Microbial control of soil organic matter mineralization responses to labile carbon in subarctic climate change treatments

Half the global soil carbon (C) is held in high‐latitude systems. Climate change will expose these to warming and a shift towards plant communities with more labile C input. Labile C can also increase the rate of loss of native soil organic matter (SOM); a phenomenon termed ‘priming’. We investigated how warming (+1.1 °C over ambient using open top chambers) and litter addition (90 g m^?2 yr^?1) treatments in the subarctic influenced the susceptibility of SOM mineralization to priming, and its microbial underpinnings. Labile C appeared to inhibit the mineralization of C from SOM by up to 60% within hours. In contrast, the mineralization of N from SOM was stimulated by up to 300%. These responses occurred rapidly and were unrelated to microbial successional dynamics, suggesting catabolic responses. Considered separately, the labile C inhibited C mineralization is compatible with previously reported findings termed ‘preferential substrate utilization’ or ‘negative apparent priming’, while the stimulated N mineralization responses echo recent reports of ‘real priming’ of SOM mineralization. However, C and N mineralization responses derived from the same SOM source must be interpreted together: This suggested that the microbial SOM‐use decreased in magnitude and shifted to components richer in N. This finding highlights that only considering SOM in terms of C may be simplistic, and will not capture all changes in SOM decomposition. The selective mining for N increased in climate change treatments with higher fungal dominance. In conclusion, labile C appeared to trigger catabolic responses of the resident microbial community that shifted the SOM mining to N‐rich components; an effect that increased with higher fungal dominance. Extrapolating from these findings, the predicted shrub expansion in the subarctic could result in an altered microbial use of SOM, selectively mining it for N‐rich components, and leading to a reduced total SOM‐use.     

Facultative nitrogen fixation by legumes in the central Congo basin is downregulated during late successional stages

The contribution of the legume community to the nitrogen cycle during natural forest regeneration remains poorly understood. We systematically assessed the changes in abundance and nodulation status of all legumes, across taxa and plant types, in a forest succession gradient in the Equateur Province of the Democratic Republic of the Congo. Our results clearly show that symbiotic N₂ fixation is downregulated during late successional stages.     

Biogeochemical study of organic substances in Antarctic lakes

The features of organic constituents in Antarctic lakes and ponds of the McMurdo, Syowa and Vestfold oases are summarised from a biogeochemical viewpoint. Total organic carbon or dissolved organic carbon contents in saline lakewaters are generally extremely high and much higher than those in freshwater lakes. The concentrations and/or compositions of hydrocarbons, fatty acids, sterols, phenolic acids and hydroxy acids in lake and pond waters and sediments vary markedly, probably reflecting differences in biological activity and source organisms. Long-chain alkenes, such as n-C_29:2 (carbon chain length: numbers of unsaturated bonds) are found as the major hydrocarbons in some anoxic lake sediments. Unusually, long-chain n-alkanoic acids are abundant in some Antarctic lake sediments and 24-ethylcholest-5-en-3-ol is the most prominent sterol in most of the lakes studied. It is suggested that some bacteria, and cyanobacteria and algae are important sources of long-chain n-alkanoic acids and 24-ethylcholest-5-en-3-ol, respectively, as previously reported from environments of the mid and lower latitudes. The dominance of p-hydroxybenzoic acid among the phenolic acids found together with the absence of syringic, p-coumaric and ferulic acids in the Antarctic lakes reflects the absence of vascular plants in the areas studied.In three Antarctic saline lakes (Vanda, Fryxell and Ace) the kinds and amounts of organic constituents differ with depth due to the zonation of microorganisms. The maximum fatty acid contents are found at depths just above the anoxic layer, corresponding to the photosynthetic maxima in the lakes, and the depths of maximum phytoplankton populations. In the bottom sediments of the lakes, the composition of organic substances is significantly different from that in the water columns, indicating that the sinking organic substances are degraded rapidly by microorganisms on the lake bottom.     

Acid rain and its effects on sediments in lakes and streams

Wet and dry deposition of acidic substances, which are emitted to the atmosphere by human activities, have been falling on increasingly widespread areas throughout the world in recent decades. As a result, annual precipitation averages less than pH 4.5 over large areas of the Northern Temperate Zone, and not infrequently, individual rainstorms and cloud or fog-water events have pH values less than 3. Concurrently, thousands of lakes and streams in North America and Europe have become so acidified that they no longer support viable populations of fish and other organisms.Acid deposition may affect sediments in lakes and streams in a variety of ways. In particular, the sediment-water exchange of metals, sulfur, nitrogen and phosphorus, microbial processes, growth of periphyton and macrophytes, and benthic invertebrates may be affected.Overall, the effects of acid deposition on lake and stream ecosystems are the result of numerous and complex biogeochemical interactions, including catchment characteristics, flow path and residence time of water, and lake-basin morphometry and acid neutralization capacity of both aquatic and terrestrial (catchment) ecosystems.Suggestions for future research are given.     

