Distribution and Contamination Status of Trace Metals in the Mediterranean Coastal Sediments,Egypt

Trace metals concentrations in sediments from the Egyptian Mediterranean coast were determined to evaluate the levels of contamination. The highest concentrations of metals were generally found in the middle region of the coast. Sediment pollution assessment was carried out using Enrichment Factor (EF), Geoaccumulation Factor (Igeo), Contamination Factor (CF), Modified Degree of Contamination (mCd), and Pollution Load Index (PLI). Association of adverse effects to aquatic life was determined using the classification of sediments according to three sets of sediment quality guidelines. The mean EF values were found to fall in the following sequence: Cr > Pb > Ni > Zn > Cu > Mn. The results demonstrated that the EF of metals in the sediments of the middle region was lower than those recorded in the western region and Rafah Station at the eastern region; the difference in the EF levels was significantly correlated with Fe concentrations along the study area. Based on the average Igeo of target elements, the Egyptian Mediterranean coast could be considered not polluted with Cr, Cu, Mn, Ni, Pb, and Zn (Igeo ≤ 0). The modified degree of contamination was >1.5, indicating zero to very low contamination. The calculated PLI were less than 1, indicating only baseline levels of pollution. There were small differences between the results obtained with the three used SQGs. Highly significant correlations were found between the concentrations of Fe, Mn, Co, Cr, and Ni, suggesting similar sources and/or similar geochemical processes controlling the occurrence of these metals in the sediments.     

Isolation and characterization of microsatellite loci in the blue manakin,Chiroxiphia caudata (Aves,Pipridae)

We designed primers for amplifying 11 polymorphic microsatellite loci in the blue manakin, Chiroxiphia caudata, a neotropical passerine bird which inhabits a critically endangered tropical ecosystem, the Brazilian Atlantic forest. Based on genotypes from 24 individuals from a single population, we detected between four and 22 alleles per locus with observed heterozygosities ranging from 0.54 to 0.92. These highly variable loci will be useful for determining levels of population differentiation and assessing the impact of habitat fragmentation on levels of genetic variation in isolated populations of these birds.     

Influence of hurricanes on coastal ecosystems along the northern Gulf of Mexico

Available literature indicates that hurricanes do not generally produce long-term detrimental impacts to unmodified coastal systems and that they often provide net benefits along the U.S. Gulf Coast. While there is normally initial erosion from hurricanes, they also often result in a large influx of inorganic sediments, creating new wetlands and contributing to the maintenance of existing wetlands. The formation of washover deposits is disastrous where cultural development has occurred, but in natural areas these deposits are part of the natural cycle of shoreline development and contribute to habitat diversity and productivity. Abundant rainfall typically associated with hurricanes often results in large increases of sediment and nutrient inputs into coastal estuaries, leading to both short-term and long-term increases in productivity. Rainfall during tropical disturbances accounts for a significant part of total precipitation along the northern gulf. The immediate impact of hurricanes may be to reduce populations of some species but these populations generally recover rapidly. Overall, productivity in natural systems seems to be increased by periodic hurricanes. Hurricane impacts are often severe and long lasting in wetlands that have been modified by human impacts such as semi- or complete impoundments.     

Trace Elements in Edible Rocky Shore Species: Effect of Sewage Discharges and Human Health Risk Implications

Sewage pollution is a worldwide concern and can result in increasing levels of trace elements in the environment that can pose serious risks both to wildlife and human health. This highlights the importance of studying the role of sewage discharges in the contamination of aquatic systems, especially in rocky shores, since part of our food resources is directly collected from coastal waters. For this purpose, the accumulation of trace elements (Cu, Zn, Pb, Ni, Co, Cd, Fe, Mn, and As) by edible molluscs (Mytilus galloprovincialis, Patella ulyssiponensis, and Phorcus lineatus) was compared between one sewage-impacted area and two reference areas.

This study suggests that the concentrations of trace elements in the soft tissues of the selected molluscs can be affected by the presence of sewage discharges, and that limpets seem to be the best bioindicator. Moreover, the sewage pollution increased the concentrations of As in the mollusc species, emphasizing its potential damaging effects on natural systems and on edible species.     

Population genetic structuring of the king weakfish, Macrodon ancylodon (Sciaenidae), in Atlantic coastal waters of South America: deep genetic divergence without morphological change

Phylogeographic patterns in Macrodon ancylodon sampled from 12 locations across all its range were investigated using mitochondrial DNA cytochrome b sequences, and analysed together with patterns of morphometric differentiation. Populations of the North Brazil and the Brazil currents, with warmer waters, form a clade (tropical clade) separated by 23 fixed mutations from the populations that inhabit regions of colder waters influenced by the Brazil and Malvinas currents (subtropical clade). No gene flow exists between the tropical and subtropical clades, and most likely also between the two groups of the tropical clade. Distribution of these clades and groups is correlated with flow of currents and their temperatures, and is facilitated by larval retention and low adult migration. Despite differentiation at the molecular level, fishes analysed from all these current-influenced regions are morphometrically homogeneous. Throughout its range M. ancylodon inhabits the same, or very similar niche; thus, stabilizing selection probably promotes the retention of highly conserved morphology despite deep genetic divergence at the mitochondrial DNA cytochrome b.     

