Synthesis and characterization of histidine-phosphorylated peptides.

Posttranslational phosphorylation of proteins is an important event in many cellular processes. Whereas phosphoesters of serine, threonine, and tyrosine have been studied extensively, only limited information is available for other amino acids modified by a phosphate group. The formation of phosphohistidine residues in proteins was discovered originally in prokaryotic organisms, but also has been found recently in eukaryotic cells. We describe methods for the synthesis and analysis of phosphohistidine-containing peptides, a prerequisite for the investigation of the role of this posttranslational modification in cellular processes.     

Phenolic hydroxyl ionization in calotropins from Calotropis gigantea latex

The ionization of the phenolic hydroxyl groups in calotropins DI and DII isolated from the latex of Calotropis gigantea has been studied by spectrophotometric titration at 295 nm in the pH range 6–13.2. Of the 12 tyrosine residues of calotropin DI and 13 tyrosine residues of calotropin DII, only four residues were ionized reversibly in the pH range 8.9–10.7 with the apparent pK of 9.7. The remaining tyrosine residues were ionized irreversibly in the pH range 11.2–13.2 with the apparent pK of 11.5. Both calotropins showed time-dependent ionization of phenolic groups at 295 nm in the pH range 11.5–12.0. Chemical modification with tetranitromethane suggested the presence of three tyrosine residues on the surface of each calotropin molecule.     

Hydrologic sources of carbon cycling uncertainty throughout the terrestrial–aquatic continuum

Linking hydrologic interactions with global carbon cycling will reduce the uncertainty associated with scaling-up empirical studies and facilitate the incorporation of terrestrial–aquatic linkages within global and regional change models. Much of the uncertainty in estimates of carbon fluxes associated with precipitation and hydrologic transport results from the extensive spatial and temporal heterogeneity in both intrinsic functioning and anthropogenic modification of hydrological cycles. To better understand this variation we developed a landscape ecological approach to coupled hydrologic–carbon cycling that merges local mechanisms with multiple-scale spatial heterogeneity. This spatially explicit framework is applied to examine variability in hydrologic influences on carbon cycling along a continental scale water availability gradient with an explicit consideration of human sources of variability. Hydrologic variation is an important component of the uncertainty in carbon cycling; accounting for this variation will improve understanding of current conditions and projections of future ecosystem responses to global change.     

Immobilization of Candida antarctica lipase B (CALB) on surface-modified rice husk ashes (RHA) via physical adsorption and cross-linking methods

In the present study, the recovery of activity of Candida antarctica lipase B (CALB) immobilized onto surface-modified rice husk ash (RHA) was 90% for both cross-linking and adsorption methods. Both cross-linked and adsorbed immobilized preparations were very stable, retaining more than 48% of their activity over the range of temperatures studied. The optimum temperature and optimum pH values were 37?°C and 7.0, respectively for both immobilized preparations, while the relative activities after storage at 4.0?°C for 60 days were 55% and 65% using cross-linking and adsorption methods, respectively. Also, the activity of the immobilized lipase began to decrease after 10 cycles, more than 58% of the initial activities were still retained after 10 cycles for both immobilization methods. These results indicated that lipase immobilized by cross-linking and adsorption not only effected activity recovery, but also remarkably effected stability, reusability and application adaptability. It can be concluded that, surface-modified RHA can be used as alternative supports for immobilization of CALB for polymerization reactions.     

Combined Interactions of Plant Homeodomain and Chromodomain Regulate NuA4 Activity at DNA Double-Strand Breaks

DNA double-strand breaks (DSBs) represent one of the most threatening lesions to the integrity of genomes. In yeast Saccharomyces cerevisiae, NuA4, a histone acetylation complex, is recruited to DSBs, wherein it acetylates histones H2A and H4, presumably relaxing the chromatin and allowing access to repair proteins. Two subunits of NuA4, Yng2 and Eaf3, can interact in vitro with methylated H3K4 and H3K36 via their plant homeodomain (PHD) and chromodomain. However, the roles of the two domains and how they interact in a combinatorial fashion are still poorly characterized. In this study, we generated mutations in the PHD and chromodomain that disrupt their interaction with methylated H3K4 and H3K36. We demonstrate that the combined mutations in both the PHD and chromodomain impair the NuA4 recruitment, reduce H4K12 acetylation at the DSB site, and confer sensitivity to bleomycin that induces DSBs. In addition, the double mutant cells are defective in DSB repair as judged by Southern blot and exhibit prolonged activation of phospho-S129 of H2A. Cells harboring the H3K4R, H3K4R, K36R, or set1Δ set2Δ mutant that disrupts H3K4 and H3K36 methylation also show very similar phenotypes to the PHD and chromodomain double mutant. Our results suggest that multivalent interactions between the PHD, chromodomain, and methylated H3K4 and H3K36 act in a combinatorial manner to recruit NuA4 and regulate the NuA4 activity at the DSB site.     

Structure of UBE2Z Enzyme Provides Functional Insight into Specificity in the FAT10 Protein Conjugation Machinery

FAT10 conjugation, a post-translational modification analogous to ubiquitination, specifically requires UBA6 and UBE2Z as its activating (E1) and conjugating (E2) enzymes. Interestingly, these enzymes can also function in ubiquitination. We have determined the crystal structure of UBE2Z and report how the different domains of this E2 enzyme are organized. We further combine our structural data with mutational analyses to understand how specificity is achieved in the FAT10 conjugation pathway. We show that specificity toward UBA6 and UBE2Z lies within the C-terminal CYCI tetrapeptide in FAT10. We also demonstrate that this motif slows down transfer rates for FAT10 from UBA6 onto UBE2Z.