Global patterns in the shape of species geographical ranges reveal range determinants

Aim Do species range shapes follow general patterns? If so, what mechanisms underlie those patterns? We show for 11,582 species from a variety of taxa across the world that most species have similar latitudinal and longitudinal ranges. We then seek to disentangle the roles of climate, extrinsic dispersal limitation (e.g. barriers) and intrinsic dispersal limitation (reflecting a species’ ability to disperse) as constraints of species range shape. We also assess the relationship between range size and shape. Location Global. Methods Range shape patterns were measured as the slope of the regression of latitudinal species ranges against longitudinal ranges for each taxon and continent, and as the coefficient of determination measuring the degree of scattering of species ranges from the 1:1 line (i.e. latitudinal range = longitudinal range). Two major competing hypotheses explaining species distributions (i.e. dispersal or climatic determinism) were explored. To this end, we compared the observed slopes and coefficients of determination with those predicted by a climatic null model that estimates the potential range shapes in the absence of dispersal limitation. The predictions compared were that species distribution shapes are determined purely by (1) intrinsic dispersal limitation, (2) extrinsic dispersal limitations such as topographic barriers, and (3) climate. Results  Using this methodology, we show for a wide variety of taxa across the globe that species generally have very similar latitudinal and longitudinal ranges. However, neither neutral models assuming random but spatially constrained dispersal, nor models assuming climatic control of species distributions describe range shapes adequately. The empirical relationship between the latitudinal and longitudinal ranges of species falls between the predictions of these competing models. Main conclusions We propose that this pattern arises from the combined effect of macroclimate and intrinsic dispersal limitation, the latter being the major determinant among restricted‐range species. Hence, accurately projecting the impact of climate change onto species ranges will require a solid understanding of how climate and dispersal jointly control species ranges.     

基于景观生态学“源-汇”理论的市域尺度生态功能分区——以内蒙古通辽市为例

市域尺度的生态功能分区对于市域生态资源的有效保护和合理利用起着不可替代的指导作用。现阶段较为被动而静态的功能分区研究忽视了市域生态资源在城镇化发展中的剧烈变化。而景观生态学的"源-汇"概念和相关手段,将区域生态功能空间格局与不断变化的生态过程之间建立了联系,在生态功能分区科学理性的研究实践中运用前景广阔。运用景观生态学"源-汇"理论,以内蒙古通辽市为例,通过对于研究区域中"源"景观的划分,设定不同景观要素的阻力值,构建基于"源"动态特征的最小累计阻力模型,计算得出阻力面。并进一步通过寻找阻力面突变点来确定分区阈值,最终确定通辽市域尺度生态功能的5大分区,最后提出有针对性的分区管控措施与指引。研究将市域生态要素在城市化下的动态演变与生态安全格局进行有机关联并制定科学的分区策略,为市域生态空间的优化及管理提供了理论依据。     

Stability and structural constraints of random brain networks with excitatory and inhibitory neural populations

The stability of brain networks with randomly connected excitatory and inhibitory neural populations is investigated using a simplified physiological model of brain electrical activity. Neural populations are randomly assigned to be excitatory or inhibitory and the stability of a brain network is determined by the spectrum of the network’s matrix of connection strengths. The probability that a network is stable is determined from its spectral density which is numerically determined and is approximated by a spectral distribution recently derived by Rajan and Abbott. The probability that a brain network is stable is maximum when the total connection strength into a population is approximately zero and is shown to depend on the arrangement of the excitatory and inhibitory connections and the parameters of the network. The maximum excitatory and inhibitory input into a structure allowed by stability occurs when the net input equals zero and, in contrast to networks with randomly distributed excitatory and inhibitory connections, substantially increases as the number of connections increases. Networks with the largest excitatory and inhibitory input allowed by stability have multiple marginally stable modes, are highly responsive and adaptable to external stimuli, have the same total input into each structure with minimal variance in the excitatory and inhibitory connection strengths, and have a wide range of flexible, adaptable, and complex behavior.     

