A new extrinsic sample mean in the shape space with applications to the boundaries of anatomical structures

Shape analysis is of great importance in many fields of medical imaging and computational biology. In this paper, we consider the shape space as the set of smooth planar immersed curves in (parameterized curves) and, using the property of being isometric to a classical manifold immersed in a Euclidean space, we introduce a new extrinsic sample mean and a new extrinsic variance for a finite set of shapes, which are not necessarily star shaped. This is a fundamental tool in medical image analysis, for instance, to assess uncertainties that arise in locating anatomical structures such as the prostate and the bladder. We apply it to a dataset consisting of parallel planar axial CT sections of human prostate, in order to study the variability between boundaries that have been manually delineated by several observers.     

菊芋耐性胁迫及种质保存研究进展

菊芋(Helianthus tuberous L.)属菊科向日葵属多年生草本植物,是重要的作物种质资源。国内外对菊芋已开展了生态、经济、能源及育种栽培等研究,近年来胁迫条件对菊芋的影响研究成为新的热点。菊芋是无性繁殖作物,目前对菊芋种质资源的保存主要采取田间圃位的形式,国外已经开展了试管苗保存和超低温保存等研究,而我国尚存在空白。本文着重从菊芋的胁迫耐性响应研究,包括干旱、盐碱及低温3个不同胁迫条件对田间性状、生理生化、蛋白、分子水平的研究,以及常规保存和离体保存等种质保存研究2个方面进行阐述,并指出目前存在的问题,为菊芋超低温保存和开发利用提供理论依据。     

Aspects of population dynamics and feeding by piscivorous birds in the intermittently open Riet River estuary,Eastern Cape,South Africa

Aspects of the population dynamics and feeding activity of piscivorous birds in the small (c. 5 ha) intermittently open Riet River estuary, on the south-eastern coastline of South Africa, were investigated monthly from August 2005 to July 2006. A total of 188 birds of 13 species were recorded, of which six were wading piscivores, four aerial divers and three were pursuit swimmers. The Reed Cormorant (Phalacrocorax africanus) was the numerically dominant species, with a mean of 8.25 (SD ± 7.90) individuals per count. Mean numbers of the Pied Kingfisher (Ceryle rudis) and Giant Kingfisher (Megaceryle maximus) were 3.42 (SD ± 1.20) and 1.17 (SD ± 0.60) individuals per count, respectively. The remaining 10 species revealed mean values <0.5 individuals per count. Breaching events were associated with a change in feeding groups from waders to pursuit feeders, and a decrease in total bird numbers, most likely due to loss of potential littoral zone foraging habitat for waders resulting from reduced water levels. The highest bird numbers were recorded in winter reflecting the migration of large numbers of Reed Cormorant into the system. Monthly food consumption by all piscivorous birds showed large temporal variability, ranging from 26.35 to 140.58 kg per month.     

Nursery Culture Impacts Cold Hardiness in Longleaf Pine (Pinus palustris) Seedlings

Success in restoring longleaf pine ecosystems depends on outplanting high‐quality longleaf pine seedlings. One important and relatively understudied attribute of seedling quality is cold hardiness. A suite of trials was conducted to investigate the influence of common nursery cultural practices on longleaf pine cold hardiness. Cold hardiness was increased with higher rates of nitrogen, unaffected by copper coating containers, greater for foliage than for root‐collar tissue, and tended to increase with increases in container size.     

