基于转录组测序的慈竹笋木质素基因筛选及其表达分析

慈竹（Bambusa emeiensis）纤维素含量丰富,是较好的造纸原料,但竹茎中木质素影响着制浆生产及纸浆质量。目前,对慈竹木质素生物合成机制所知甚少,这限制了遗传调控竹木质素的研究。本文以拟南芥、水稻等植物的已知木质素基因作为查询序列,通过BLASTp和系统进化分析,从10、50、100和150 cm慈竹笋转录组数据中筛选到351个木质素生物合成相关Unigenes,包括51个LAC,37个4CL、26个PAL、34个CCR和25个CAD相关转录子,其数量高于其他已报道的竹类植物。转录丰度和定量基因表达分析发现16个木质素基因,包括2个PAL、5个CCR、3个4CL、2个CADH2和4个LAC,随着笋发育而表达上调,表明其可能与发育性木质素积累相关。     

世界竹子清单更新

编研世界竹子清单(World Checklist of Bamboos,WCB)是竹学的一项基础性工作。文中更正了2016年由世界禾草权威英国皇家植物园——Kew园领衔出版的World Checklist of Bamboos and Rattans竹子部分统计数据,实际为1665种,而非其自述的1642种;持续汇集全球竹种,时间更新至2018年底,WCB(2018)已禀赋计130个竹属,包含1700个竹种。     

圈养大熊猫野化培训期的生境选择特征

大熊猫(Ailuropoda melanoleuca)是我国特有的珍稀物种,也是世界上最濒危的野生动物之一。为了将人工繁育的部分大熊猫个体重引入其历史分布区或复壮野生种群,中国保护大熊猫研究中心从2003年开始进行圈养大熊猫的野外放归工作,通过野化培训以提高圈养大熊猫适应和选择野外环境的能力。对野化培训大熊猫"淘淘"的生境选择研究表明:该野化培训大熊猫幼仔经常活动于新笋密度较大的区域[生境与对照:(2.68±1.14)对(1.58±0.66)],却避开成竹密度过大[(9.91±2.51)对(12.18±4.68)]、竹子较高[(4.57±1.09) m对(4.98±0.66) m]以及枯死竹过多[(2.52±0.86)对(3.39±1.33)]的区域;喜欢活动于离水源[(1.59±0.67)对(2.19±0.87)]和隐蔽场所较近[(5.37±2.14) m对(8.35±7.76)m],以及距离乔木较远[(3.09±0.69) m对(2.70±0.42) m]和郁闭度较低[(1.85±0.57)对(2.10±0.47)]的区域(P < 0.05),新笋密度大小是该栖息地在整个野化培训期间是否被利用的最重要因素。该野化培训大熊猫幼仔保持着与带仔母兽相近的生境选择特征,对竹子环境的选择也与卧龙野生大熊猫相似,野化培训对该大熊猫幼仔产生了积极的作用。野化培训大熊猫幼仔形成的家域和核域面积分别为9.21 hm² 和1.93 hm²,占野化培训圈面积的51.95%和10.89%,其中家域面积仅有卧龙野生大熊猫的1.4%-2.4%,所以在以后的野化培训过程中需要采取增加野化培训圈中环境丰富度等方式,促进野化培训大熊猫形成较大的家域面积。     

Comparisons of soil‐water content between a Moso bamboo (Phyllostachys pubescens) forest and an evergreen broadleaved forest in western Japan

