundances among species was uncannily similar to the Boltzmann distribution of kinetic energies among gas molecules and the Pareto distribution of incomes among wage earners. We provide additional examples to show that four different 'distributions of wealth' (species abundance distributions, species–area and species–time relations, and distance decay of compositional similarity) are not unique to ecology, but have analogues in other physical, geological, economic and cultural systems. Because these appear to be general statistical patterns characteristic of many complex dynamical systems they are likely not generated by uniquely ecological mechanistic processes.     

Floxed allele for conditional inactivation of the voltage-gated sodium channel beta1 subunit Scn1b

The voltage-gated sodium channel gene Scn1b encodes the auxiliary subunit beta1, which is widely distributed in neurons and glia of the central and peripheral nervous systems, cardiac myocytes, skeletal muscle myocytes, and neuroendocrine cells. We showed previously that the Scn1b null mutation results in a complex and severe phenotype that includes retarded growth, seizures, ataxia, and death by postnatal day 21. We generated a floxed allele of Scn1b by inserting loxP sites surrounding the second coding exon. Ubiquitous deletion of the floxed exon by Cre recombinase using CMV-Cre-transgenic mice produced the Scn1b(del) allele. The null phenotype of Scn1b(del) homozygotes is indistinguishable from that of Scn1b nulls and confirms the invivo inactivation of Scn1b. Conditional inactivation ofthe floxed allele will make it possible to circumvent the lethality that results from complete loss of this gene, such that the physiological role of Scn1b in specific cell types and/or specific developmental time points can be investigated.     

Transgenic mouse lines expressing Cre recombinase specifically in posterior notochord and notochord

During development, the organizer provides instructive signals to surrounding cells as well as contributing cells to axial structures. To dissect organizer function at different developmental stages, conditional approaches such as the Cre/loxP system for conditional mutagenesis are particularly useful. Here we describe two new Cre transgenic mouse lines, Foxa2 NFP-Cre and Nodal PNC-Cre, with activity in two organizer domains, the posterior notochord (PNC) and notochord. These lines were made using defined regulatory elements from the Foxa2 and Nodal genes that direct Cre expression in overlapping domains of the PNC and notochord. Our detailed analysis of the timing and location of Foxa2 NFP-Cre and Nodal PNC-Cre activity indicates that these lines are appropriate for conditional mutagenesis of genes expressed from early somite stages onward.     

Generation of a transgenic mouse model with chondrocyte-specific and tamoxifen-inducible expression of Cre recombinase

Postnatal cartilage development and growth are regulated by key growth factors and signaling molecules. To fully understand the function of these regulators, an inducible and chondrocyte-specific gene deletion system needs to be established to circumvent the perinatal lethality. In this report, we have generated a transgenic mouse model (Col2a1-CreER(T2)) in which expression of the Cre recombinase is driven by the chondrocyte-specific col2a1 promoter in a tamoxifen-inducible manner. To determine the specificity and efficiency of the Cre recombination, we have bred Col2a1-CreER(T2) mice with Rosa26R reporter mice. The X-Gal staining showed that the Cre recombination is specifically achieved in cartilage tissues with tamoxifen-induction. In vitro experiments of chondrocyte cell culture also demonstrate the 4-hydroxy tamoxifen-induced Cre recombination. These results demonstrate that Col2a1-CreER(T2) transgenic mice can be used as a valuable tool for an inducible and chondrocyte-specific gene deletion approach.     

Migration in migration-related diversity? The nexus between superdiversity and migration studies

This article argues that the notion of ‘superdiversity’ implies an investigation of diversity that goes well beyond the nature of migration origins and trajectories. To probe the academic value of superdiversity, I situate it within broader academic debates, suggesting that it is necessary to distinguish between superdiversity as a malleable social science concept – a set of variables that researchers conjunctively investigate – and superdiversity as a context in which these variables play out in complex social patterns. I argue that complexity is an integral aspect of superdiversity, before explaining how innovative research methods were used to investigate superdiversity in a dual-site project in London and Toronto in order to explore its relevance for global comparative research.