崖柏与侧柏光合特性和叶绿素荧光参数的比较研究

以盆栽的中国特有濒危植物崖柏及其近缘广布种侧柏幼苗为材料,测定了二者的光照和二氧化碳响应特征参数、光合作用气体交换参数和叶绿素荧光参数,比较分析两者间差异并探讨崖柏异地保存的可行性。结果显示:(1)在光响应参数方面,崖柏和侧柏的表观量子效率分别为0.039和0.027 mol.mol-1,但二者差异不显著;崖柏的光补偿点(81.04μmol.m-2.s-1)显著高于侧柏(59.72μmol.m-2.s-1),但二者的最大净光合速率(Pmax)、光饱和点(LSP)和暗呼吸速率(Rd)均无显著差异;崖柏的CO2补偿点(129.17μmol.mol-1)显著高于侧柏(95.86μmol.mol-1),而光呼吸速率则崖柏略高于侧柏,但二者的羧化效率相当。(2)气体交换参数方面,崖柏的叶片气孔导度和蒸腾速率均低于侧柏,而瞬时水分利用效率和气孔限制值则略高于侧柏;随着光照强度增加,崖柏和侧柏的净光合速率和胞间CO2浓度增加,而气孔限制值则降低。(3)2个树种的叶绿素荧光参数,如初始荧光、最大荧光、可变荧光、光系统Ⅱ原初光能转换效率、光系统Ⅱ实际光化学量子效率、非光化学猝灭等均无显著差异,但崖柏光化学猝灭系数(0.218)显著低于侧柏(0.322)。研究表明,崖柏与侧柏在光合特性和叶绿素荧光参数方面具有较大的相似性,也表明崖柏在生长季对北迁环境具有较强的适应性。     

珙桐苗木叶片光合特性对土壤干旱胁迫的响应

通过控制土壤含水量,研究了土壤干旱胁迫对2年生珙桐(Davidia involucrata Baill.)幼苗叶面积、叶绿素含量、光合作用及叶绿素荧光参数的影响,以探讨珙桐光合作用对土壤干旱胁迫的响应机理.结果表明,干旱胁迫后,珙桐叶片失水脱落,各干旱胁迫处理叶面积比对照显著降低23%～98%,但单位面积的叶绿素含量却无显著变化;干旱处理的珙桐幼苗净光合速率(Pn)、气孔导度(Gs)、蒸腾速率(Tr)、水分利用效率(WUE)显著低于对照(P<0.05);干旱胁迫对珙桐幼苗叶片的初始荧光产量(F0)及最大荧光产量(Fm)没有产生显著影响,却显著降低了PSⅡ最大光化学量子产量(Fv/Fm)、PSⅡ实际光化学量子产量(Yield)、电子传递速率(ETR)及光化学淬灭系数(qP),使非光化学淬灭系数(qN)显著升高(P<0.05).研究发现,土壤水分亏缺对珙桐叶片的光合系统造成了不可逆的伤害,严重抑制了其正常的光合作用和生长发育;珙桐幼苗对土壤干旱胁迫极为敏感.     

利用模拟退火算法优化Biome-BGC模型参数

生态过程模型建立在明确的机理之上,能够较好地模拟陆地生态系统的行为和特征,但模型众多的参数,成为模型具体应用的瓶颈。本文以Biome-BGC模型为例,采用模拟退火算法,对其生理、生态参数进行优化。在优化过程中,先对待优化参数进行了选择,然后采取逐步优化的方法进行优化。结果表明,使用优化后的参数,模型模拟结果与实际观测更为接近,参数优化能有效地降低模型模拟的不确定性。文中参数优化的过程和方法,可为生态模型的参数识别和优化提供一种实例和思路,有助于生态模型应用区域的扩展。     

放射性药物动态模型建立与参数估计：PET定量分析（一）

正电子放射断层成像技术（Positron Emission Tomography,PET）是广泛应用的功能成像系统,也是分子影像技术之一。PET定量分析为疾病早期诊断、药物疗效评估、疾病发展进程观察提供高灵敏度高精确度的工具。本文介绍PET成像技术中放射性药物动态模型的建立与相关的参数估计分析。     

胡瓜钝绥螨对日光大棚茄子上烟粉虱的控制作用

为了评价胡瓜钝绥螨在我国日光大棚中对茄子上烟粉虱虱的控制作用。笔者研究了在24～34℃下胡瓜钝绥螨以烟粉为猎物时的发育历期,并在我国山东省寿光市的蔬菜基地上开展了利用胡瓜钝绥螨控制日光大棚茄子上烟粉虱的研究与应用。结果表明:胡瓜钝绥螨能够取食烟粉虱的卵、成虫、若虫及伪蛹;利用胡瓜钝绥螨能有效地控制烟粉虱成虫、卵、若虫种群数量的增长。根据胡瓜钝绥螨和烟粉虱的生物学特性,结合大棚茄子栽培过程中的环境条件,笔者提出了在日光大棚中应用胡瓜钝绥螨控制茄子上烟粉虱的策略:(1)在茄子的整个生长季节(250d)中需释放胡瓜钝绥螨4～6次,苗期每次每株释放5～10头,结果期每次每株释放20～40头;(2)释放胡瓜钝绥螨的生防区比常规化防区减少农药使用18次;(3)安装防虫网、适时释放胡瓜钝绥螨是生防成功之关键,生防区配合使用黄板效果更好。     