Size,sex and seasonal patterns in the assemblage of Carcharhiniformes in a sub‐tropical bay

Size, sex and seasonal patterns among Carcharhiniformes were examined in shallow regions of Moreton Bay, Queensland, Australia. A total of 1259 sharks were caught, comprising 13 species. The Australian sharpnose shark Rhizoprionodon taylori and the blacktip complex Carcharhinus limbatus–Carcharhinus tilstoni comprised 55% of all shark individuals. Neonates were observed for five species including the dusky shark Carcharhinus obscurus, which contrary to previous reports was relatively abundant in shallow, predominantly estuarine waters. Three contrasting patterns of occurrence were observed: smaller species were abundant and present throughout much of their ontogeny, larger species were mainly caught as neonates or juveniles and vagrant species were only caught during the warmer months. The shark assemblage differed significantly among seasons. While many species were observed during the warmer months, species diversity was lower in winter when C. obscurus comprised 43% of the catch. Overall, the results indicated that spatial and temporal distribution patterns were not synchronous for all species. The capture of small numbers of neonate C. obscurus in late autumn and winter demonstrates that parturition among Carcharhiniformes is not confined to spring and summer in sub‐tropical waters.     

Loop Fold Structure of Proteins: Resolution of Levinthal's Paradox

Abstract

According to Levinthal a protein chain of ordinary size would require enormous time to sort its conformational states before the final fold is reached. Experimentally observed time of folding suggests an estimate of the chain length for which the time would be sufficient. This estimate by order of magnitude fits to experimentally observed universal closed loop elements of globular proteins—25–30 residues.     

Coccolithophorid algae culture in closed photobioreactors

The feasibility of growth, calcium carbonate and lipid production of the coccolithophorid algae (Prymnesiophyceae), Pleurochrysis carterae, Emiliania huxleyi, and Gephyrocapsa oceanica, was investigated in plate, carboy, airlift, and tubular photobioreactors. The plate photobioreactor was the most promising closed cultivation system. All species could be grown in the carboy photobioreactor. However, P. carterae was the only species which grew in an airlift photobioreactor. Despite several attempts to grow these coccolithophorid species in the tubular photobioreactor (Biocoil), including modification of the airlift and sparger design, no net growth could be achieved. The shear produced by turbulence and bubble effects are the most likely reasons for this failure to grow in the Biocoil. The highest total dry weight, lipid and calcium carbonate productivities achieved by P. carterae in the plate photobioreactors were 0.54, 0.12, and 0.06 g L⁻¹ day⁻¹ respectively. Irrespective of the type of photobioreactor, the productivities were P. carterae > E. huxleyi > G. oceanica. Pleurochrysis carterae lipid (20–25% of dry weight) and calcium carbonate (11–12% of dry weight) contents were also the highest of all species tested. Biotechnol. Bioeng. 2011;108:2078–2087. © 2011 Wiley Periodicals, Inc.     

Shorebird Abundance Estimates in Interior Alaska

Interior Alaska, USA, is the least-studied region in Alaska for breeding shorebirds because of challenging accessibility and expectations of low densities and abundances. We estimated lowland and upland shorebird population sizes on 370,420 ha of military lands in interior Alaska boreal forest from May–July 2016 and 2017. We modified the Program for Regional and International Shorebird Monitoring (PRISM) protocol used elsewhere in Alaska and incorporated a probability-based sampling design and dependent double-observer methods. We pooled all lowland shorebird and all upland shorebird observations and estimated abundance using Huggins closed captures models in Program MARK. Estimated abundances of all lowland and upland shorebirds were 42,239 ± 13,431 (SE) and 3,523 ± 494, respectively. The survey area is important for shorebirds in Alaska. We estimate that military lands in interior Alaska support 45,762 ± 13,925 shorebirds, including 7 species of conservation concern. Higher abundance of lowland shorebirds was best explained by lower elevation, lower percent scrub canopy, and higher percent water on plots. Higher abundance of upland shorebirds was best explained by higher elevation and increased distance to wetland. Our modified Arctic PRISM protocol was effective for surveys in the boreal forest and we recommend continued use of method modifications for future shorebird surveys in boreal forests. Identifying baseline abundances of shorebirds using interior Alaska is an important step in monitoring distributional shifts and potential future population declines. © 2020 The Authors. The Journal of Wildlife Management published by Wiley Periodicals LLC on behalf of The Wildlife Society.