Neural Population Structures and Consequences for Neural Coding

Researchers studying neural coding have speculated that populations of neurons would more effectively represent the stimulus if the neurons "cooperated:" by interacting through lateral connections, the neurons would process and represent information better than if they functioned independently. We apply our new theory of information processing to determine the fidelity limits of simple population structures to encode stimulus features. We focus on noncooperative populations, which have no lateral connections. We show that they always exhibit positively correlated responses and that as population size increases, they perfectly represent the information conveyed by their inputs regardless of the individual neuron's coding scheme. Cooperative populations, which do have lateral connections, can, depending on the nature of the connections, perform better or worse than their noncooperative counterparts. We further show that common notions of synergy fail to capture the level of cooperation and to reflect the information processing properties of populations.     

Species extinction and permanence of an impulsively controlled two-prey one-predator system with seasonal effects

Recently, the population dynamic systems with impulsive controls have been researched by many authors. However, most of them are reluctant to study the seasonal effects on prey. Thus, in this paper, an impulsively controlled two-prey one-predator system with the Beddington–DeAngelis type functional response and seasonal effects is investigated. By using the Floquet theory, the sufficient conditions for the existence of a globally asymptotically stable two-prey-free periodic solution are established. Further, it is proven that this system is permanent under some conditions via a comparison method involving multiple Lyapunov functions and meanwhile the conditions for extinction of one of the two prey and permanence of the remaining two species are given.     

The design of a peptide sequence to inhibit HIV replication: a search algorithm combining Monte Carlo and self-consistent mean field techniques

We developed a search algorithm combining Monte Carlo (MC) and self-consistent mean field techniques to evolve a peptide sequence that has good binding capability to the anticodon stem and loop (ASL) of human lysine tRNA species, tRNA^Lys3, with the ultimate purpose of breaking the replication cycle of human immunodeficiency virus-1. The starting point is the 15-amino-acid sequence, RVTHHAFLGAHRTVG, found experimentally by Agris and co-workers to bind selectively to hypermodified tRNA^Lys3. The peptide backbone conformation is determined via atomistic simulation of the peptide-ASL^Lys3 complex and then held fixed throughout the search. The proportion of amino acids of various types (hydrophobic, polar, charged, etc.) is varied to mimic different peptide hydration properties. Three different sets of hydration properties were examined in the search algorithm to see how this affects evolution to the best-binding peptide sequences. Certain amino acids are commonly found at fixed sites for all three hydration states, some necessary for binding affinity and some necessary for binding specificity. Analysis of the binding structure and the various contributions to the binding energy shows that: 1) two hydrophilic residues (asparagine at site 11 and the cysteine at site 12) “recognize” the ASL^Lys3 due to the VDW energy, and thereby contribute to its binding specificity and 2) the positively charged arginines at sites 4 and 13 preferentially attract the negatively charged sugar rings and the phosphate linkages, and thereby contribute to the binding affinity.     