In Japan, forests of Moso bamboo (Phyllostachys pubescens, an exotic invasive giant bamboo) have naturalized and expanded rapidly, replacing surrounding broadleaved and coniferous forests. To evaluate impacts caused by these forest‐type replacements on the hydrological cycle, soil‐water content and its spatial variability in a Moso bamboo forest were compared with those in an adjacent evergreen broadleaved forest, in a case study of a stand in western Japan (northern Kyushu). The volumetric soil‐water content averaged over depths between 0 and 60 cm was consistently higher in the bamboo stand than that in the broadleaved stand. These results contrast with previous studies comparing the soil‐water content in Moso bamboo forests with that in other forest types. The sum of canopy transpiration and soil evaporation (E) in the bamboo stand tended to be larger than that in the broadleaved stand. Small canopy interception loss was reported in the bamboo forest. Therefore, the large amount of E would counterbalance the small canopy interception loss in the bamboo forest. Differences in soil characteristics between the two stands may be the main factor causing differences in soil‐water content. Spatial variation in soil‐water content in the bamboo stand was larger than that in the broadleaved stand, confirming findings in a previous series of our study. This could happen because the well‐developed root‐system in the bamboo forest enhances preferential flow in the soil. To evaluate the effects of aggressive invasion of alien giant bamboo on the ecosystem functions, we recommend further studies measuring various hydrological components in various Moso bamboo forests.     

毛竹GRF转录因子家族的全基因组鉴定与分析

利用生物信息学方法,于毛竹(Phyllostachys edulis (Carr.) Lehaie)全基因组中鉴定获得18个GRF转录因子,并对其理化特性、保守结构域、系统发育关系、mi R396靶位点以及基因表达模式进行了分析。结果表明,18个Pe GRF蛋白长度为170～551 aa,分子量为18.5～58.8 k D;这些Pe GRF蛋白均具有QLQ和WRC结构域,部分Pe GRF含有FFD和TQL保守结构域。对毛竹、拟南芥(Arabidopsis thaliana (L.) Heynh)和水稻(Oryza sativa L.)的系统进化分析结果显示,毛竹18个GRF可分为3个亚类,且单子叶植物毛竹和水稻的GRF转录因子亲缘关系更近。mi R396靶位点预测分析结果发现,在13个Pe GRF基因序列的编码区存在毛竹mi R396结合位点; Pe GRF基因表达模式分析结果显示,Pe GRF主要在毛竹的竹笋中表达。     

Red panda fine‐scale habitat selection along a Central Himalayan longitudinal gradient

Red panda Ailurus fulgens, an endangered habitat specialist, inhabits a narrow distribution range in bamboo abundance forests along mountain slopes in the Himalaya and Hengduan Mountains. However, their habitat use may be different in places with different longitudinal environmental gradients, climatic regimes, and microclimate. This study aimed to determine the habitat variables affecting red panda distribution across different longitudinal gradients through a multivariate analysis. We studied habitat selection patterns along the longitudinal gradient in Nepal's Himalaya which is grouped into the eastern, central, and western complexes. We collected data on red panda presence and habitat variables (e.g., tree richness, canopy cover, bamboo abundance, water availability, tree diameter, tree height) by surveys along transects throughout the species’ potential range. We used a multimodal inference approach with a generalized linear model to test the relative importance of environmental variables. Although the study showed that bamboo abundance had a major influence, habitat selection was different across longitudinal zones. Both canopy cover and species richness were unimportant in eastern Nepal, but their influence increased progressively toward the west. Conversely, tree height showed a decreasing influence on habitat selection from Eastern to Western Nepal. Red panda's habitat selection revealed in this study corresponds to the uneven distribution of vegetation assemblages and the dry climatic gradient along the eastern‐western Himalayas which could be related to a need to conserve energy and thermoregulate. This study has further highlighted the need of importance of bamboo conservation and site‐specific conservation planning to ensure long‐term red panda conservation.     

The effects of olfactory stimulation on the behavior of captive ring‐tailed lemurs (Lemur catta)

Ring‐tailed lemurs reside in many animal collections worldwide. Lemur welfare may be a cause of concern due to some captive individuals exhibiting stereotypic behavior. Despite these concerns, there has been little exploration of methods of environmental enrichment for ring‐tailed lemurs. Olfactory stimulation can enhance captive animal welfare by encouraging species‐typical behaviors, enhancing behavioral diversity, and decreasing stereotypic behaviors. We aimed to investigate the effects of olfactory stimulation via lavender, peppermint, coconut, and prey odor upon the behavior of eight captive ring‐tailed lemurs. We exposed the lemurs to six individual odor conditions (odor control, novel object control, lavender, peppermint, coconut, and Morio worms) and observed them for 4 hr a day for 3 days with an intervening period of 4 days between conditions. We recorded the lemurs’ behavior under each condition using instantaneous scan sampling. We found significant effects of olfactory stimulation on the ring‐tailed lemurs’ behavior in the initial analysis but these did not survive correction for multiple testing. Overall, while our findings are suggestive of a general effect of olfactory stimulation on the captive ring‐tailed lemurs they did not indicate a marked influence of olfactory condition. However, further investigation with a larger sample size and more biologically relevant odors may be beneficial to fully examine potential effects of olfactory stimulation in captive lemurs.     