高仿真组织工程神经支架制备工艺的参数优化

目的:对直接影响神经支架微观结构的关键因素进行分析,以确定制备不同孔径仿真支架的制备工艺。方法:用前期开发的神经支架制备工艺,应用不同浓度的醋酸浓度和冷淋速度制备仿真神经支架,以扫描电镜观察神经支架结构特征,以确定醋酸浓度和冷淋速度对神经支架内部结构的影响。结果:醋酸浓度和冷淋速度对神经支架内部结构具有重要影响。醋酸浓度为0mg/ml时,无法制备定向结构的神经支架,当醋酸浓度为1mg/ml、2mg/ml、3mg/ml和4mg/ml时,可制备轴定向仿真支架,并且神经支架的孔径随醋酸浓度增大而增大;当冷淋速度为1×10-5m/s、2×10-5m/s和5×10-5m/s时,所制备的仿真支架内部均呈明显的轴向微管结构,其中冷淋速度为2×10-5m/s时,其轴向微管结构排列最为有序、规律。当速度为1×10-6m/s,2×10-6m/s,5×10-6m/s以及1×10-4m/s时,所制备的材料内部微管结构走向无明显规律。结论:醋酸浓度和冷淋速度是影响神经支架内部结构的两个关键因素,通过改变醋酸浓度和冷淋速度可制备不同孔径的仿真神经支架。     

optiFLP: software for automated optimization of amplified fragment length polymorphism scoring parameters

Amplified fragment length polymorphism (AFLP), a widely used method for DNA fingerprinting, has shifted from polyacrylamide gel to capillary electrophoresis over the last years. Currently, most AFLP data are generated in a computer-readable format, and several programs are available that automatically score raw data into binary profiles. Good scoring parameters are the key to good AFLP profiles. optiFLP is the first open source program for automatic optimization of AFLP scoring parameters. It searches parameter space to maximize the contrast among groups of AFLP profiles, with the allocation of profiles to groups in either a supervised or an unsupervised mode. The software produces output files ready for use in a range of downstream applications.     

Molecular dynamics simulations of unsaturated lipid bilayers: effects of varying the numbers of double bonds

The importance of unsaturated, and especially polyunsaturated phosphatidylcholine molecules for the functional properties of biological membranes is widely accepted. Here, the effects of unsaturation on the nanosecond-scale structural and dynamic properties of the phosphatidylcholine bilayer were elucidated by performance of multinanosecond molecular dynamics simulations of all-atom bilayer models. Bilayers of dipalmitoylphosphatidylcholine and its mono-, di-, and tetraunsaturated counterparts were simulated, containing, respectively, oleoyl, linoleoyl, or arachidonoyl chains in the sn-2 position. Analysis of the simulations focused on comparison of the structural properties, especially the ordering of the chains in the membranes. Although the results suggest some problems in the CHARMM force field of the lipids when applied in a constant pressure ensemble, the features appearing in the ordering of the unsaturated chains are consistent with the behaviour known from ²H NMR experiments. The rigidity of the double bonds is compensated by the flexibility of skew state single bonds juxtaposed with double bonds. The presence of double bonds in the sn-2 chains considerably reduces the order parameters of the CH bonds. Moreover, the double bond region of tetraunsaturated chains is shown to span all the way from the bilayer centre to the head group region.     

Addressing the intrinsic disorder bottleneck in structural proteomics

The Center for Eukaryotic Structural Genomics (CESG), as part of the Protein Structure Initiative (PSI), has established a high-throughput structure determination pipeline focused on eukaryotic proteins. NMR spectroscopy is an integral part of this pipeline, both as a method for structure determinations and as a means for screening proteins for stable structure. Because computational approaches have estimated that many eukaryotic proteins are highly disordered, about 1 year into the project, CESG began to use an algorithm (the Predictor of Naturally Disordered Regions, PONDR to avoid proteins that were likely to be disordered. We report a retrospective analysis of the effect of this filtering on the yield of viable structure determination candidates. In addition, we have used our current database of results on 70 protein targets from Arabidopsis thaliana and 1 from Caenorhabditis elegans, which were labeled uniformly with nitrogen-15 and screened for disorder by NMR spectroscopy, to compare the original algorithm with 13 other approaches for predicting disorder from sequence. Our study indicates that the efficiency of structural proteomics of eukaryotes can be improved significantly by removing targets predicted to be disordered by an algorithm chosen to provide optimal performance.