The mechanism of background extinction

Following publication of On the Origin of Species, biologists concentrated on and resolved the mechanisms of adaptation and speciation, but largely ignored extinction. Thus, extinction remained essentially a discipline of palaeontology. Adequate language is not available to describe extinction phenomena because they must be discussed in the passive voice, wherein populations simply ‘go extinct’ without reference to process, specifics, effects, or causality. Extinction is also described typically in terms of its dynamics (including rate or risk), and although correlative variables enhance our ability to predict extinction, they do not necessarily enable an understanding of process. Yet background extinction, like evolution, is a process requiring a functional explanation, without which it is impossible to formulate mechanisms. We define the mechanism of background extinction as a typically long‐term, multi‐generational loss of reproductive fitness. This simple concept has received little credence because of a perception that excess generation of progeny ensures population sustainability, and perhaps the misconception that the loss of reproductive fitness somehow constitutes selection against reproduction itself. During environmental shifts, reproductive fitness is compromised when biotic or abiotic extremes consistently exceed existing norms of reaction. Subsequent selection will now favour individual survival over reproductive fitness, initiating long‐term negative selection pressure and population decline. Background extinction consists typically of two intergrading phases: habitat attenuation and habitat dissolution. These processes generate the relict populations that characterize many species undergoing background extinction. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 105 , 255–268.     

Modern geochemical and molecular tools for monitoring in-situ biodegradation of MTBE and TBA

Methyl tert-butyl ether (MTBE) is a major gasoline oxygenate worldwide and a widespread groundwater contaminant. Natural attenuation of MTBE is of practical interest as a cost effective and non-invasive approach to remediation of contaminated sites. The effectiveness of MTBE attenuation can be difficult to demonstrate without verification of the occurrence of in-situ biodegradation. The aim of this paper is to discuss the recent progress in assessing in-situ biodegradation. In particular, compound-specific isotope analysis (CSIA), molecular techniques based on nucleic acids analysis and in-situ application of stable isotope labels will be discussed. Additionally, attenuation of tert-butyl alcohol (TBA) is of particular interest, as this compound tends to occur alongside MTBE introduced from the gasoline or produced by (mainly anaerobic) biodegradation of MTBE.     

太湖典型草、藻型湖区紫外辐射的衰减及影响因素分析

2004年4月通过野外原位观测和实验室测定相结合的方法对东太湖和梅梁湾典型草、藻型湖区紫外辐射光谱衰减及影响因素进行了研究。结果表明,320nm(UV-B)、380nm(UV-A)的衰减系数在6.33~19.59m-1、3.41~13.64m-1间变化,对应的1%表面光强穿透深度分别为0.24~0.73m、0.35~1.35m,到达湖面的99%UV-B辐射在0.5m左右表层水就衰减完毕,东太湖和梅梁湾紫外辐射衰减系数存在明显的湖区差异;溶解性有机碳(DOC)的浓度在6.60~17.17mg/L间变化,其均值为(9.99±2.48)mg/L;375nm波长处CDOM吸收系数为1.78~6.25m-1,均值为(3.70±1.10)m-1;在短波部分CDOM吸收与DOC浓度存在显著性相关,相关性大致随波长降低而增加,320nm处的线性关系式:ad320=0.885DOC 2.182;紫外辐射衰减主要受制于水体中的CDOM浓度,衰减系数与DOC浓度、CDOM吸收系数存在显著性相关,340nm处的关系式分别为:Kd340=0.82 1.05DOC、Kd340=1.98 1.49ad340。在太湖紫外辐射衰减还要受悬浮物和叶绿素a浓度的影响,衰减系数与DOC、叶绿素a和悬浮物浓度多元回归的结果明显要高于单独与DOC浓度或CDOM吸收系数的回归结果。     

螺旋藻细胞培养与光能利用的关系

对钝顶螺旋藻(Spirulina platensis Geitler)细胞培养体系的光衰减以及连续培养条件下藻细胞生长对光能的利用特性进行了分析,结果表明改进的Lambert-Beer定律I=I0exp(-αxL)可较好地描述细胞浓度及光程对光衰减的综合影响;引入平均光强和细胞平均比消光量概念,借鉴Monod方程形式,较好地描述了它们与比生长速率之间的关系,并求得最大比生长速率μm、光强半饱和参数kI、光能维持系数m和得率系数YG分别为μm=1.75/d,kI=1.453×10     

