Bivariate whole-genome linkage scan for bone geometry and total body fat mass

To quantify the genetic correlations between total body fat mass （TBFM） and femoral neck geometric parameters （FNGPs） and, if pos- sible, to detect the specific genomic regions shared by them, bivariate genetic analysis and bivariate whole-genome linkage scan were carried out in a large Caucasian population. All the phenotypes studied were significantly controlled by genetic factors （P 〈 0.001） with the heritabilities ranging from 0.45 to 0.68. Significantly genetic correlations were found between TBFM and CSA （cross-section area）, W （sub-periosteal diameter）, Z （section modulus） and CT （cortical thickness） except between TBFM and BR （buckling ratio）. The peak bivariate LOD scores were 3.23 （20q12）, 2.47 （20p11）, 3.19 （6q27）, 1.68 （20p12）, and 2.47 （7q11） for the five pairs of TBFM and BR, CSA, CT, W, and Z in the entire sample, respectively. Gender-specific bivariate linkage evidences were also found for the five pairs. 6p25 had complete pleiotropic effects on the variations of TBFM ＆ Z in the female sub-population, and 6q27 and 17q11 had coincident link- ages for TBFM ＆ CSA and TBFM ＆ Z in the entire population. We identified moderate genetic correlations and several shared genomic regions between TBFM and FNGPs in a large Caucasian population.     

Bone morphogenetic protein 4 (BMP4) signaling in retinoblastoma cells

Bone morphogenetic proteins (BMPs) - expressed in the developing retina - are known to be involved in the regulation of cell proliferation and apoptosis in several tumor entities. The objective of this study was to determine the role of the BMP4 pathway in retinoblastoma cells, which are absent in a functional retinoblastoma (RB1) gene. BMP receptors were detected in all retinoblastoma cell lines investigated. A correct transmission of BMP signaling via the Smad1/5/8 pathway could be demonstrated in WERI-Rb1 retinoblastoma cells and application of recombinant human BMP4 resulted in an increase in apoptosis, which to a large extend is caspase independent. Cell proliferation was not affected by BMP4 signaling, although the pRb-related proteins p107 and p130, contributing to the regulation of the same genes, are still expressed. WERI-Rb1 cells exhibit elevated endogenous levels of p21(CIP1) and p53, but we did not detect any increase in p53, p21(CIP1)or p27(KIP1) expression levels. Id proteins became, however, strongly up-regulated upon exogenous BMP4 treatment. Thus, RB1 loss in WERI-Rb1 cells is obviously not compensated for by pRb-independent (e.g. p53-dependent) cell cycle control mechanisms, preventing an anti-proliferative response to BMP4, which normally induces cell cycle arrest.     

Long‐term non‐equilibrium dynamics of insular floras: a 17‐year record

Aim To document long‐term rates of immigration, extinction and turnover in insular floras and evaluate the relative impacts of recent hurricane activity and climate change. Location Three archipelagos of small islands, in the Exuma Cays, Andros and Abacos, Bahamas. Methods I surveyed the floras of 194 vegetated islands in three archipelagos over several multi‐year periods, spanning up to 17 years. Changes in abundance (foliar cover) of persistent populations were measured on a subset of 14 islands in the Exuma Cays over a 9‐year period. Results Rates of plant turnover were generally low compared with other organisms, but varied among archipelagos and time periods. Turnover rates were usually higher in the second decade of this study, and extinction rates were often dramatically higher than immigration rates in the second decade, resulting in overall decreases in species richness. Turnover did not differ significantly among island types based on generalized location and surrounding water depths, and extinctions were not more likely to occur on more exposed islands. The abundance (foliar cover) of populations that did not go extinct decreased steadily over the second decade of this study, indicating, along with higher extinction rates, a generalized decline in these insular floras. Main conclusions Although some islands may have been at or near a state of dynamic equilibrium in the first decade of this study, average species richness declined in all three archipelagos during the second decade, when extinctions greatly outnumbered immigrations. Four major hurricanes affected the study archipelagos in the second decade of this study, although the available evidence suggests that the hurricanes were not directly responsible for the declines. Indirect effects of hurricanes such as increased herbivory and possible decreased nutrient availability, along with a long‐term (25 years) increase in temperature and decline in rainfall are likely contributing factors.     

Increased temperature and precipitation interact to affect root production,mortality, and turnover in a temperate steppe: implications for ecosystem C cycling

Fine root production and turnover play important roles in regulating carbon (C) cycling in terrestrial ecosystems. In order to examine effects of climate change on root production and turnover, a field experiment with increased temperature and precipitation had been conducted in a semiarid temperate steppe in northern China since April 2005. Experimental warming decreased annual root production, mortality, and mean standing crop by 10.3%, 12.1%, 7.0%, respectively, while root turnover was not affected in 2006 and 2007 by the warming. Annual root production and turnover was 5.9% and 10.3% greater in the elevated than ambient precipitation plots. Changes in root production and mortality in response to increased temperature and precipitation could be largely attributed to the changes in gross ecosystem productivity (GEP) and belowground/aboveground C allocation. There were significant interactive effects of warming and increased precipitation on root productivity, mortality, and standing crop. Experimental warming had positive and negative effects on the three root variables (root production, mortality, standing crop) under ambient and increased precipitation, respectively. Increased precipitation stimulated and suppressed the three root variables in the unwarmed and warmed subplots, respectively. The positive dependence of soil respiration and ecosystem respiration upon root productivity and mortality highlights the important role of root dynamics in ecosystem C cycling. The nonadditive effects of increased temperature and precipitation on root productivity, mortality, and standing crop observed in this study are critical for model projections of climate–ecosystem feedbacks. These findings indicate that carbon allocation is a focal point for future research and that results from single factor experiments should be treated with caution because of factor interactions.     