Six New Families of Aerobic Arsenate Reducing Bacteria: Leclercia,Raoultella, Kosakonia,Lelliottia, Yokenella,and Kluyvera

Elevated levels of arsenate can occur in the environment due to processes such as mining activities, and microbes must utilize various detoxification mechanisms to adapt to the associated pressure. The aim of this study was to identify as many aerobic arsenate-reducing bacteria (aARB) as possible in order to investigate their phylogenetic diversity and molecular mechanisms of arsenic resistance. We isolated 24 strains of aARB from a long-standing arsenic contaminated environment and detected the ars genotype in them. All 24 strains could reduce approximately 90% of arsenate, and 23 of them exhibited (6–59%) arsenic removal ability. The 16S rRNA gene analyses revealed aARB representing 16 genera were abundant. The included six genera, namely Leclercia, Raoultella, Kosakonia, Lelliottia, Yokenella, and Kluyvera, that were not previously known to reduce or exhibit resistance to arsenic. Twenty-one of 24 aARB were positive for ars amplification and 17 of them harbored a putative arsC gene, which is well-known for its involvement in arsenate reduction. However, the arsenic resistance associated with aARB strains is not always determined by the ars operon system. These results have provided additional insight into aARB and their potential for arsenic transformation and bioremediation.     

Microbial models with data‐driven parameters predict stronger soil carbon responses to climate change

Long‐term carbon (C) cycle feedbacks to climate depend on the future dynamics of soil organic carbon (SOC). Current models show low predictive accuracy at simulating contemporary SOC pools, which can be improved through parameter estimation. However, major uncertainty remains in global soil responses to climate change, particularly uncertainty in how the activity of soil microbial communities will respond. To date, the role of microbes in SOC dynamics has been implicitly described by decay rate constants in most conventional global carbon cycle models. Explicitly including microbial biomass dynamics into C cycle model formulations has shown potential to improve model predictive performance when assessed against global SOC databases. This study aimed to data‐constrained parameters of two soil microbial models, evaluate the improvements in performance of those calibrated models in predicting contemporary carbon stocks, and compare the SOC responses to climate change and their uncertainties between microbial and conventional models. Microbial models with calibrated parameters explained 51% of variability in the observed total SOC, whereas a calibrated conventional model explained 41%. The microbial models, when forced with climate and soil carbon input predictions from the 5th Coupled Model Intercomparison Project (CMIP5), produced stronger soil C responses to 95 years of climate change than any of the 11 CMIP5 models. The calibrated microbial models predicted between 8% (2‐pool model) and 11% (4‐pool model) soil C losses compared with CMIP5 model projections which ranged from a 7% loss to a 22.6% gain. Lastly, we observed unrealistic oscillatory SOC dynamics in the 2‐pool microbial model. The 4‐pool model also produced oscillations, but they were less prominent and could be avoided, depending on the parameter values.     

Hydrologic regulation of gross methyl chloride and methyl bromide uptake from Alaskan Arctic tundra

The Arctic tundra has been shown to be a potentially significant regional sink for methyl chloride (CH₃Cl) and methyl bromide (CH₃Br), although prior field studies were spatially and temporally limited, and did not include gross flux measurements. Here we compare net and gross CH₃Cl and CH₃Br fluxes in the northern coastal plain and continental interior. As expected, both regions were net sinks for CH₃Cl and CH₃Br. Gross uptake rates (−793 nmol CH₃Cl m⁻² day⁻¹ and −20.3 nmol CH₃Br m⁻² day⁻¹) were 20–240% greater than net fluxes, suggesting that the Arctic is an even greater sink than previously believed. Hydrology was the principal regulator of methyl halide flux, with an overall trend towards increasing methyl halide uptake with decreasing soil moisture. Water table depth was one of the best predictors of net and gross uptake, with uptake increasing proportionately with water table depth. In drier areas, gross uptake was very high, averaging −1201 nmol CH₃Cl m⁻² day⁻¹ and −34.9 nmol CH₃Br m⁻² day⁻¹; in flooded areas, gross uptake was significantly lower, averaging −61 nmol CH₃Cl m⁻² day⁻¹ and −2.3 nmol CH₃Br m⁻² day⁻¹. Net and gross uptake was greater in the continental interior than in the northern coastal plain, presumably due to drier inland conditions. Within certain microtopographic features (low‐ and high‐centered polygons), uptake rates were positively correlated with soil temperature, indicating that temperature played a secondary role in methyl halide uptake. Incubations suggested that the inverse relationship between water content and methyl halide uptake was the result of mass transfer limitation in saturated soils, rather than because of reduced microbial activity under anaerobic conditions. These findings have potential regional significance, as the Arctic is expected to become warmer and drier due to anthropogenic climate forcing, potentially enhancing the Arctic sink for CH₃Cl and CH₃Br.     

