Comparison of the Mutation Spectrum of Hypervariable Segment 1 for Phylogeographical Groups of Human Mitochondrial DNA

The nucleotide sequence variation of hypervariable segment 1 (HVS1) was analyzed for mtDNAs of 88 phylogeographical clusters characteristic of African, West Eurasian, or East Eurasian populations. A significant difference in the distribution of mutations was revealed for the mitochondrial gene pools of the regional human populations. The HVS1 positions were identified whose instability is explained by strand displacement during mtDNA replication. Strand displacement was assumed to be a major mechanism of context-dependent mutagenesis associated with the regional differentiation of human populations.     

玉米胚胎发育、萌发与胚的结构及子叶二型性

运用扫描电镜与半薄切片技术,观察了玉米(Zea mays L.)的胚发育过程,得到以下认识：第一、关于原胚。玉米合子细胞分裂形成的原胚分为胚柄、胚基与胚体三部分。胚柄短小,寿命短暂。胚基具有生长带,纵向伸长长度大,胚基的上部参与形成胚根鞘,其余部分干缩后附在胚根鞘末端。第二、玉米胚的背腹极性及二型子叶。原胚初期胚体出现背腹极性,腹面的细胞小,细胞质稠密,液泡较少;背面的细胞较大,细胞质稠密度略低,液泡较多。原胚后期胚体分化为腹部与背部,腹部从腹面的中央突起,背部在腹部的周围(从左至右侧)及整个胚体背面。进入幼胚时期,腹部分化为胚芽鞘、生长锥、胚轴、胚根和胚根鞘(大部分)。期间,胚芽鞘原基和根原始细胞的分化都从胚体的中轴部位开始,然后向两侧和四周扩展,表现出胚体腹面形态的两侧对称性。原胚的背部形成盾片原基,盾片原基经历向左、右、上、下的迅速扩展和加厚的生长,将整个腹部所分化形成的构件藏于盾片的纵沟之中,最后盾片从纵沟的边缘长出的左、右侧鳞均向胚体的中轴线生长,完整显示出玉米胚腹面的两侧对称。玉米胚由腹部顶端形成胚芽鞘和生长锥的情况与水稻胚的胚芽鞘(顶生子叶)和生长锥的形成相同,玉米的胚芽鞘也是顶生子叶,盾片则是侧生子叶。玉米异型子叶的由来在于胚体的背腹极性。第三、玉米胚的真实形态结构及胚胎发育时期的划分。玉米胚是一个胚轴,其顶部是具胚芽鞘的胚芽,中部是具侧生子叶(盾片)的胚轴,下部是具胚根鞘的胚根。盾片从背面到腹面包住整个胚轴系统,在胚的腹面上可见从盾片边缘衍生的左、右侧鳞的边缘相迭,只在接缝线的上、下端留下蝌蚪状的小孔,使胚芽鞘和胚根鞘的末端稍露出。胚胎发育分为4个时期：1．原胚期——从合子细胞分裂开始至分化背部与腹部为止;2．腹部迅速分化期;3．盾片快速生长期;4．侧鳞生长、胚套形成期。第四、获取垂盲于胚腹面正中央纵切面是正确认识玉米胚形态的关键。     

植物光敏素在玉米胚芽鞘不同类型向光性反应中的作用模式

先前的研究考察了红光对玉米（Zea mays L.cv.Royaldent Hit85)胚芽鞘向光性反应的影响,本研究进一步分析了红光对蓝光照射时间依赖型向光性（TDP）影响的光具－反应曲线,发现该反应不像红光对脉冲蓝光诱导的向光性的影响那样属于超低光量反应,而是一种低光量反应,且之后的脉冲远红光可以逆转红光对TDP影响的效果。但远红光预处理延长后,逆转了的TDP反应性可以得到恢复。不仅如此,暗适应胚芽鞘接受不同时间的单独远红光预处理后可同样获得与预处理光量成比例的TDP反应性,表明暗适应胚芽鞘在接受远红光顶处理后亦可建立起长时间向光性蓝光照射的反应能力。远红光对TDP反应性影响的光量－反应曲线分析揭示,该远红光影响依赖于照射时间并要求高光量。鉴于高光量范围内上述远红影响不符合所谓反比定律,远红光对TDP反应性的影响很可能属一高辐照反应,根据上述研究发现探讨了植物光敏素作用模式与不同光性反应信号转导途径之间可能存在的相互关系。     

Simple Synthesis of Both Enantiomers of the C7-C12 Segment of Epothilones

Both enantiomers of the C7-C12 segment (3 and 4) of antitumor antibiotics epothilones (1and 2) were synthesized from methyl (R)- and (S)-3-hydroxy-2-methylpropionate (5 and 6) in five steps in a fair yield.     

