Autophagy in response to environmental stresses: New monitoring perspectives

Autophagy, an evolutionarily conserved process of cellular homeostasis in all eukaryotes, has been heavily implicated in many aspects of human health and diseases. However, its pivotal roles, particularly in stress and adaptive responses in other species in the environment, have perhaps not received the attention they deserve. Autophagy processes may underlie important ecological phenomena such as coral bleaching, as well as various forms of responses and adaptations to environmental forcing and deterioration. Investigating and assessing autophagy responses in the contexts of environmental stresses and ecological changes would therefore be important. Such investigations in indicator organisms could provide valuable parameters for ecosystems health assessment. Understanding autophagy responses in ecologically important species could also be useful in efforts of species and biodiversity conservation.     

What drives phenotypic divergence among coral clonemates of Acropora palmata?

Evolutionary rescue of populations depends on their ability to produce phenotypic variation that is heritable and adaptive. DNA mutations are the best understood mechanisms to create phenotypic variation, but other, less well‐studied mechanisms exist. Marine benthic foundation species provide opportunities to study these mechanisms because many are dominated by isogenic stands produced through asexual reproduction. For example, Caribbean acroporid corals are long lived and reproduce asexually via breakage of branches. Fragmentation is often the dominant mode of local population maintenance. Thus, large genets with many ramets (colonies) are common. Here, we observed phenotypic variation in stress responses within genets following the coral bleaching events in 2014 and 2015 caused by high water temperatures. This was not due to genetic variation in their symbiotic dinoflagellates (Symbiodinium “fitti”) because each genet of this coral species typically harbours a single strain of S. “fitti”. Characterization of the microbiome via 16S tag sequencing correlated the abundance of only two microbiome members (Tepidiphilus, Endozoicomonas) with a bleaching response. Epigenetic changes were significantly correlated with the host's genetic background, the location of the sampled polyps within the colonies (e.g., branch vs. base of colony), and differences in the colonies’ condition during the bleaching event. We conclude that long‐term microenvironmental differences led to changes in the way the ramets methylated their genomes, contributing to the differential bleaching response. However, most of the variation in differential bleaching response among clonemates of Acropora palmata remains unexplained. This research provides novel data and hypotheses to help understand intragenet variability in stress phenotypes of sessile marine species.     

Uncovering the volatile nature of tropical coastal marine ecosystems in a changing world

Biogenic volatile organic compounds (BVOCs), in particular dimethyl sulphide (DMS) and isoprene, have fundamental ecological, physiological and climatic roles. Our current understanding of these roles is almost exclusively established from terrestrial or oceanic environments but signifies a potentially major, but largely unknown, role for BVOCs in tropical coastal marine ecosystems. The tropical coast is a transition zone between the land and ocean, characterized by highly productive and biodiverse coral reefs, seagrass beds and mangroves, which house primary producers that are amongst the greatest emitters of BVOCs on the planet. Here, we synthesize our existing understanding of BVOC emissions to produce a novel conceptual framework of the tropical marine coast as a continuum from DMS‐dominated reef producers to isoprene‐dominated mangroves. We use existing and previously unpublished data to consider how current environmental conditions shape BVOC production across the tropical coastal continuum, and in turn how BVOCs can regulate environmental stress tolerance or species interactions via infochemical networks. We use this as a framework to discuss how existing predictions of future tropical coastal BVOC emissions, and the roles they play, are effectively restricted to present day ‘baseline’ trends of BVOC production across species and environmental conditions; as such, there remains a critical need to focus research efforts on BVOC responses to rapidly accelerating anthropogenic impacts at local and regional scales. We highlight the complete lack of current knowledge required to understand the future ecological functioning of these important systems, and to predict whether feedback mechanisms are likely to regulate or exacerbate current climate change scenarios through environmentally and ecologically mediated changes to BVOC budgets at the ecosystem level.     

Coral–algal phase shifts alter fish communities and reduce fisheries production

Anthropogenic stress has been shown to reduce coral coverage in ecosystems all over the world. A phase shift towards an algae‐dominated system may accompany coral loss. In this case, the composition of the reef‐associated fish assemblage will change and human communities relying on reef fisheries for income and food security may be negatively impacted. We present a case study based on the Raja Ampat Archipelago in Eastern Indonesia. Using a dynamic food web model, we simulate the loss of coral reefs with accompanied transition towards an algae‐dominated state and quantify the likely change in fish populations and fisheries productivity. One set of simulations represents extreme scenarios, including 100% loss of coral. In this experiment, ecosystem changes are driven by coral loss itself and a degree of habitat dependency by reef fish is assumed. An alternative simulation is presented without assumed habitat dependency, where changes to the ecosystem are driven by historical observations of reef fish communities when coral is lost. The coral–algal phase shift results in reduced biodiversity and ecosystem maturity. Relative increases in the biomass of small‐bodied fish species mean higher productivity on reefs overall, but much reduced landings of traditionally targeted species.     

