Reduced representation sequencing detects only subtle regional structure in a heavily exploited and rapidly recolonizing marine mammal species

Next‐generation reduced representation sequencing (RRS) approaches show great potential for resolving the structure of wild populations. However, the population structure of species that have shown rapid demographic recovery following severe population bottlenecks may still prove difficult to resolve due to high gene flow between subpopulations. Here, we tested the effectiveness of the RRS method Genotyping‐By‐Sequencing (GBS) for describing the population structure of the New Zealand fur seal (NZFS, Arctocephalus forsteri), a species that was heavily exploited by the 19th century commercial sealing industry and has since rapidly recolonized most of its former range from a few isolated colonies. Using 26,026 neutral single nucleotide polymorphisms (SNPs), we assessed genetic variation within and between NZFS colonies. We identified low levels of population differentiation across the species range (<1% of variation explained by regional differences) suggesting a state of near panmixia. Nonetheless, we observed subtle population substructure between West Coast and Southern East Coast colonies and a weak, but significant (p = 0.01), isolation‐by‐distance pattern among the eight colonies studied. Furthermore, our demographic reconstructions supported severe bottlenecks with potential 10‐fold and 250‐fold declines in response to Polynesian and European hunting, respectively. Finally, we were able to assign individuals treated as unknowns to their regions of origin with high confidence (96%) using our SNP data. Our results indicate that while it may be difficult to detect population structure in species that have experienced rapid recovery, next‐generation markers and methods are powerful tools for resolving fine‐scale structure and informing conservation and management efforts.     

Contemporary status of the North American paddlefish, Polyodon spathula

North American paddlefish, Polyodon spathula, were once abundant in most large rivers and tributaries of the Mississippi River basin, but numbers have declined dramatically in most areas during the past 100 years. Habitat destruction and river modification are the most obvious changes affecting their distribution and abundance. Although peripheral range has dwindled, paddlefish still occur over most of their historic range and are still found in 22 states. Populations are currently increasing in 3 states, stable in 14, declining in 2, unknown in 3, and extirpated in 4. Sport harvests presently occur in 14 states, however two states with traditionally important sport fisheries report decreased recruitment into the population and are planning more restrictive regulations. Commercial fisheries are reported in only six states. During the past 10 years, five states have removed paddlefish from their commercial list primarily because of declines in adult stocks due to overfishing or illegal fishing. Ten states are currently stocking paddlefish to supplement existing populations or to recover paddlefish populations in the periphery of its native range.     

Benthic assemblages,biodiversity and invasiveness in marinas and commercial harbours: an investigation using a bioindicator group

Fouling communities on artificial marine structures are generally different from benthic communities in natural rocky habitats. However, they may also differ among different types of artificial structures. Two artificial structures in direct contact with arriving vessels were compared: floating pontoons within recreational marinas, and sea-walls within commercial harbours. Natural rocky habitats were used as a reference, and the genus Eudendrium (Cnidaria, Hydrozoa) was chosen as a bioindicator. The assemblages were different among the three types of habitat studied, with different species characterising each habitat. The probability of finding an invasive Eudendrium species was significantly higher on pontoons. Diversity was the lowest on pontoons, but it was not significantly different between sea-walls and natural rocks. In general, a barrier to the spread of exotic species exists between harbours and natural rocky habitats. Floating pontoons seem to be a less suitable habitat for native fauna and a key element in marine biological invasions.     

Correlated pay-offs are key to cooperation

The general belief that cooperation and altruism in social groups result primarily from kin selection has recently been challenged, not least because results from cooperatively breeding insects and vertebrates have shown that groups may be composed mainly of non-relatives. This allows testing predictions of reciprocity theory without the confounding effect of relatedness. Here, we review complementary and alternative evolutionary mechanisms to kin selection theory and provide empirical examples of cooperative behaviour among unrelated individuals in a wide range of taxa. In particular, we focus on the different forms of reciprocity and on their underlying decision rules, asking about evolutionary stability, the conditions selecting for reciprocity and the factors constraining reciprocal cooperation. We find that neither the cognitive requirements of reciprocal cooperation nor the often sequential nature of interactions are insuperable stumbling blocks for the evolution of reciprocity. We argue that simple decision rules such as ‘help anyone if helped by someone’ should get more attention in future research, because empirical studies show that animals apply such rules, and theoretical models find that they can create stable levels of cooperation under a wide range of conditions. Owing to its simplicity, behaviour based on such a heuristic may in fact be ubiquitous. Finally, we argue that the evolution of exchange and trading of service and commodities among social partners needs greater scientific focus.     