竹叶提取物对心肌缺血再灌注损伤的保护作用

本文通过两种不同的模型来探讨竹叶提取物对心肌缺血再灌注(缺氧/复氧)损伤的保护作用。在体内模型中不同剂量的竹叶提取物均提高了模型组室内压最大上升和下降速率,降低了左室末期舒张期压力,提高了心输出量。同时降低了模型组肌酸磷酸激酶及乳酸脱氢酶的活性,减少了丙二醛的含量,增加了超氧化物歧化酶的活性,通过电压依赖性钙通道及受体依赖性钙通道降低了钙的含量。说明竹叶提取物对心肌缺血再灌注(缺氧复氧)损伤具有保护作用,其作用是通过电压依赖性钙通道及受体依赖性钙通道降低了钙的含量而对心肌缺血再灌注(缺氧复氧)损伤产生保护作用。     

从野外大熊猫的粪便估计年龄及其种群年龄结构的研究

本文对野外大熊猫粪便中的竹秆咬节及切缘与竹叶残片量度和破碎状况的研究,并以此对已知年龄个体的牙齿切片和齿冠磨损程度进行验证,发现通过粪便分析,可将野外大熊猫种群,大体划分为4个年龄组。     

林地覆盖对雷竹林土壤微生物特征及其与土壤养分制约性关系的影响

为了探讨林地覆盖雷竹林退化机理,给退化雷竹林恢复提供理论参考,对不同覆盖年限(CK、1、3 a 和6 a) 雷竹林土壤微生物区系组成和生物量碳(C_mic)、氮(N_mic)、磷(P_mic)等特征因子进行了测定,并分析了其与土壤养分的制约性关系。结果表明:(1) 雷竹林土壤微生物以细菌为主,真菌次之,放线菌最少,分别占土壤微生物总量的90.11%-98.03%、1.04%-9.22%和0.67%-1.37%。随覆盖年限增加,细菌、放线菌比率呈下降趋势,真菌比率呈上升趋势;土壤微生物总数、细菌和放线菌数量及C_mic、N_mic、P_mic均呈先升高后降低的变化趋势,试验雷竹林间差异极显著,真菌数量总体呈极显著升高趋势。(2)雷竹林土壤微生物特征因子与土壤有机质(SOM)、全氮(TN)、全磷(TP)、碱解氮(Available nitrogen, AN)和pH均呈显著或极显著相关,其中,CK和覆盖1 a、3 a雷竹林土壤微生物特征因子与土壤养分主要呈正相关,与pH呈负相关,而覆盖6 a雷竹林则相反。(3)不同覆盖年限雷竹林土壤养分与土壤微生物的制约性关系存在一定的差异,CK雷竹林土壤SOM、TN、AN、速效钾(AK)和pH主要影响土壤C_mic、N_mic和细菌,覆盖1 a雷竹林土壤SOM、TN、TP和AK主要影响土壤P_mic、放线菌和细菌,覆盖3 a雷竹林土壤SOM、TN、速效磷(AP)和AN主要影响土壤N_mic、放线菌和真菌,覆盖6 a雷竹林土壤SOM、TN和pH主要影响土壤N_mic、真菌。研究表明:长期覆盖雷竹林土壤细菌、放线菌数量与比例明显降低,真菌数量与比例明显提高,土壤养分与土壤微生物的制约性作用关系会发生较为明显变化,产生土壤障害,这是覆盖雷竹林退化的主要原因之一。