Trajectory analysis of forest canopy effects on chemical flux in throughfall

Short interval sampling of precipitation inputs and stem flow-throughfall (SF-TF) outputs was conducted in a subalpine balsam fir forest to analyze the controls on canopy ion flux. A canopy hydrology model was used to separate the effects of abiotic and biotic processes. The time lag between precipitation inputs and SF-TF outputs caused by the storage of water in the canopy required that time-course patterns of SF-TF flux be examined graphically. The resulting trajectory analyses disclosed patterns from which we generalized about canopy processing of precipitation inputs. Changes in the ion concentration gradient across canopy tissue surfaces appeared to be an important factor in regulating the rate of flux of ions between canopy tissues and SF-TF. These changes were in turn determined by changes in such factors as apoplast ion concentrations and the residence time of water in the canopy. These generalizations permit qualitative predictions of SF-TF flux in other canopies over time based on only rudimentary knowledge of canopy structure and function.     

Inactivation and covalent modification of CTP synthetase by thiourea dioxide.

Thiourea dioxide was used in chemical modification studies to identify functionally important amino acids in Escherichia coli CTP synthetase. Incubation at pH 8.0 in the absence of substrates led to rapid, time dependent, and irreversible inactivation of the enzyme. The second-order rate constant for inactivation was 0.18 M-1 s-1. Inactivation also occurred in the absence of oxygen and in the presence of catalase, thereby ruling out mixed-function oxidation/reduction as the mode of amino acid modification. Saturating concentrations of the substrates ATP and UTP, and the allosteric activator GTP prevented inactivation by thiourea dioxide, whereas saturating concentrations of glutamine (a substrate) did not. The concentration dependence of nucleotide protection revealed cooperative behavior with respect to individual nucleotides and with respect to various combinations of nucleotides. Mixtures of nucleotides afforded greater protection against inactivation than single nucleotides alone, and a combination of the substrates ATP and UTP provided the most protection. The Hill coefficient for nucleotide protection was approximately 2 for ATP, UTP, and GTP. In the presence of 1:1 ratios of ATP:UTP, ATP:GTP, and UTP:GTP, the Hill coefficient was approximately 4 in each case. Fluorescence and circular dichroism measurements indicated that modification by thiourea dioxide causes detectable changes in the structure of the protein. Modification with [14C]thiourea dioxide demonstrated that complete inactivation correlates with incorporation of 3 mol of [14C]thiourea dioxide per mole of CTP synthetase monomer. The specificity of thiourea dioxide for lysine residues indicates that one or more lysines are most likely involved in CTP synthetase activity. The data further indicate that nucleotide binding prevents access to these functionally important residues.     

Active site studies on Bacillus amyloliquefaciens α-amylase (I)

Summary Modification of liquefying -amylase by diethylpyrocarbonate or its photo-oxidation in the presence of rose bengal caused rapid loss of enzyme activity. The photo-oxidation followed pseudo-first-order kinetics giving maximal value at pH 8.0. The photo-oxidized enzyme showed a characteristic increase in absorbance at 250 nm which was directly proportional to the extent of inactivation. Diethylpyrocarbonate at low concentration at pH 6.0 and 30 ° C completely inactivated a-amylase. Inactivation followed pseudo-first-order kinetics. The reaction order with respect to inactivation by diethylpyrocarbonate was one, thus indicating modification of a single histidine per mole of the enzyme. Diethylpyrocarbonate-modified enzyme showed increased absorbance at 240 nm which was reversed completely upon treatment with NH₂OH at 30 °C for 16 hr. Calculating the histidine residues being modified from the increase in absorbance at 240 nm showed that three residues were ethoxyformylated on treatment with diethylpyrocarbonate, of which only one was found at the active site. Substrate and competitive inhibitor protects the enzyme against both, photo-oxidation, and modification by diethylpyrocarbonate, confirming that histidine plays an essential role at the -amylase active site.     