Electronic traps for detection and population monitoring of adult fruit flies (Diptera: Tephritidae)

During the last decades, the economic importance of tephritid fruit flies (FF) has increased worldwide because of recurrent invasions and expansions into new areas, and reduced control capabilities of current control systems. Efficient monitoring systems, thus, are required to provide fast information to act promptly. With this aim in mind, we developed two electronic trap (e‐trap) versions for adult FF: one with specific volatiles for male and female adult Ceratitis capitata, and the second, based on the attraction of adult FF to yellow colour, targeting Dacus ciliatus, Rhagoletis cerasi and Bactrocera oleae. In the case of B. oleae, the female pheromone and ammonium bicarbonate were added as synergists. In the two versions, attracted FF were retained in the trap on glued surfaces. Real‐time images of the surfaces were automatically taken and transmitted to a server. We tested the two e‐trap versions in insect‐proof cages, where flies were released and recaptured, and in commercial orchards throughout the Mediterranean: C. capitata in peach orchards in Italy; R. cerasi in cherry orchards in Greece; B. oleae in olive orchards in Spain and in Greece; and D. ciliatus in melons in plastic tunnels in Israel. The e‐trap showed excellent abilities to transmit real‐time images of trapped FF and a high specificity for trapping different FF species. The ability of the entomologist to correctly classify FF from images in the office was >88%. In addition, average number of flies/trap in e‐trap grids did not differ from numbers reported on grids of conventional traps that were operating simultaneously. The e‐traps developed and tested in this study provide the basis for the real‐time monitoring of FF were no olfactory attractants are available, and for the surveillance of alien FF incursions where generic, but not specific, olfactory attractants exists.     

Micropropagation of Ranunculus Asiaticus: A Review and Perspectives

Ranunculus asiaticus is an important ornamental species mainly cultivated in the countries surrounding the Mediterranean sea. So far the multiplication of this plant has been mainly carried out by seed and rhizome division; however, these systems present many drawbacks. Tissue culture is an attractive alternative for accelerated propagation of selected and indexed genotypes. In this paper we review the work carried out on in vitro culture of R. asiaticus and present a flow chart for its commercial production, using axillary budding and embryogenesis. Although the price of micropropagated plants is higher compared to traditional material (seedlings and rhizomes from seed populations), it should be considered that tissue cultured plants have a better rhizome yield per plant; moreover, the tissue culture approach allows to offer clonal material of selected lines.     

DIFFERENT RESULTS BY DIFFERENT COMMERCIAL TAQ DNA POLYMERASE IN RAPD

RAPD (Random Amplified Polymorphic DNA) technique has been widely used in animal, plant, human and microorganism research since it was first established by Williams in 1990[1-3]. But, because of low annealed temperature and short 10-nt primers, the resolution and repetition is low in RAPD. The stability of RAPD is influenced by many factors such as the concentration of template, primers, dNTP, Mg++,and Taq DNA polymerase[4-6]. The influence on amplified products of different commercial Taq DNA polymerase in RAPD was studied in this paper.     

Characteristics of nest cavities of Barrow's Goldeneyes in eastern Canada

ABSTRACT Barrow's Goldeneyes (Bucephala islandica) are secondary cavity nesters found in western North America and, to a lesser extent, in eastern North America. The eastern North American population is concentrated in the province of Québec and totals about 2000 pairs. Characteristics of nest cavities used by Barrow's Goldeneyes have been described in western North America, but no nest cavities have been found in eastern North America. From 2004 to 2008, we searched for nest cavities in the species’ core breeding area in the boreal forests north of the St. Lawrence River. We captured 12 adult females on their breeding grounds and fitted them with transmitters, but none apparently nested so we conducted ground searches in areas near lakes where paired birds were observed. We found 11 cavities, with 10 in dead, decaying trees and one in the dead part of a dying tree. Nine cavities were in white birch (Betula papyrifera) trees. Mean cavity height was 3.5 ± 1.6 (SD) m (range = 1.2–6.6 m) and mean diameter at breast height (DBH) of cavity trees was 37.8 ± 4.7 cm (range = 32.2–47.5 cm). In contrast to the population in western North America, Barrow's Goldeneyes in eastern North America appear to rely on the availability of natural cavities formed in large, decaying trees for nesting. Current forestry regulations in Québec do not promote the retention of either large trees or older forests, reducing the availability of potential nest cavities for Barrow's Goldeneyes and likely threatening their long‐term conservation. Therefore, we recommend that guidelines be developed to promote silvicultural practices aimed at preserving the long‐term availability of large (DBH ≥ 30 cm) decaying trees across the breeding range of Barrow's Goldeneyes.