Prehistoric mongoloid dispersals. Edited by Takeru Akazawa and Emöke J. E. Szathmáry. New York: Oxford University Press. 1996. 387 pp. ISBN 0-19-852318-1 $150.00 (cloth)

Studies of the dynamics of locomotor performances depend on knowledge of the distribution of body mass within and between limb segments. However, these data are difficult to derive. Segment mass properties have generally been estimated by modelling limbs as truncated cones, but this approach fails to take into account that some segments are of elliptical, not circular, cross section; and further, the profiles of real segments are generally curved. Thus, they are more appropriately modelled as solids of revolution, described by the rotation in space of convex or concave curves, and the possibility of an elliptical cross section needs to be taken into account. In this project we have set out to develop a general geometric model which can take these factors into account, and permit segment inertial properties to be derived from cadavers by segmentation, and from living individuals using linear external measurements. We present a model which may be described by up to four parameters, depending o the profile and serial cross section (circular or ellipsoidal) of the individual segments. The parameters are obtained from cadavers using a simplified complex-pendulum technique, and from intact specimens by calculation from measurements of segment diameters and lengths. From the parameters, the center of mass, moments of inertia, and radii of gyration may be derived, using simultaneous equations. Inertial properties of the body segments of four Pan troglodytes and a single Pongo were determined, and contrasted to comparable findings for humans. Using our approach, the mass distribution characteristics of any individual or species may be represented by a rigid-link segment model or “android.” If this is made to move according to motion functions derived from a real performance of the individual represented, we show that recordings of resulting ground reaction forces may be quite closely simulated by predictive dynamic modelling. © 1996 Wiley-Liss, Inc.     

Analysis by electron microscopy of the variable segment in the maxi-circle of kinetoplast DNA from Trypanosoma brucei

The 20.5-kbp maxi-circle from the kinetoplast DNA of Trypanosoma brucei contains a 5-kbp segment which is not cut by most restriction endonucleases and which varies in size in closely-related trypanosome strains (Borst, P., Fase-Fowler, F., Hoeijmakers, J.H.J. and Frasch, A.C.C. (1980) Biochim. Biophys. Acta 610, 197–210). We have now analysed partial denaturation maps of the linearized maxi-circles by electron microscopy and find that the variable segment is not more AT-rich than the remainder of the maxi-circle. Early denaturation begins at two separate regions of the maxi-circle outside the variable region and one of these corresponds with the position of the gene for the large (12 S) ribosomal RNA. Denaturation-renaturation of maxi-circles leads to the formation of partially mismatched duplexes that look like underwound loops in electron micrographs. These loops are only found in the variable region and they vary in size and appearance. Under our renaturation conditions single-stranded maxi-circle DNA is devoid of secondary structure and this suggests that the underwound loops arise by misalignment of straight tandem repeats in the DNA. We have also analysed heteroduplexes between maxi-circles from two closely related T. brucei strains that differ by 1 kbp in the size of their variable segment. Most molecules had no underwound loops and contained mismatched regions in the variable segment only. The appearance of these regions is diverse, varying from fully duplex with two single-stranded loops to molecules with a heterogeneous array of smaller loops. The total size of single-stranded DNA in the heteroduplexes may be as high as 1.2 μm, i.e., a factor 4 higher than the size difference between the heteroduplex partners. We conclude that the variable region consists of imperfect tandem repeats of a sequence that evolves rapidly. This region might contain the origin of maxi-circle replication.     

