Kinetic Modeling of Amino Acid Oxidation Catalyzed by a New D‐Amino Acid Oxidase from Arthrobacter protophormiae

Amino acid oxidases, which enantiospecifically catalyze the oxidative deamination of either D‐ or L‐amino acids, belong to the class of oxidoreductases functioning with a tightly bound cofactor. This cofactor favors industrial applications of D‐amino acid oxidases (D‐AAO). Hence, the enzyme is very important for the industrial application in the purification and determination of certain amino acids. In developing the enzyme‐catalyzed reaction for large‐scale production, modeling of the reaction kinetics plays an important role. Therefore, the subject of this study was the kinetics of the oxidative deamination, a very complex reaction system, which is catalyzed by D‐AAO from Arthrobacter protophormiae using its natural substrate D‐methionine and the aromatic amino acid 3,4‐dihydroxyphenyl‐D‐alanine (D‐DOPA). The kinetic parameters determined by the measurement of the initial rate and nonlinear regression were verified in batch reactor experiments by comparing calculated and experimental concentration‐time curves. It was found that the enzyme is highly specific towards D‐methionine (K_m = 0.24 mM) and not as specific to D‐DOPA as a substrate (K_m = 9.33 mM). The enzyme activity towards D‐methionine ( = 3.01 U/mL) was approx. seven times higher than towards D‐DOPA ( = 20.01 U/mL). The enzyme exhibited no activity towards L‐methionine and L‐DOPA. Batch and repetitive batch experiments were performed with both substrates in the presence and in the absence of catalase for hydrogen peroxide decomposition. Their comparison made it possible to conclude that hydrogen peroxide has no negative influence on the enzyme activity.     

Global Warming: A Consequence of Human Activities Rivaling Earth's Biogeochemical Processes

The planet is growing warmer because of a massive disruption in global biogeochemical cycles. We are burning our reserves of fossil fuels, which formed over a period of 300 million years, in the blink of an eye in geologic time. One manifestation of our addiction to fossil fuels is a dramatic change in the composition of the atmosphere and its radiative properties. Evidence is discussed in this commentary that human-induced global warming has already occurred, that powerful inertia is in place to cause future warming, and that humans and ecosystems are currently being affected. Stabilizing the atmospheric concentration of carbon dioxide at 550 ppm within the next century will require a 70% cutback in emissions. Thus, a whole new system of powering our global economy is necessary.     

Optimization of Operating Temperature for Continuous Immobilized Glucose Isomerase Reactor with Pseudo Linear Kinetics

In this work, the optimal operating temperature for the enzymatic isomerization of glucose to fructose using a continuous immobilized glucose isomerase packed bed reactor is studied. This optimization problem describing the performance of such reactor is based on reversible pseudo linear kinetics and is expressed in terms of a recycle ratio. The thermal deactivation of the enzyme as well as the substrate protection during the reactor operation is considered. The formulation of the problem is expressed in terms of maximization of the productivity of fructose. This constrained nonlinear optimization problem is solved using the disjoint policy of the calculus of variations. Accordingly, this method of solution transforms the nonlinear optimization problem into a system of two coupled nonlinear ordinary differential equations (ODEs) of the initial value type, one equation for the operating temperature profile and the other one for the enzyme activity. The ODE for the operating temperature profile is dependent on the recycle ratio, operating time period, and the reactor residence time as well as the kinetics of the reaction and enzyme deactivation. The optimal initial operating temperature is selected by solving the ODEs system by maximizing the fructose productivity. This results into an unconstrained one‐dimensional optimization problem with simple bounds on the operating temperature. Depending on the limits of the recycle ratio, which represents either a plug flow or a mixed flow reactor, it is found that the optimal temperature of operation is characterized by an increasing temperature profile. For higher residence time and low operating periods the residual enzyme activity in the mixed flow reactor is higher than that for the plug flow reactor, which in turn allows the mixed flow reactor to operate at lower temperature than that of the plug flow reactor. At long operating times and short residence time, the operating temperature profiles are almost the same for both reactors. This could be attributed to the effect of substrate protection on the enzyme stability, which is almost the same for both reactors. Improvement in the fructose productivity for both types of reactors is achieved when compared to the constant optimum temperature of operation. The improvement in the fructose productivity for the plug flow reactor is significant in comparison with the mixed flow reactor.     

黄土高原人工油松林林冠截留动态过程研究

林冠截留量的大小直接影响着大气降水产生地表径流量的多少 ,也决定着森林涵蓄降水能力的大小 ,是评价森林保持水土效益的关键指标之一。因此 ,一直是森林水文和水土保持研究的重点 ,特别是林冠截留的动态过程的研究 ,对揭示径流、泥沙过程有积极的意义。由于影响林冠截留过程因素复杂 ,目前国内外在林冠截留动态方面的研究较少[1～ 3] ,缺乏好的模型描述此过程[4～ 7] ,限制了森林保持水土机理研究的进展。研究林冠截留的动态过程不仅能够阐明森林保持水土的机理 ,而且对研究林地土壤侵蚀过程有重要意义。1　研究地区与方法1 1　自然概况试…     

Entrapment of pollutants in Mediterranean sediments and biogeochemical indicators of their impact

The transit and fate of certain pollutants (Cd, Pb, Zn and P) transported to the western Mediterranean sea-floor and a method to assess their impact are described. The spatial distribution of pollutant concentrations in the Rhône prodelta shows that their decline with distance from their source is due both to mixing with unpolluted sediments, release from contaminated particles during transit and release from sediments after deposition. Beyond the continental shelf, metals of anthropogenic origin, mainly incorporated in faecal pellets, sink and become entrapped in deep sea sediments. Because subsaturating concentrations of trace metals are often found in surface pore waters and storage, therefore, still occurs, co-precipitation with other metal ions existing in slightly supersaturated states has also to be considered. Although phosphate tends to precipitate as apatite after entering sea water, its `definitive' storage in sediments is hindered by certain forms of pollution. Low pH and reducing conditions in sediments enhance phosphate release to the overlying water . Eutrophication may then occur in localised areas. The effects of urban waste water contamination on biogeochemical processes in sediments are examined, in particular processes responsible for the transformation of organic nitrogen. Sediment quality appears to be better defined by the effectiveness of diagenetic processes than by pollutant concentration per se. In general, polluted sediments possess weak capacities to transform organic nitrogen relative to the quantities of organic matter that are available. Such sediment characteristics are indicated by the preferential growth of Caulerpa taxifolia over that of Posidonia oceanica.     