Structural and biochemical characterization of CRN-5 and Rrp46: An exosome component participating in apoptotic DNA degradation

Rrp46 was first identified as a protein component of the eukaryotic exosome, a protein complex involved in 3′ processing of RNA during RNA turnover and surveillance. The Rrp46 homolog, CRN-5, was subsequently characterized as a cell death-related nuclease, participating in DNA fragmentation during apoptosis in Caenorhabditis elegans. Here we report the crystal structures of CRN-5 and rice Rrp46 (oRrp46) at a resolution of 3.9 Å and 2.0 Å, respectively. We found that recombinant human Rrp46 (hRrp46), oRrp46, and CRN-5 are homodimers, and that endogenous hRrp46 and oRrp46 also form homodimers in a cellular environment, in addition to their association with a protein complex. Dimeric oRrp46 had both phosphorolytic RNase and hydrolytic DNase activities, whereas hRrp46 and CRN-5 bound to DNA without detectable nuclease activity. Site-directed mutagenesis in oRrp46 abolished either its DNase (E160Q) or RNase (K75E/Q76E) activities, confirming the critical importance of these residues in catalysis or substrate binding. Moreover, CRN-5 directly interacted with the apoptotic nuclease CRN-4 and enhanced the DNase activity of CRN-4, suggesting that CRN-5 cooperates with CRN-4 in apoptotic DNA degradation. Taken together all these results strongly suggest that Rrp46 forms a homodimer separately from exosome complexes and, depending on species, is either a structural or catalytic component of the machinery that cleaves DNA during apoptosis.     

Investigation of the age-at-onset heterogeneity in type 1 diabetes through mathematical modeling

The heterogeneity between young- and adult-onset type 1 diabetes (T1D) is well known, but not well understood. We approach this question through mathematical formulation and analysis of the dynamic interactions between the immune cells and the pancreatic islet beta-cells that lead to the beta-cell destruction. Utilizing the perturbation expansion method we investigate the dynamic stability of our system under fast and slow beta-cell turnover limits. We find that if autoimmunity is initiated when the turnover is slow (adult age), a stable steady state can exist with reduced number of beta-cells, where the beta-cell regeneration balances the ongoing autoimmune destruction. This implies that a slow disease process is possible. In contrast, if autoimmunity occurs when the beta-cell turnover is rapid (young age), such a stable state will never be attained and the destruction will progress unabated, leading to an acute disease onset. The major findings of our model are consistent with clinical observations, and it offers an explanation for the dynamic and phenotypic heterogeneity between young- and adult-onset T1D. More importantly, the model analyses point out that pathways regulating beta-cell turnover can be new targets to interfere with the disease process of T1D.     

Local signals in stem cell-based bone marrow regeneration

The cellular basis of bone marrow （BM） tissue development and regeneration is mediated through hematopoietic stem cells （HSCs） and mesenchymal stem cells （MSCs）. Local interplays between hematopoietic cells and BM stromal cells （BMSCs） determine the reconstitution of hematopoiesis after myelosuppression. Here we review the BM local signals in control of BM regeneration after insults. Hematopoietic growth factors （HGFs） and cytokines produced by BMSCs are primary factors in regulation ofBM hematopoiesis. Morphogens which are critical to early embryo development in multiple species have been added to the family of HSCs regulators, including families of Wnt proteins, Notch ligands, BMPs, and Hedgehogs. Global gene expression analysis of HSCs and BMSCs has begun to reveal signature groups of genes for both cell types. More importantly, analysis of global gene expression coupled with biochemical and biological studies of local signals during BM regeneration have strongly suggested that HGFs and cytokines may not be the primary local regulators for BM recovery, rather chemokines （SDF- 1, FGF-4） and angiogenic growth factors （VEGF-A, Ang- 1） play instructive roles in BM reconstitution after myelosuppression. A new direction of management of BM toxicity is emerging from the identification of BM regenerative regulators.     

血管生成素在造血系统恶性肿瘤中的作用及机制

促血管生成因子不仅参与实体肿瘤的发生和进展,而且与非实体瘤(如白血病等)的发生和发展进程密切相关.在众多促血管生成因子中,血管生成素(angiogenin, ANG)可以促进实体瘤细胞的生长和血管生成,然而其引起血管生成异常的详细机制目前还不完全清楚.本文就近年来在非实体瘤中血管生成素的功能及其潜在的治疗作用的研究进展进行综述.     

激活Shh信号通路促进BMP9诱导的小鼠成肌细胞C2C12向成骨分化

近年来骨组织工程技术迅猛发展,小鼠成肌细胞C2C12因其来源广泛等优点可望成为有效的种子细胞应用于组织工程. 然而,对于C2C12细胞的成骨分化机制仍需深入研究. 为了观察Sonic hedgehog（Shh）信号通路对骨形态发生蛋白9（bone morphogenetic proteins 9,BMP9）诱导的C2C12细胞成骨分化的影响,构建过表达腺病毒Ad Shh,并作用于BMP9处理的C2C12细胞,检测碱性磷酸酶（alkaline phosphatase , ALP）的变化,茜素红S染色检测钙盐沉积,RT PCR检测Shh、骨桥蛋白(osteopontin,OPN)、骨钙素（osteocalcin,OCN）、Runx2、Dlx5、Id1和Id2基因表达,Western印迹检测Shh、OPN、OCN、Runx2和Dlx5的蛋白质表达,Micro-CT和H&E染色检测裸鼠皮下异位成骨包块情况. 结果表明,活化Shh信号通路可促进BMP9诱导的C2C12细胞早晚期成骨分化,以及裸鼠皮下异位成骨.体内外实验证明,Shh信号通路能促进BMP9诱导小鼠成肌细胞C2C12向成骨分化.