Landscape Distribution of Microbial Activity in the McMurdo Dry Valleys: Linked Biotic Processes, Hydrology, and Geochemistry in a Cold Desert Ecosystem

In desert ecosystems, microbial activity and associated nutrient cycles are driven primarily by water availability and secondarily by nutrient availability. This is especially apparent in the extremely low productivity cold deserts of the McMurdo Dry Valleys, Antarctica. In this region, sediments near streams and lakes provide the seasonally wet conditions necessary for microbial activity and nutrient cycling and thus transfer energy to higher organisms. However, aside from a few studies of soil respiration, rates of microbial activity throughout the region remain unexplored. We measured extracellular enzyme activity potentials (alkaline phosphatase, leucine-aminopeptidase, beta-glucosidase, phenol oxidase, and peroxidase) in soils adjacent to lakes and streams, expecting activity to be primarily related to soil water content, as well as time of season and organic matter supply. Phosphatase and beta-glucosidase activities were higher in shoreline than upland soils; however, potential rates were not correlated with soil water content. Instead, soil organic matter, salinity, and pH were the best predictors of microbial activity. Microbial nutrient limitation metrics estimated from extracellular enzyme activity were correlated with pH and salinity and exhibited similar patterns to previously published trends in soil P and N content. Compared to other terrestrial ecosystems, organic matter specific rates for leucine-aminopeptidase and oxidative enzyme activities were high, typical of alkaline desert soils. Phosphatase activity was close to the global mean whereas beta-glucosidase activity was extremely low, which may reflect the lack of vascular plant derived organic matter in the Dry Valleys. In this cold desert ecosystem, water availability promotes microbial activity, and microbial nutrient cycling potentials are related to soil geochemistry. Author contributions:   LHZ performed research, analyzed data, and wrote the paper; RLS contributed new methods and wrote the paper; JEB conceived/designed study, performed research and analyzed data; MNG conceived/designed study and performed research; CTV conceived/designed study and performed research.     

生态化学计量学研究进展

生态化学计量学结合生物学、化学和物理学等基本原理,研究能量和碳、氮、磷等化学元素在生态系统中,特别是各种生态系统过程(如竞争、捕食、寄生、共生等)参与者中的变化,以及它们之间的动态平衡,并分析这种平衡对生态系统的影响。目前,C∶N∶P化学计量学研究已深入到生态学的各个层次(细胞、个体、种群、群落、生态系统)及区域等不同尺度。近年来,由于认识到化学计量学研究可以把生态实体的各个层次在元素水平上统一起来,因此生态化学计量学已成为许多生态系统的新兴研究工具。其中,C∶N∶P化学计量学是各种生态过程研究中的核心内容。论述了生态化学计量学在物种、群落、生态系统等各层次的应用现状,并指出了C∶N∶P化学计量学研究的应用前景和发展趋势,以期引起同行的重视并推动该领域的进一步发展。     

Biogeochemical transformations of arsenic in circumneutral freshwater sediments

Arsenic is a wide-spread contaminant of soils and sediments, andmany watersheds worldwide regularly experience severe arsenic loading. While the toxicityof arsenic to plants and animals is well recognized, the geochemical and biological transformationsthat alter its bioavailability in the environment are multifaceted and remain poorly understood.This communication provides a brief overview of our current understanding of the biogeochemistryof arsenic in circumneutral freshwater sediments, placing special emphasis on microbialtransformations. Arsenic can reside in a number of oxidation states and complex ions. The commoninorganic aqueous species at circumneutral pH are the negatively charged arsenates(H₂As^VO₄ ^- and Has^VO₄ ^2-) and zero-charged arsenite(H₃As^IIIO₃ ⁰). Arsenic undergoes diagenesis in response to both physicaland biogeochemical processes. It accumulates in oxic sediments by adsorption on and/orco-precipitation with hydrous iron and manganese oxides. Burial of such sediments in anoxic/suboxicenvironments favors their reduction, releasing Fe(II), Mn(II) and associatedadsorbed/coprecipitated As. Upward advection can translocate these cations and As into theoverlying oxic zone where they may reprecipitate. Alternatively, As may be repartitioned tothe sulfidic phase, forming precipitates such as arsenopyrite and orpiment. Soluble and adsorbedAs species undergo biotic transformations. As(V) can serve as the terminal electronacceptor in the biological oxidation of organic matter, and the limited number of microbes capableof this transformations are diverse in their phylogeny and physiology. Fe(III)-respiring bacteriacan mobilize both As(V) and As(III) bound to ferric oxides by the reductive dissolution ofiron-arsenate minerals. SO₄ ^2--reducing bacteria canpromote deposition of As(III) as sulfide minerals via their production of sulfide. A limited number of As(III)-oxidizing bacteriahave been identified, some of which couple this reaction to growth. Lastly, prokaryotic andeukaryotic microbes can alter arsenic toxicity either by coupling cellular export to its reductionor by converting inorganic As to organo-arsenical compounds. The degree to which each ofthese metabolic transformations influences As mobilization or sequestration in differentsedimentary matrices remains to be established.