Karyotype morphology and cytogeography in Brunnera and Cynoglottis (Boraginaceae)

A comparative study of karyotype morphology and heterochromatin patterns in Brunnera and Cynoglottis (Boraginaceae) was carried out with traditional methods and Giemsa C-banding. Two polymorphic species of Cynoglottis , each with two subspecies, and two of Brunnera were investigated using native population samples from the central-eastern Mediterranean and Middle East. Pollen size of these samples was measured to investigate relationships with ploidy level. C. barrelieri subsp. barrelieri and subsp. serpentinicola are characterized by In = 18 and smaller pollen grains in contrast to C. chetikiana subsp. chetikiana and subsp. paphlagonica , which are fundamentally tetraploid with 2n = 36. The occurrence of cytotypes with 2n –/2 and 2n = 24 in both subspecies of C. chetikiana , however, would suggest x = 6 as the original haploid number and x = 9 as a derived one. Furthermore, the finding of a hypoploid cytotype with 2n = 16 in C. barrelieri ssp. barrelieri was consistent with previous reports and suggested relationships with Anchusa. Karyoevolutionary processes possibly associated with such a wide chromosome variation in Cynoglottis are discussed. Brunnera macrophylla and B. orientalis share a complement of 2n= 12 and an apparently identical karyotype, which differs from Cynoglottis in terms of asymmetry, chromosome size and morphology. A basic C-banding style was present in Brunnera and Cynoglottis , but heterochromatin content increased from the former to the latter. The parallel increase in chromosome number, heterochromatin content and size of the pollen from Brunnera to Cynoglottis may reflect an evolutionary progression, and is consistent with the supposed ancient origin of Brunnera.     

Thermoluminescence in Chloroplasts as an Indicator of Alterations in Photosystem 2 Reaction Centre by Biotic and Abiotic Stresses

Thermoluminescence (TL) in green plants arises from charge recombination of charged molecules in the reaction centre (RC) of photosystem 2 (PS2) in chloroplasts. The TL technique is used for detection of alterations in the architecture of PS2 RCs. The donor side 'S-states' and the acceptor side quinone molecules (Q_A and Q_B) are involved the charge recombination processes of PS2. High temperature (70–75 °C) glow peaks are also used to detect non-photosynthetic peroxidation processes in thylakoid membranes. The TL peaks with their characteristic charge recombination can be utilised for the study of chloroplast development, ageing, chemical, biotic, and abiotic stress induced alterations in the PS2 RC and for the study of the primary photochemical events of photosynthesis. The technique has been used successfully in the characterisation of transgenic plants in the study of genetically engineered organisms.     

Nitrogen budgets for the Republic of Korea and the Yellow Sea region

Growing populations in northeast Asia have greatly altered the nitrogencycle, with increases in agricultural production to feed the population, andwith increases in N emissions and transboundary air pollution. For example,during the 1900's over 50% of the N deposition over Republic of Korea wasimported from abroad. In this paper, we present biogeochemical budgets ofN for the South Korean peninsula (the Republic of Korea) and for the YellowSea region. We quantify N inputs from atmospheric deposition, fertilizers,biological fixation, and imports of food, feed, and products. We quantifyoutputs in riverine export, crop uptake, denitrification, volatilization,runoff, sedimentation and sea water exchange. Calculations were conductedusing mean values from 1994–1997. All of the nitrogen budgets werepositive, with N inputs exceeding outputs. The excess N inputs gave rise toincreases in N storage in landfills and in groundwater. Annual accumulationof N in the Yellow sea, including inputs from South Korea and otherdrainage areas, was 1229 kt yr^–1 with a residence time for N ofapproximately 1.5 years, thus doubling N content in marine waters every 3years during 1994–1997. The human derived N inputs leads to excessiveeutrophication and pollution of the Yellow Sea.     

The consequences of uncertainties in land use, climate and vegetation responses on the terrestrial carbon

The IPCC SRES narratives were implemented in IMAGE 2.2 to evaluate thefuture condition of the climate system (including the biosphere). A series of scenario experiments was used to assess possible ranges in emissions and concentrations of greenhouse gases, climate change and impacts. These experiments focussed on the role of the terrestrial carbon cycle. The experiments show that the SRES narratives dominate human emissions and not natural processes. In contrary, atmospheric CO2 concentration strongly differs between the experiments. Atmospheric CO2 concentrations range for A1B from 714 to 1009 ppmv CO2 in 2100. The spread of this range is comparable with the full SRES range as implemented in IMAGE 2.2 (515-895 μmol/mol CO2). The most important negative and positive feedback processes in IMAGE 2.2 on the build-up of CO2 concentrations are CO2 fertilisation and soil respiration respectively. Indirect effects of these processes furtherchange land-use patterns, deforestation rates and alter the natural C fluxes. The cumulative effects of these changes have a pronounced influence on the final CO2 concentrations. Our scenario experiments highlight the importance of a proper parameterisation of feedback processes, C-cycle and land use in determining the future states of the climate system.