Phylogeography of Emerita analoga (Crustacea,Decapoda, Hippidae), an eastern Pacific Ocean sand crab with long‐lived pelagic larvae

Aim Phylogeographic analyses have confirmed high dispersal in many marine taxa but have also revealed many cryptic lineages and species, raising the question of how population and regional genetic diversity arise and persist in dynamic oceanographic settings. Here we explore the geographic evolution of Emerita analoga, an inter‐tidal sandy beach crab with an exceptionally long pelagic larval phase and wide latitudinal, amphitropical, distribution. We test the hypothesis that eastern Pacific E. analoga constitute a single panmictic population and examine the location(s), timing and cause(s) of phylogeographic differentiation. Location Principally the eastern Pacific Ocean. Methods We sequenced cytochrome c oxidase subunit I (COI) from 742 E. analoga specimens collected between 1997 and 2000 and downloaded homologous sequences of congeners from GenBank. We reconstructed a phylogeny for Emerita species using maximum likelihood and Bayesian methods and estimated times to most recent common ancestors (TMRCAs), using a COI divergence rate of 1% Myr^?1 and timing of closure of the Central American Seaway. We constructed the COI haplotype network of E. analoga using statistical parsimony, calculated population genetic and spatial structure statistics in Arlequin , and estimated the demographic history of E. analoga using Bayesian skyline analysis. Results Population subdivision and allele frequency differences were insignificant among north‐eastern Pacific locations over 2000 km apart (Φ_ST = 0.00, P = 0.70), yet two distinct phylogroups were recovered from the north‐eastern and south‐eastern Pacific (Φ_CT = 0.87, P < 0.001). Amphitropical differentiation of these temperate clades occurred after TMRCA 1.9 ± 0.02 (mean ± SE) Ma and E. analoga has expanded into its present‐day north‐eastern Pacific range since c. 250 ka. Main conclusions Emerita analoga is not panmictic but is very widely dispersed and approaching genetic homogeneity, i.e. ‘eurymixis’, in the north‐eastern Pacific. North‐eastern and south‐eastern Pacific populations of E. analoga probably became isolated c. 1.5 Ma as the tropical eastern Pacific Ocean warmed and expanded, intensifying barriers to gene flow. The fragmentation of a widespread ancestral species previously connected by long‐distance gene flow (‘soft vicariance’) coincident with changing oceanographic conditions may be a common theme in the evolution of Emerita species and in other highly dispersive taxa. Highly dispersive species may differentiate because of, not despite, the dynamic oceanographic setting.     

Seasonal variation of nitrogen transformations in the pelagial of selected nearshore waters of the Baltic Sea with emphasis on the particulate pool

Physical and chemical conditions, particulate matter and N-uptake were characterized at two sampling sites at the eastern German coast of the Baltic Sea (Pomeranian Bay) over the annual period of 1997 (February–November). The inshore sampling sites (5 m water depth) differed with respect to the potential influences of river run-off and salt water exchange (mean values of salinity: 7.05 and 8.72 PSU), respectively. The mean org-C_diss/org-C_part-ratios (4.9 and 12.6) fell in the same order of magnitude (1.0–12.6) as values of neighboring inshore waters, and increasing values reflect an enhancement of the trophic level. Beside differences of nitrogen concentrations (dissolved inorganic nitrogen: 1.8–23.8 and 0.9–9.9 mol l^–1), particulate nitrogen (4.30–41.01 and 2.69–9.08 mol l^–1) and absolute uptake of N-nutrients (mean sum of NH₄ ⁺, urea, NO₃ ^– uptake rates: 0.141 and 0.087 mol l^–1 h^–1), specific uptake of ¹⁵N-labelled nutrients (NH₄ ⁺, urea, NO₃ ^–) as well as the relationships between the measured variables characterize distinguishable inshore systems. The high variability at the shallow sampling sites prevents, however a simple resolution of the seasonal courses. Light dose could be identified as a potential key in order to describe long-term variations of N-uptake at the station with higher organic matter concentration (station KW), but phytoplankton development is better reflected in the seasonal course of N-uptake at the other station. Specific nitrogen uptake rates (NH₄ ⁺: 0.0009–0.0353 h^–1, urea: 0.0001–0.0137 h^–1, NO₃ ^–: 0.000004–0.0009 h^–1) and relative nitrogen preferences indicate extraordinary importance of reduced nitrogenous nutrients (NH₄ ⁺, urea) at both stations throughout the year.     