老年男性教师骨密度的调查

目的 为了解老年性骨质疏松情况,用超声骨密度仪对150例老年男性教师做跟骨超振幅衰减值的测试研究。方法：用DMS公怀UBIS5000型骨密度超声仪检查跟骨,研究受检者的年龄、体重、身高和巳患病咎与测得超声振幅衰减值（BUA）,声速（SOS）,骨硬度（STI）和相对骨折危险性（RRF）等参数之间的关系。结果：本仪器输出3种结果供医师参考：1.一幅灰阶图,2.一幅彩色图和曲线图,3.感兴趣区所测得的参数,受检者的平均BUA为63.87dB/MHz,SOS为1485.21m/s,本文数据经Statpal软件处理,得出回归公式：体重=189.1417 0.2062BUA-0.0224SOS,R=0.0466,P值有显著意义。结论：BUA值为主要参数,SOS为补充参数,作为评估老年男性教师的骨密度情况,假如BUA值突然下降则提示近期可能发生骨质疏松。     

Saroglitazar is noninferior to fenofibrate in reducing triglyceride levels in hypertriglyceridemic patients in a randomized clinical trial

Saroglitazar, being a dual PPAR-α/γ agonist, has shown beneficial effect in diabetic dyslipidemia and hypertriglyceridemia. Fibrates are commonly used to treat severe hypertriglyceridemia. However, the effect of saroglitazar in patients with moderate to severe hypertriglyceridemia was not evaluated. We conducted a study to compare the efficacy and safety of saroglitazar (4 mg) with fenofibrate (160 mg) in patients with moderate to severe hypertriglyceridemia. This was a multicenter, randomized, double-blinded, double-dummy, active-control, and noninferiority trial in adult patients with fasting triglyceride (TG) levels of 500–1,500 mg/dl. The patients were randomized in a 1:1 ratio to receive daily dose of saroglitazar or fenofibrate for 12 weeks. The primary efficacy end point was the percent change in TG levels at week 12 relative to baseline. The study comprised of 41 patients in the saroglitazar group and 41 patients in the fenofibrate group. We found that the percent reduction from baseline in TG levels at week 12 was significantly higher in the saroglitazar group (least square mean = ?55.3%; SE = 4.9) compared with the fenofibrate group (least square mean = ?41.1%; SE = 4.9; P = 0.048). Overall, 37 treatment-emergent adverse events (AEs) were reported in 24 patients (saroglitazar: 13; fenofibrate: 11). No serious AEs were reported, and no patient discontinued the study because of AEs. We conclude that saroglitazar (4 mg) is noninferior to fenofibrate (160 mg) in reducing TG levels after 12 weeks of treatment, was safe, and well tolerated.     

Evaluation of UVB reduction by materials commonly used in reptile husbandry

Ultraviolet B (UVB) irradiation (285–320 nm) is considered important for metabolic processes and reproduction in many reptile species by facilitating the synthesis of vitamin D₃. In captivity, UVB radiation reaching an animal may be diminished by the properties of the materials used in enclosure construction. We investigated the UVB‐attenuating properties of 14 materials commonly used in cage tops for reptile enclosures. Irradiances were measured by two types of hand‐held broadband radiometers and the D₃‐synthesizing potential was assessed by the use of an in vitro model. For UV‐transmitting acrylic, a significant discrepancy between meter irradiances and in vitro model values for D₃‐synthesizing ability was observed, with meter readings underestimating the blocking effect. In contrast, attenuation of UVB irradiances by air‐permeable materials, such as wire screen, measured with meters was generally comparable to the attenuation of D₃‐synthesizing ability as measured by in vitro models. Relatively simple meter readings can therefore be used to reflect reduction of D₃‐synthesizing ability through air‐permeable materials. Zoo Biol 26:417–423, 2007. © 2007 Wiley‐Liss, Inc.     

Watching Every Step of the Way: Junín Virus Attenuation Markers in the Vaccine Lineage

The Arenaviridae family includes several hemorrhagic fever viruses which are important emerging pathogens. Junín virus, a member of this family, is the etiological agent of Argentine Hemorrhagic Fever (AHF). A collaboration between the Governments of Argentina and the USA rendered the attenuated Junín virus vaccine strain Candid#1. Arenaviruses are enveloped viruses with genomes consisting of two single-stranded RNA species (L and S), each carrying two coding regions separated by a stably structured, non-coding intergenic region. Molecular characterization of the vaccine strain and of its more virulent ancestors, XJ13 (prototype) and XJ#44, allows a systematic approach for the discovery of key elements in virulence attenuation. We show comparisons of sequence information for the S RNA of the strains XJ13, XJ#44 and Candid#1 of Junín virus, along with other strains from the vaccine lineage and a set of Junín virus field strains collected at the AHF endemic area. Comparisons of nucleotide and amino acid sequences revealed different point mutations which might be linked to the attenuated phenotype. The majority of changes are consistent with a progressive attenuation of virulence between XJ13, XJ#44 and Candid#1. We propose that changes found in genomic regions with low natural variation frequencies are more likely to be associated with the virulence attenuation process. We partially sequenced field strains to analyze the genomic variability naturally occurring for Junín virus. This information, together with the sequence analysis of strains with intermediate virulence, will serve as a starting point to study the molecular bases for viral attenuation.