Deciphering Spatial Protein–Protein Interactions in Brain Using Proximity Labeling

Cellular biomolecular complexes including protein–protein, protein–RNA, and protein–DNA interactions regulate and execute most biological functions. In particular in brain, protein–protein interactions (PPIs) mediate or regulate virtually all nerve cell functions, such as neurotransmission, cell–cell communication, neurogenesis, synaptogenesis, and synaptic plasticity. Perturbations of PPIs in specific subsets of neurons and glia are thought to underly a majority of neurobiological disorders. Therefore, understanding biological functions at a cellular level requires a reasonably complete catalog of all physical interactions between proteins. An enzyme-catalyzed method to biotinylate proximal interacting proteins within 10 to 300 nm of each other is being increasingly used to characterize the spatiotemporal features of complex PPIs in brain. Thus, proximity labeling has emerged recently as a powerful tool to identify proteomes in distinct cell types in brain as well as proteomes and PPIs in structures difficult to isolate, such as the synaptic cleft, axonal projections, or astrocyte–neuron junctions. In this review, we summarize recent advances in proximity labeling methods and their application to neurobiology.     

Biochemical and structural insights into intramembrane metalloprotease mechanisms

Intramembrane metalloproteases are nearly ubiquitous in living organisms and they function in diverse processes ranging from cholesterol homeostasis and the unfolded protein response in humans to sporulation, stress responses, and virulence of bacteria. Understanding how these enzymes function in membranes is a challenge of fundamental interest with potential applications if modulators can be devised. Progress is described toward a mechanistic understanding, based primarily on molecular genetic and biochemical studies of human S2P and bacterial SpoIVFB and RseP, and on the structure of the membrane domain of an archaeal enzyme. Conserved features of the enzymes appear to include transmembrane helices and loops around the active site zinc ion, which may be near the membrane surface. Extramembrane domains such as PDZ (PSD-95, DLG, ZO-1) or CBS (cystathionine-β-synthase) domains govern substrate access to the active site, but several different mechanisms of access and cleavage site selection can be envisioned, which might differ depending on the substrate and the enzyme. More work is needed to distinguish between these mechanisms, both for enzymes that have been relatively well-studied, and for enzymes lacking PDZ and CBS domains, which have not been studied. This article is part of a Special Issue entitled: Intramembrane Proteases.     

NAADP-induced intracellular calcium ion is mediated by the TPCs (two-pore channels) in hypoxia-induced pulmonary arterial hypertension

Pulmonary arterial hypertension (PAH) is a form of obstructive vascular disease. Chronic hypoxic exposure leads to excessive proliferation of pulmonary arterial smooth muscle cells and pulmonary arterial endothelial cells. This condition can potentially be aggravated by [Ca²⁺] _i mobilization. In the present study, hypoxia exposure of rat's model was established. Two-pore segment channels (TPCs) silencing was achieved in rats' models by injecting Lsh-TPC1 or Lsh-TPC2. The effects of TPC1/2 silencing on PAH were evaluated by H&E staining detecting pulmonary artery wall thickness and ELISA assay kit detecting NAADP concentrations in lung tissues. TPC1/2 silencing was achieved in PASMCs and PAECs, and cell proliferation was detected by MTT and BrdU incorporation assays. As the results shown, NAADP-activated [Ca²⁺]_i shows to be mediated via two-pore segment channels (TPCs) in PASMCs, with TPC1 being the dominant subtype. NAADP generation and TPC1/2 mRNA and protein levels were elevated in the hypoxia-induced rat PAH model; NAADP was positively correlated with TPC1 and TPC2 expression, respectively. In vivo, Lsh-TPC1 or Lsh-TPC2 infection significantly improved the mean pulmonary artery pressure and PAH morphology. In vitro, TPC1 silencing inhibited NAADP-AM-induced PASMC proliferation and [Ca²⁺]_i in PASMCs, whereas TPC2 silencing had minor effects during this process; TPC2 silencing attenuated NAADP-AM- induced [Ca²⁺]_i and ECM in endothelial cells, whereas TPC1 silencing barely ensued any physiological changes. In conclusion, TPC1/2 might provide a unifying mechanism within pulmonary arterial hypertension, which can potentially be regarded as a therapeutic target.