滨海盐土土壤水分的高光谱参数及估测模型

基于滨海盐土5个试验点的土壤含水量和室内土壤表面高光谱反射率,综合分析了350～2500 nm波段范围内土壤含水量与土壤光谱之间的关系,并基于比值光谱指数(RSI)、归一化光谱指数(NDSI)和差值光谱指数(DI)确定了光谱参数,进而构建土壤含水量估测定量模型.结果表明： 滨海盐土原始光谱反射率与土壤含水量呈显著负相关关系,且最大负相关出现在1930 nm(r=0.86)附近.对RSI、NDSI和DI的直线回归方程、幂函数回归方程进行对比,以RSI(R₁₄₀₇,R₁₄₅₉)为自变量构建的土壤含水量指数函数线性回归方程决定系数最大(0.780),标准误较小(0.016),拟合方程为y=0.00001e^9.72053x.估测模型能够更好地监测滨海盐土土壤水分状况.基于RSI(R₁₄₀₇,R₁₄₅₉)构建的模型可实现对江苏省滨海盐土土壤水分的精确监测.     

Morphological and physiological responses of Scaevola sericea (Goodeniaceae) seedlings to salt spray and substrate salinity

The effects of substrate salinity and salt spray upon seedlings of Scaevola sericea were examined in this study. Three levels of substrate salinity: 0.0 ppt, 3.0 ppt, and 10.0 ppt were examined in conjunction with three levels of salt spray: zero, medium (200 mg m^-2mdd^-1), and high (1200–1500 mg-m^-2mdd^-1). Leaf surface area, root to shoot ratio, as well as leaf, stem, and root mass decreased significantly (P 0.05) with increasing substrate salinity. Biomass accumulation was very low at 10.0 ppt substrate salinity, suggesting that higher levels of substrate salinity cannot be tolerated by the seedlings. Salt spray had a substantial effect on several of these variables, however its effects were less pronounced than those of substrate salinity. Cell sap osmolarity, leaf thickness, and leaf specific mass increased significantly (P 0.05) with both increasing substrate salinity and salt spray levels. Leaf carbon isotope ratios (δ^l3C) became more positive with increasing salinity, indicating an enhancement of the intrinsic water use efficiency of the seedlings at higher salinities. Scaevola sericea is one of the dominant plants found at the leading edge of strand communities in the Hawaiian archipelago and throughout much of the tropical Pacific. Since substrate salinity and salt spray increase with proximity to the ocean, the two factors may act together to limit the seaward expansion of S. sericea in coastal habitats.     

Establishment and Management of Native Functional Groups in Restoration

The limiting similarity hypothesis predicts that communities should be more resistant to invasion by non‐natives when they include natives with a diversity of traits from more than one functional group. In restoration, planting natives with a diversity of traits may result in competition between natives of different functional groups and may influence the efficacy of different seeding and maintenance methods, potentially impacting native establishment. We compare initial establishment and first‐year performance of natives and the effectiveness of maintenance techniques in uniform versus mixed functional group plantings. We seeded ruderal herbaceous natives, longer‐lived shrubby natives, or a mixture of the two functional groups using drill‐ and hand‐seeding methods. Non‐natives were left undisturbed, removed by hand‐weeding and mowing, or treated with herbicide to test maintenance methods in a factorial design. Native functional groups had highest establishment, growth, and reproduction when planted alone, and hand‐seeding resulted in more natives as well as more of the most common invasive, Brassica nigra. Wick herbicide removed more non‐natives and resulted in greater reproduction of natives, while hand‐weeding and mowing increased native density. Our results point to the importance of considering competition among native functional groups as well as between natives and invasives in restoration. Interactions among functional groups, seeding methods, and maintenance techniques indicate restoration will be easier to implement when natives with different traits are planted separately.     

The Role of Natural Enemies in the Germination and Establishment of Pachira (Malvaceae) Trees in the Peruvian Amazon

Seeds from Pachira brevipes from white‐sand forest and Pachira insignis from clay forest were placed in a reciprocal transplant experiment that manipulated herbivore presence. Pachira insignis experienced 80 percent leaf loss in both habitats from herbivores, causing 79 percent mortality in white‐sand compared with 47 percent in clay in just 3 mo. Pachira brevipes suffered pathogen attack in both habitats that killed 90 percent of its establishing seedlings. Natural enemies thus strongly influence seedling recruitment of these two Pachira species in these forests and appear to have the largest impact within the seedlings' first few months.     

