Diffusion theory in biology: a relic of mechanistic materialism

Diffusion theory explains in physical terms how materials move through a medium, e.g. water or a biological fluid. There are strong and widely acknowledged grounds for doubting the applicability of this theory in biology, although it continues to be accepted almost uncritically and taught as a basis of both biology and medicine. Our principal aim is to explore how this situation arose and has been allowed to continue seemingly unchallenged for more than 150 years. The main shortcomings of diffusion theory will be briefly reviewed to show that the entrenchment of this theory in the corpus of biological knowledge needs to be explained, especially as there are equally valid historical grounds for presuming that bulk fluid movement powered by the energy of cell metabolism plays a prominent note in the transport of molecules in the living body. First, the theory's evolution, notably from its origins in connection with the mechanistic materialist philosophy of mid nineteenth century physiology, is discussed. Following this, the entrenchment of the theory in twentieth century biology is analyzed in relation to three situations: the mechanism of oxygen transport between air and mammalian tissues; the structure and function of cell membranes; and the nature of the intermediary metabolism, with its implicit presumptions about the intracellular organization and the movement of molecules within it. In our final section, we consider several historically based alternatives to diffusion theory, all of which have their precursors in nineteenth and twentieth century philosophy of science. This revised version was published online in July 2006 with corrections to the Cover Date.     

在风景园林研究中定义“城市中的自然”

本文有关自然和城市关系的成果,可供学界和业界参考。其中的研究例如：城市热岛效应加剧带来的影响;当前城市水管理面临的挑战;以及与城市景观和福祉相关的健康问题研究;景观的无形社会价值等。研究表明,当下正值风景园林研究范式的转变时期,有关城市和自然的思考从对立转变为并置,知识体系也通过将实践和学术研究并行而得以构建。在这种范式转变过程中,“设计驱动型研究”（Research-through-Designing）应该扮演越来越重要的角色     

Dendrochronological dating and provenance determination of a 19th century whaler in Patagonia (Puerto Madryn,Argentina)

Dendrochronological methods have been widely used to determine the date of construction and provenance of shipwrecks. Despite a large number of shipwrecks, the application of dendroarchaeological techniques is relatively incipient in the coasts of South America. This paper presents the results of a dendroarchaeological study conducted at the shipwreck site "Bahía Galenses" (BG), located in the western sector of Golfo Nuevo, on the Patagonian coast of the South Atlantic Ocean. Based on previous archaeological research, two hypotheses were tested in this study. First, the wreck described in the BG 2 sub-site corresponds to a mid-19th-century whaler built in the northeastern US. Second, these remains correspond to the Dolphin, a northeastern American whaler built in Warren (Rhode Island) in 1850 and shipwrecked in the Atlantic coast of Patagonia in 1859. Using dendroarchaeological provenance methods and a novel approach based on the gridded North American Drought Atlas, we found highly significant correlations between the wreck's tree-ring width series and white oak and yellow pine tree-ring reference chronologies from the eastern US. The latest non-cutting dates obtained in this analysis correspond to the year 1849. To our knowledge, our study pioneered the use of dendrochronological methods for dating and establishing the provenance of a whaler's remains on the Atlantic coast of South America and encourages the feasibility for future dendroarchaeological research based on the large number of wooden shipwrecks that occurred in the region.     

From Anomaly to Unification: Tracy Sonneborn and the Species Problem in Protozoa, 1954--1957

This article examines the critique of the biological species concept advanced by protozoan geneticist Tracy Sonneborn at the 1955 AAAS symposium on “the species problem,” published subsequently in 1957. Although Sonneborn was a strong proponent of a population genetical conception of species, he became critical of the biological species concept for its failure to incorporate asexual and obligatory inbreeding organisms. It is argued that Sonneborn's intimate knowledge of the ciliate protozoan Paramecium aurelia species complex brought him into conflict with a growing pressure in the biological sciences to emphasize universal principles of life. Faced with the need to defend the value of P. aurelia as an investigative tool, Sonneborn argued that the sharp break in nature between sexual and asexual organisms posited by proponents of the biological species concept was not an existential feature of the living world, but rather the misleading consequence of an operational definition of species based only upon sexual organisms. Drawing upon his knowledge of the immense variability of P. aurelia, he proposed instead a continuum of breeding systems from obligatory outbreeding to asexual organisms, and a more broadly unifying definition of species that incorporated asexual as well as sexual organisms. Paradoxically, the push for unification that then characterized the evolutionary synthesis served to debar critical consideration of Sonneborn's more unificatory alternative, and his underlying contention that biological anomaly could serve as an important source of conceptual unification. This revised version was published online in July 2006 with corrections to the Cover Date.     