The impact of ENSO on coral heat stress in the western equatorial Pacific

The Coral Triangle encompasses an extensive region of coral reefs in the western tropical Pacific with marine resources that support millions of people. As in all other reef regions, coral reefs in the Coral Triangle have been impacted by anomalously high ocean temperature. The vast majority of bleaching observations to date have been associated with the 1998 La Niña phase of ENSO. To understand the significance of ENSO and other climatic oscillations to heat stress in the Coral Triangle, we use a 5‐km resolution Regional Ocean Model System for the Coral Triangle (CT‐ROMS) to study ocean temperature thresholds and variability for the 1960–2007 historical period. Heat‐stress events are more frequent during La Niña events, but occur under all climatic conditions, reflecting an overall warming trend since the 1970s. Mean sea surface temperature (SST) in the region increased an average of ~ 0.1 °C per decade over the time period, but with considerable spatial variability. The spatial patterns of SST and heat stress across the Coral Triangle reflect the complex bathymetry and oceanography. The patterns did not change significantly over time or with shifts in ENSO. Several regions experienced little to no heat stress over the entire period. Of particular interest to marine conservation are regions where there are few records of coral bleaching despite the presence of significant heat stress, such as in the Banda Sea. Although this may be due to under‐reporting of bleaching events, it may also be due to physical factors such as mixing and cloudiness, or biological factors that reduce sensitivity to heat stress.     

Estimation of the nutrient consumption by various cell sizes of the diatom Eucampia zodiacus: A representative organism causing bleaching of aquacultured nori

The diatom Eucampia zodiacus is a harmful species that indirectly causes bleaching to nori (Pyropia) cultivation through competitive utilization of nutrients during its bloom, however cellular storage and changes in physiology by asexual reproduction remains unclear. In the present study, we experimentally investigated the nitrate (N), phosphate (P) and silicic acid (Si) consumption by various cell sizes of E. zodiacus strains, the apical axis length of which ranged from 10.2 to 77.3 μm. Nutrient cell quotas of E. zodiacus ranged from 2.7 to 8.4 pM cell⁻¹ for N, 0.34–0.76 pM cell⁻¹ for P and 1.7–7.3 pM cell⁻¹ for Si, and they increased with cell size, in which there is a significant correlation between these two elements. The N and P quotas were estimated to be several times higher than the minimum cell quotas. In contrast, the Si cell quotas were approximately equal to those of the minimum values. Based on the present cell quotas, total nitrate consumption by E. zodiacus population when the blooms reached maximum cell density (=1000 cells ml⁻¹) were estimated to be 6.5 μM. Monthly mean concentrations of dissolved inorganic nitrogen (DIN) range from 3.5 to 8.2 μM during the period of late nori harvest season when E. zodiacus blooms occur, and nori bleaching is reported at the condition of DIN concentration of less than 3 μM in Harima-Nada, eastern Seto Inland Sea, Japan. Therefore, the present results suggest that E. zodiacus causes serious damage to nori cultivation due to high levels of nutrient consumption.     

Population dynamics of zooxanthellae during a bacterial bleaching event

Each summer 80–90% of the colonies of Oculina patagonica undergo bleaching off the Mediterranean coast of Israel. To investigate fluctuations through a yearly bleaching cycle, monthly measurements of zooxanthella density, mitotic index and chlorophyll-a concentration were conducted. Results showed (1) a significant negative correlation between sea surface temperature (SST) and zooxanthella density; (2) both significantly lower zooxanthella mitotic index and higher chlorophyll-a per zooxanthella content during the bleaching season compared with the non-bleaching period; (3) prior to bleaching, a lag between the peak of zooxanthella density and chlorophyll-a concentration followed by a similar lag during recovery. Zooxanthella density declined significantly between March and May while chlorophyll-a concentration peaked in April, and then declined. Zooxanthella density increased significantly in November while chlorophyll-a concentration increased significantly in January. We conclude that during bacterial bleaching events, zooxanthellae are severely damaged. However, by the time of the following bleaching event the coral tissues regain their “normal” (pre-bleaching) zooxanthella population density.     

Symbiotic crabs maintain coral health by clearing sediments

Stony corals are the foundation of coral reef ecosystems and form associations with other reef species. Many of these associations may be ecologically important and play a role in maintaining the health and diversity of reef systems, rendering it critical to understand the influence of symbiotic organisms in mediating responses to perturbation. This study demonstrates the importance of an association with trapeziid crabs in reducing adverse effects of sediments deposited on corals. In a field experiment, mortality rates of two species of branching corals were significantly lowered by the presence of crabs. All outplanted corals with crabs survived whereas 45–80% of corals without crabs died within a month. For surviving corals that lacked crabs, growth was slower and tissue bleaching and sediment load were higher. Laboratory experiments revealed that corals with crabs shed substantially more of the sediments deposited on coral surfaces, but also that crabs were most effective at removing grain sizes that were most damaging to coral tissues. The mechanism underlying this symbiotic relationship has not been recognized previously, and its role in maintaining coral health is likely to become even more critical as reefs worldwide experience increasing sedimentation.