Neuroprotective Potential and Chemical Profile of Alternatively Cultivated Ganoderma lucidum Basidiocarps

Various neurodegenerative diseases are the main challenges to the modern medicine and there is a great need for novel, natural, neuroprotective agents. Ganoderma lucidum is a well‐known medicinal mushroom, which health benefits have been confirmed by numerous studies. As demand for its basidiocarps is increased and traditional cultivation on hardwoods is not environmentally friendly and economically justified, finding of alternative substrates is necessary. The aim of the study was to assess the effect of alternative cultivation substrates on the chemical profile of G. lucidum basidiocarps and their capacity to inhibit acetylcholinesterase and tyrosinase, which higher activity is directly associated with neurodegenerative processes. Extracts of basidiocarps cultivated on alternative substrates, especially on clear wheat straw, showed significantly higher inhibition capacities than extracts of commercially‐grown ones. These extracts were considerably different chemically from commercial basidiocarps extracts and even nine new compounds were isolated from them. Our results suggest that cultivation substrate greatly affect the chemical profile and neuroprotective capacity of obtained basidiocarps and wheat straw is a promising cultivation substrate.     

Advances in the research of celery,an important Apiaceae vegetable crop

Celery (Apium graveolens L.), one of the most important vegetables in Apiaceae family, is cultivated worldwide and utilized in food and cosmetic industries because it is an excellent source of vitamins, phenolic compounds, volatile oils and other nutrients. Celery extracts possess various medicinal properties, such as antibacterial, anti-inflammatory and lowering blood glucose and serum lipid levels. With the rapid advancements in molecular biology and sequencing technology, studies on celery have been performed. Numerous molecular markers and regulatory genes have been discovered and applied to improve celery. Research advances, including genetic breeding, genomics research, function genes and chemical composition, regarding celery are reviewed in this paper. Further exploration and application trends are briefly described. This review provides a reference for basic and applied research on celery, an important Apiaceae vegetable crop.     

Theoretical investigation of thiophene-linked porphyrin-perylene photosensitiser for bulk-heterojunction solar cells

In this work, quantum chemical calculations were applied to investigate a new series of porphyrin-perylene conjugates for their potential use as light-harvesting compounds in bulk-heterojunction solar cells. Molecular design relies on the integration of a electron-donating porphyrin and a electron-accepting perylene units via a spacer containing 0 to 10 thiophene rings. Electronic properties of these push–pull systems were studied using density functional theory (DFT) and time-dependent DFT approaches. Results show that introduction of thiophene-based spacer with different number of the thiophene rings significantly affects the electronic and absorption properties of the molecules. According to its suitable energy gap, efficient charge transfer and appropriate absorption behaviour determined by the calculation, the derivative having a terthiophene linker should be as the optimal compound among all molecules studied herein.     

Molecular simulation of volume of mixing,Helmholtz free energy of mixing and entropy of mixing in bulk fluid mixtures

We describe a kinetic Monte Carlo molecular simulation procedure to calculate the Helmholtz free energy, the entropy and the chemical potentials of all components in a bulk fluid mixture. This allows us to derive the excess properties (volume, free energy and entropy) resulting from the mixing of homogeneous fluids of pure components at constant temperature and pressure. We have chosen neon–xenon mixtures to illustrate our method because of the large difference in collision diameter and well-depth of the interaction energy. When xenon is predominant in the mixture, the volume of mixing is larger. The excess entropy of mixing correlates with the volume of mixing, since a positive excess volume enables more configurations (more possible molecular distributions). The excess thermodynamic quantities as functions of the total density were found to be insensitive to temperature. To investigate the effects of the molecular parameters, we also studied argon–nitrogen and argon–krypton mixtures. The effect of the difference in molecular parameters is in the order: argon–nitrogen < argon–krypton < neon–xenon. A large difference in the well-depth of the interaction energies results in an increase in the excess thermodynamic variables, which is in agreement with the literature McDonald IR. NpT-ensemble Monte Carlo calculations for binary liquid mixtures. Mol Phys. 1972;23(1):41–58; Singer JVL, Singer K. Monte Carlo calculation of thermodynamic properties of binary mixtures of Lennard-Jones (12-6) liquids. Mol Phys. 1972;24(2):357–390.