The potato in Spain during the late 16th century

A study is presented of the Hospital de la Sangre account books in Seville at the Archivo Hispalense for the period 1546 to 1601, to verify purchases of potatoes (Solanum tuberosum) during that period. Potatoes were bought regularly in the Seville market from 1580 onwards, with the first record appearing in 1573 thus agreeing with Salaman’s conclusion that potatoes became established in Spain by about 1570. Purchases were confined almost entirely to December and January each year, lending weight to the hypothesis that these were short day adaptedS. tuberosum ssp.andigena, actually grown in Spain and forming tubers in the short days at the end of the year. If potatoes had been imported for direct consumption from South America shipping records indicate that they could have arrived in Seville at all times of the year. A listing of other fruits and vegetables bought in the Seville market shows a wide range of mostly mediterranean crops with some of Near Eastern origin and certain spices imported through Lisbon from the Ear East. Surprisingly, very few New World crops are mentioned.     

Were medieval warm-season temperatures in Jämtland,central Scandinavian Mountains,lower than previously estimated?

Today few high-quality tree-ring based temperature reconstructions extending over the past millennium exist, and those have, in general, low replication in their early parts. Here we present a new and updated maximum latewood density (MXD) chronology extending over the last 1200 years, built from local Scots pine wood sources (living trees, drywood preserved the ground, and subfossil wood extracted from lakes) all collected within 20 km in the Scandinavian Mountains in Jämtland. The MXD data was used to reconstruct April-September mean temperatures, where 60% of the variance in observed temperatures could be explained. The reconstruction exhibited distinct multidecadal variability, with the coldest periods centred on ca. 900, 1450, 1600 and 1900 CE, and the warmest periods on ca. 1160, 1250, 1500, 1660 CE. The last part of the 20th – early part of 21st century was the warmest period throughout the whole record, and the reconstruction suggests that, on average, the Medieval Climate Anomaly (MCA, 950–1250 CE) was only slightly warmer than the Little Ice Age (LIA, 1450–1900 CE). In fact, compared to earlier reconstructions from the region, the new reconstruction suggested lower MCA warm-season temperatures. However, despite sufficient replication during that period, high inhomogeneity among the MXD series makes this period slightly uncertain. The unique drywood on which the chronology was built, displayed a distinct regeneration pattern, where changes in Scots pine establishment was interpreted as responses to changes in forest fire activity and climate throughout the past millennium.     

Amateurs and Professionals in One County: Biology and Natural History in Late Victorian Yorkshire

My goals in this paper are twofold: to outline there fashioning of amateur and professional roles in life science in late Victorian Yorkshire, and to provide a revised historiography of the relationship between amateurs and professionals in this era. Some historical treatments of this relationship assume that amateurs were demoralized by the advances of laboratory science, and so ceased to contribute and were left behind by the autonomous “new biology.” Despite this view, I show that many amateurs played a vital part in the construction of a professional academic community in urban Yorkshire, and then continued to collaborate with the laboratory-based biologists. The key to any analysis of the relationship between amateurs and professionals is the great variety of amateur identities and practices in Victorian Yorkshire. The amateur-professional riftfallacy arose because laboratory biologists fashioned an identity in conscious opposition to a particular type of amateur: an ideal that belied an array of co-operative relationships. As naturalists refashioned their roles and identities in light of the changes within academe and without, debates about the practice and place of life science took place as often among amateurs as between professionals and amateurs. This revised version was published online in July 2006 with corrections to the Cover Date.