恢复生态学焦点问题

就恢复生态学的概念、近期的发展趋势与前沿命题、传统生态学理论在生态恢复过程中的应用及恢复生态学的社会性等核心问题展开论述。恢复生态学是一门年轻的学科,迄今尚无统一的定义。代表性的有3方面的学术观点。第1种强调受损的生态系统要恢复到理想的状态;第2种强调其应用生态学过程;第3种强调生态整合性恢复。笔者认为,恢复生态学是研究生态系统退化的原因、退化生态系统恢复与重建的技术与方法、过程与机理的科学。从近年的国际恢复生态学大会来看,恢复生态学研究近期主要有3个方面的发展趋势。一是强调自然恢复与社会、人文的耦合。认为恢复生态是全球性的,不只是自然的过程,应有全社会的支持,包括政治、经济和人文的介入。二是强调无论是在地域上还是在理论上都要跨越边界。有效的生态恢复实践在地域上要求多地区甚至是多国家的合作,在理论上要求多学科的交叉与耦合。三是强调以生态系统为基点,在景观尺度表达。随着环境和经济问题的全球化,生态系统和景观尺度的恢复生态学研究引起了越来越多的关注。2004年第15届国际恢复生态学大会的会议主题已定为：恢复、景观与设计。在当前研究趋势的基础上,提出了恢复生态学当前研究的6个前沿命题：恢复生态学的学科理论框架研究、恢复生态系统的功益研究、生物多样性在生态恢复中的作用研究、生态恢复对全球变化的响应研究、生态恢复立法研究和生态恢复与社会、经济的整合性研究。退化生态系统的恢复与重建是一项十分复杂的系统工程,尤其需要生态学理论的指导。多数生态学理论已被应用于恢复生态学的研究与实践。结合实例,着重阐述了生态系统演替理论在生态恢复中的应用。恢复生态与全球变化间的相互作用研究越来越多的引起了人们的关注,但多数研究仍停滞在定性研究阶段。在广东的恢复生态学研究表明,广东省从1986年至1998年,植被覆盖从26％到51％,新造林绿化的植被每年可吸收、固定广东省年排放CO2量的一半。人类社会与自然环境的协调可持续发展,不仅要求实现生态环境的可持续,同时亦要求实现人类社会与经济的可持续发展。这就要求生态系统的恢复与重建必须同时实现生态、经济与社会效率的三重优化。中国科学院华南植物研究所生态中心在中国热带、南亚热带进行的退化生态系统的恢复与重建研究历时30余年,所产生的显著的经济和社会效益,在各个实验站点均已有所反映。     

Costs of jasmonate-induced responses in plants competing for limited resources

We present a design to quantify fitness consequences of jasmonate-induced responses in plants that are competing for limited resources with a conspecific. Under both high and low nitrogen supply rates, uninduced (control) Nicotiana attenuata plants growing next to a plant induced with 250 μg methyl jasmonate (MJ) yielded more seed capsules than control plants competing with another control plant. We conclude that there is a opportunity benefit for control plants growing next to an induced plant. Initially, MJ-induced plants grew more slowly, but by senescence they had produced the same number of seed capsules as control plants that had competed with another control plant. Replacement series showed that the fitness of MJ-induced plants is not influenced by the competitive status of their neighbour plant. We argue that competitive designs are useful tools for evaluating the phenotypic costs of ecologically important traits.     

Absolute Configuration Assignment of a Paraconic Acid Derivative via Vibrational Circular Dichroism Spectroscopy and Density Functional Theory Calculation

Density functional theory calculation of the vibrational circular dichroism spectrum was used to assign the absolute configuration of an all‐carbon quaternary β‐stereocenter of a γ‐butyrolactone recently synthesized through an asymmetric organocatalytic tandem aldol/lactonization sequence. Comparison with the experimental spectrum is satisfactory, on account of the fact that spectroscopic features are weak due to the presence of multiple conformers. As a result, the (R) absolute configuration was assigned to the (+) optical isomer. Chirality 28:110–115, 2016. © 2015 Wiley Periodicals, Inc.     

生态群落物种共存的进化机制

本文概述了目前对生态群落的物种共存研究中存在的若干问题及动、植物群落物种共存机制的研究进展。植物群落的物种共存主要介绍与环境、种子再迁移、生态位分化、竞争平衡理论、种库假设、再生生态位等有关的几种假设、生态学上相似种的共存及“原”群落概念等。动物群落的物种共存机制主要从以下几方面叙述：（1）异质环境中的资源分割,主要指动物斑状滋养的不同利用;（2）避免竞争排斥的行为机制,如边缘效应、聚群效应、扩散行为、相互作用和干扰;（3）特化者和泛化者的共存,包括：竞争是物种向多功能进化的作用力、最佳觅食理论与生态学特化及特化概念的发展。最后指出进一步研究的方向。