Taxonomy,morphology and molecular systematics of a new oligotrich ciliate,Williophrya maedai gen. nov., sp. nov., with redescriptions of Strombidium basimorphum and Pseudotontonia simplicidens (Protozoa,Ciliophora, Oligotrichia)

The morphology and small subunit rRNA (SSrRNA) gene sequence of a marine oligotrich ciliate, Williophrya maedai gen. nov., sp. nov., are reported. The new genus Williophrya is characterized by the adoral zone with no differentiation of membranelles, and the reduced somatic ciliature which comprises a bipartite girdle kinety only. In addition, the in vivo morphologies of two other oligotrichs, namely Strombidium basimorphum Martin & Montagnes, 1993 and Pseudotontonia simplicidens (Lynn & Gilron, 1993 Lynn, D. H. and Gilron, G. L. 1993. Strombidiid ciliates from coastal waters near Kingston Harbour, Jamaica (Ciliophora, Oligotrichia, Strombidiidae). Journal of the Marine Biological Association of the United Kingdom, 73: 47–65. [Crossref] , [Google Scholar]) Agatha, 2004, are reported for the first time based on Chinese populations. Improved diagnoses of both species are supplied. The phylogenetic position of Williophrya maedai is investigated based on SSrRNA gene sequence data. These show that: (1) Williophrya maedai is most closely related to Strombidium purpureum and S. apolatum; (2) Williophrya is assigned to the family Strombidiidae although it has some unique morphological features regarding its oral and somatic ciliatures.     

Ecological Restoration and Large-Scale Ecological Disturbance: The Effects of Drought on the Response by Fish to a Habitat Restoration Experiment

Human‐induced erosion regularly delivers massive quantities of fine sediments into streams and rivers forming large static bodies of sediment known as sand slugs, which smother in‐stream habitat, alter community structure, and decrease biodiversity. Sand slugs are widespread in parts of southeastern Australia as well as in many other parts of the world, and there is now considerable interest in restoring such affected streams. The reintroduction of large timber is widely suggested as a strategy for restoring habitat complexity, but this has rarely been tested in sand slug–affected streams. We examined the response of fish populations to wood addition to two streams in southeastern Australia that have been impacted by sand slugs. Manipulated sites (three per treatment) had either one or four timber structures added, and these sites were compared with (three) unmanipulated (control) sites before and after the manipulation occurred. Despite a supraseasonal drought during the study, we observed short‐term increases in the abundance of Mountain galaxias (Galaxias olidus) at the four‐structure sites, while both the four‐structure and the one‐structure treatments appeared to buffer against drought‐induced declines in two other species, River blackfish (Gadopsis marmoratus) and Southern pygmy perch (Nannoperca australis), relative to controls. However, drought eventually caused the complete loss of surface water from these streams and the loss of fish from both manipulated and unmanipulated sites. Thus, although the study supports the use of timber structures as a means of increasing local fish abundances, these beneficial effects were, in these streams, contingent upon permanency of flow. Because sedimentation has depleted the number of permanent refuge pools in these creeks, recovery rates of the fauna (i.e., resilience) are likely to be slow. We therefore conclude that in streams subjected to frequent disturbance, restoring refugia may be as, if not more, important as restoring what we term residential habitat.     

Isolation, characterization and cross-species testing of microsatellites obtained from a sand smelt (Atherina boyeri) genomic library

This study reports the isolation and characterization of 11 polymorphic microsatellites from a sand smelt (Atherina boyeri) genomic library. Enrichment was performed with di-, tri- and tetranucleotide motifs following the FIASCO procedure (fast isolation by AFLP of sequences containing repeats). All loci were found to be in linkage and in Hardy-Weinberg equilibrium. This represents the first microsatellite isolation for the family Atherinidae and the isolated loci were accordingly tested on four additional species of the family: two recognized (A. presbyter and A. hepsetus) and two proposed ('punctata' and 'non-punctata' forms). Moreover their cross-species suitability on Menidia menidia, belonging to the same order but to the family Atherinopsidae, was also tested.     

Mechanical Land Clearing to Promote Establishment of Coastal Sandplain Grassland and Shrubland Communities

The decline in grasslands and other species‐rich early successional habitats on the coastal sandplains of the northeastern United States has spurred management to increase the area of these declining plant communities. We mechanically removed overstory oak and applied seed from a nearby sandplain grassland on the island of Martha’s Vineyard, Massachusetts, to evaluate this technique for creating an open oak community able to support sandplain herbaceous species. We compared vegetation structure and composition before and after clearing in an area of total tree removal (clearcutting), an area where 85% of tree basal area was removed (savanna cutting), and in adjacent coastal oak forest. Plant responses to clearcutting and savanna cutting were similar. Sandplain herbs colonized at high frequencies after seeding and increased herbaceous cover from less than 7% before clearing to 22–38% three growing seasons later. Pennsylvania sedge (Carex pensylvanica) increased in cover approximately 6‐fold, accounting for 84–90% of the increased herbaceous cover. Other native ruderals and exotic herbs reached 2 and less than or equal to 1%, cover, respectively, after three years. Species richness across cleared treatments increased from 30 to 79 species. All forest species were retained. Forest shrubs and trees initially declined from their dominant cover but rebounded after three years. Tree clearing plus seeding appeared to be a viable management practice for increasing cover of herbaceous sandplain species while causing minimal increases in exotic herbaceous cover. The long‐term persistence of sandplain herbs may require periodic disturbances that limit woody regrowth.