Structure-based tailoring of compound libraries for high-throughput screening: discovery of novel EphB4 kinase inhibitors

High-throughput docking is a computational tool frequently used to discover small-molecule inhibitors of enzymes or receptors of known three-dimensional structure. Because of the large number of molecules in chemical libraries, automatic procedures to prune multimillion compound collections are useful for high-throughput docking and necessary for in vitro screening. Here, we propose an anchor-based library tailoring approach (termed ALTA) to focus a chemical library by docking and prioritizing molecular fragments according to their binding energy which includes continuum electrostatics solvation. In principle, ALTA does not require prior knowledge of known inhibitors, but receptor-based pharmacophore information (hydrogen bonds with the hinge region) is additionally used here to identify molecules with optimal anchor fragments for the ATP-binding site of the EphB4 receptor tyrosine kinase. The 21,418 molecules of the focused library (from an initial collection of about 730,000) are docked into EphB4 and ranked by force-field-based energy including electrostatic solvation. Among the 43 compounds tested in vitro, eight molecules originating from two different anchors show low-micromolar activity in a fluorescence-based enzymatic assay. Four of them are active in a cell-based assay and are potential anti-angiogenic compounds.     

大豆根瘤菌HH103菌株培养基的筛选与优化

以快生型大豆根瘤菌HH103菌株为供试菌株,采用单因素碳氮源利用试验和正交设计试验,确定最佳培养基及其配方。结果表明：该菌株在YMA中生长良好,最佳碳源为蔗糖,最佳氮源为酵母膏,最佳培养基成分配方（g/L）：蔗糖11,酵母膏0.9,K2HPO4 0.5,MnSO4 0.005,CaCl2 0.1,KH2PO4 0.5,MgSO4 0.2,KNO30.77,（NH4）2HPO4 0.33,FeCl3 0.005,pH 7.2。     

免疫A型呼吸道合胞病毒G75-225蛋白的小鼠对病毒感染的抗性

目的:评价A型呼吸道合胞病毒(RSV)G75-225蛋白(G151)与二硫键异构酶(DsbA)的重组蛋白抗原DsbA-G151的免疫活性。方法:采用PCR方法从A型RSVG蛋白扩增G151基因片段,插入表达载体pET-DsbA,经E.coli表达、亲和层析纯化制备DsbA-G151蛋白;将其免疫BALB/c小鼠后获得相应的抗血清,利用ELISA方法、保护性实验检测蛋白免疫活性。结果:构建了表达载体pET-DsbA-G151,表达、纯化获得了重组蛋白DsbA-G151。ELISA检测表明,DsbA-G151能在小鼠体内产生高滴度的特异性IgG;保护性实验显示该蛋白能有效保护BALB/c小鼠不被RSV感染。结论:经ELISA检测、保护性实验,表明DsbA-G151具有良好的免疫原性。     

蛋白质核心设计的序列组合文库筛选方法

本文提出一种新的蛋白质序列组合文库筛选方法,异型自系统最优法,用于从头设计蛋白质核心。经λ－阻遏蛋白、噬菌体４３４ＣＲＯ蛋白、白介素－４、硫氧还蛋白、泛肽等的检验,表明此方法用于从头设计蛋白质的核心是可行的。     

2株耐低温微生物处理污水模拟试验初报

从下水管道的污泥中分离筛选到耐冷细菌H6和耐冷酵母菌J1,采用此2菌株进行模拟污水低温(8℃)处理试验。H6和J1菌株对模拟污水COD的去除率分别为66.6%和72.2%;H6、J1菌株对有机氮去除率分别为76.9%和64.5%;H6、J1菌株对总磷去除率分别为53.9%和14.0%。说明低温微生物在低温环境的污水处理具有广阔的应用前景。     

以环氧乙烷为活性基的多孔颗粒状固定化青霉素酰化酶的制备

报道了用以环氧乙烷为活性基的多孔颗粒状载体（Eupergit-C）制备固定由巨大芽孢杆菌（B．megaterium）产生的青霉素酰化酶的研究。用已二胺,赖氨酸对载体进行化学修饰后制备固定化酶,获得了较好的固定结果。用未修饰的载体制备固化酶,经24h固定反应,酶活力达176．5IU／g（wet）,酶活力总叫率达53．7％,酶蛋白的固定量为19＝7mg/g（dr）,酶蛋白的固定效率达87．5％。游离酶的酶浓度对制备固定化酶的活力无显影响。当加酶量从312IU/g（dry）上升到6250IU／g（dry）时,固定化酶活力从89IU／g(wet）上升到475IU／g（wet）,总收率和固定化效率分别从99％和99％下降到26．5％和32．5％,酶蛋白的固定量从6．9mg/g（dry）上升到112mg/g（dry）,酶蛋白的固定效率从99％下降至80．5％。以酶活力为155IU/g(wet）,酶蛋白固定量为22mg/g(dry）的固定化酶水解青霉素G钾盐,经过20批循环水解后,剩余酶活力为92．5％。     

小鼠MPI基因的打靶载体的构建和筛选

目的　构建小鼠MPI基因的基因打靶载体转染ES细胞 ,构建用于同源重组筛选的对照载体。方法根据计算机分析小鼠MPI基因的基因组序列 ,构建用于同源重组载体的长臂和短臂并且转染小鼠ES细胞 ,经抗性筛选后得到阳性克隆 ,抽提基因组DNA后用PCR的方法进行重组子的初步筛选。结果　成功构建了MPI基因的基因打靶载体并且摸索了用PCR的方法进行重组细胞初步筛选的方法。结论　这个载体的构建为MPI基因功能的研究打下了基础 ,同时用PCR方法进行初步筛选大大减少了Southern杂交的工作量 ;利用实验小鼠来研究印迹基因是非常有效的方法 ,它不仅能了解印迹基因在小鼠生长发育过程中的功能 ,而且进而有助于研究人的相应印迹区。     

Decreased Expression of Transporters Reduces Folate Uptake across Renal Absorptive Surfaces in Experimental Alcoholism

In this study, we examined the mechanistic insights of folate reabsorption during alcoholism, considering enhanced renal excretion as one of the major contributing factors to alcohol-induced folate deficiency. Male Wistar rats were fed 1g/kg body weight/day ethanol (20% solution) orally for 3 months. The results on characterization of the folate transport system in renal basolateral membrane (BLM) suggested it to be a carrier-mediated, acidic pH-dependent and saturable one. Chronic ethanol feeding decreased the uptake mainly by increasing the K _m and decreasing the V _max of the transport process at the BLM surface. At the molecular level, reduced folate transport activity in renal tissue during chronic ethanol ingestion was attributable to decreased expression of reduced folate carrier (RFC) and folate binding protein (FBP). Antibodies against RFC protein revealed a parallel change in RFC expression in both brush border and BLM surfaces during chronic alcoholism. Such findings highlight the role of downregulation of RFC and FBP expression and provide mechanistic insight into the observed reduced folate transport efficiency at renal absorptive surfaces in alcoholism, which may result in low blood folate levels commonly observed in alcoholics.     

微生物资源库中产纤维素酶菌株的筛选及其酶学性质研究

利用平板碘液染色法对中国高校工业微生物资源与信息中心(CICIM-CU)资源库中保藏的625株细菌和放线菌进行筛选,从中筛出112株具有纤维素酶产生能力的菌株,建立了一个产纤维素酶微生物资源库.对筛选得到的纤维素酶产生菌株进行16S rDNA鉴定后发现,其中的Streptomyces tanashiensis、Paen...