杭州湾南岸大桥建设区域潮间带大型底栖动物功能群及营养等级的季节动态

2006年5月至2007年1月在杭州湾南岸跨海大桥附近潮滩共采集到32种大型底栖动物,根据其食性类型划分为5种功能群。用功能群方法对这些物种生境变化的关系进行了分析,结果表明:大型底栖动物各多样性指数在潮带间差异显著,季节间则只有Margalef种类丰度(S)和Shannon-Wiener指数(H′)存在显著性差异;各功能群密度在季节间均不存在显著性差异,而在潮带间除了浮游生物食者外,其它类群均存在显著性差异;肉食者的种类数在潮带间不存在显著性差异,而在季节间存在显著性差异,其它功能群刚好相反。滩涂大型底栖动物群落主要包括4个营养级别,各营养级的构成密度在季节间差异不显著,在潮带间则差异显著;各营养级种类数是处于第四级的肉食者季节间差异显著,潮带间变化不显著,处于第二、三营养等级的功能群则正好相反。底栖动物功能群多样性综合反映了杭州湾南岸大桥建设区域潮间带大型底栖动物群落变化情况。     

沙质海岸黑松分枝格局特征及其抗风折能力分析

沙质海岸空间梯度上环境差异较大, 黑松(Pinus thunbergii)在长期的适应过程中树冠结构变化也很大。为揭示黑松树冠结构与环境间的适应机制, 在山东省胶南市灵山湾国家森林公园距海岸线0-50、200-250和400-450 m梯度内各设置1个样带, 记为带I、带II、带III, 采用枝构型的理论和方法, 对黑松的分枝格局进行了研究, 并采用模拟自然风法测定了黑松枝条的抗风折能力。结果表明: 1)在海岸梯度上黑松分枝格局差异较大, 随着距离海岸越来越远, 黑松各级枝的分枝长度、总体分枝率均逐渐增大, 而枝径比和逐步分枝率逐渐减小, 各级分枝角度表现为带I >带III >带II。2)带I树冠背风面与迎风面相比, 分枝长度、分枝角度、分枝数量、枝条干枯率分别是迎风面的1.62、1.38、2.65和0.59倍, 随着距离海岸越来越远, 这种不对称性逐渐减弱, 至带III树冠基本对称。3)海风是影响带I分枝角度偏转、枝条干枯和冠型不对称现象的主要原因。4)带III枝条的抗风折能力高于带I, 且两个样带模拟风速与枝条所承受的拉力之间的关系均符合逻辑斯蒂方程, 相关系数R²均达0.97以上。该研究揭示了不同海岸梯度上黑松分枝格局的形成机制及其抗风折能力, 可为沿海黑松防护林的合理经营提供科学依据。     

Applicability of massively parallel sequencing on monitoring harmful algae at Varna Bay in the Black Sea

In this study the plankton diversity in 13 environmental samples from Varna Bay (in the western Black Sea) was analyzed using massively parallel sequencing (MPS). This preliminary study was undertaken to assess the potential of this technology for future implementation in monitoring programs in the Black Sea. Amplicon sequences of the 18S rRNA gene (V4-5 regions) were obtained using the Illumina MiSeq 250PE platform. A total of 1137 operational taxonomic units (OTUs) were obtained among which 242 OTUs with >0.990 BLAST top hit similarity (21.3% of all detected OTUs) closely related to sequences belonging to −protists. A large portion (175 OTUs = 72.3%) was identified at the species levels, including species typical for the Bulgarian Black Sea plankton community, as well as many that haven’t been reported earlier in the Bulgarian Black Sea coast (124 OTUs = 51.2%). Dinoflagellates were represented by the highest species number (77 OTUs comprising 31.8% of protist species), with dominant genera Gyrodinium and Heterocapsa. The present survey revealed the presence of 12 species listed as harmful, some of which have been previously overlooked, such as Cochlodinium polykrikoides, Karenia bicuneiformis, and Karlodinium veneficum. Species identification was possible for 10.3–36.0% of the detected OTUs in the six major supergroups. The frequency in Rhizaria was significantly lower than that in other major groups (p < 0.05–0.01), implying difficulties in the classification from morphology-based observations. The metagenetic data had an insufficient resolution of the 18S rRNA gene for species identification in many genera. These issues may hamper the implementation of MPS-based surveys for plankton monitoring, especially for detecting harmful algal blooms (HAB). The sequencing technology is steadily improving and it is expected that sequence length and quality issues will be resolved in the near future. The ongoing efforts to register taxonomic information and quality controls in the international nucleotide sequence databases (INSDs) will be essential for improving taxonomic identification power.