模拟失重环境对大肠杆菌K12表型异质性亚群菌株的影响

【背景】我国未来几年深空探索任务将呈"井喷式"发展,微生物对于航天活动的影响越来越引起关注,而国内外少有表型异质性亚群的研究。【目的】从表型异质性的角度探讨低剪切力模拟失重环境(Low-shearmodeledmicrogravity,LSMMG)和低剪切力正常重力环境(Low-shearnormalgravity,LSNG)对大肠杆菌K12造成的影响。【方法】利用旋转细胞培养系统模拟失重环境对大肠杆菌K12进行连续传代培养,从单克隆形态、颜色以及菌体形态等方面挑选出表型异质性的亚群菌株,对不同菌株进行增殖速率、抗生素耐药性、生物被膜形成、环境压力抵抗力以及细胞毒性的测定,以此评估低剪切力和模拟失重环境对大肠杆菌K12的影响。【结果】利用旋转细胞培养系统连续传代培养,总共分离出4株形态不同的表型异质性亚群菌株,其中2株来自模拟失重组(M1,Ma),另外2株来自正常重力对照组(N1,Na);4株亚群与原始菌株(P)相比,在增殖速率、生物被膜形成、环境压力抵抗力和细胞毒性方面均有增强或减弱的明显变化,对于抗生素的耐药性无明显变化。【结论】低剪切力模拟失重环境以及存在低剪切力的正常重力环境均能引起大肠杆菌表型异质性变化,与原始菌株相比,表型异质性亚群菌株在分化上并没有统一的方向,但仍需警惕那些可能对人类造成危害的变化表型。     

Computational studies of adsorption in metal organic frameworks and interaction of nanoparticles in condensed phases

In this review, we describe recent efforts to systematically study nano-structured metal organic frameworks (MOFs), also known as metal organic heat carriers, with particular emphasis on their application in heating and cooling processes. We used both molecular dynamics and grand canonical Monte Carlo simulation techniques to gain a molecular-level understanding of the adsorption mechanism of gases in these porous materials. We investigated the uptake of various gases such as refrigerants R12 and R143a. We also evaluated the effects of temperature and pressure on the uptake mechanism. Our computed results compared reasonably well with available measurements from experiments, thus validating our potential models and approaches. In addition, we investigated the structural, diffusive and adsorption properties of different hydrocarbons in Ni₂(dhtp). Finally, to elucidate the mechanism of nanoparticle dispersion in condensed phases, we studied the interactions among nanoparticles in various liquids, such as n-hexane, water and methanol.     

论生态平衡和林火烈度

 本文探讨林火对森林生态系统的干扰,提出火烈度指标作为衡量标准。建议采用林木蓄积量作为森林生态系统的状态指数。根据林火蔓延过程的物理分析,导出一种模型化的燃烧蔓延方程,并对兴安落叶松(Larix gmelinii)在不同蔓延速度下计算了火烈度。结合火烧迹地调查资料指出在不同火烈度下,林火对森林生态系统的影响及其对策。     

Construction and elementary mode analysis of a metabolic model for Shewanella oneidensis MR-1

A stoichiometric model describing the central metabolism of Shewanella oneidensis MR-1 wild-type and derivative strains was developed and used in elementary mode analysis (EMA). Shewanella oneidensis MR-1 can anaerobically respire a diverse pool of electron acceptors, and may be applied in several biotechnology settings, including bioremediation of toxic metals, electricity generation in microbial fuel cells, and whole-cell biocatalysis. The metabolic model presented here was adapted and verified by comparing the growth phenotypes of 13 single- and 1 double-knockout strains, while considering respiration via aerobic, anaerobic fumarate, and anaerobic metal reduction (Mtr) pathways, and utilizing acetate, n-acetylglucosamine (NAG), or lactate as carbon sources. The gene ppc, which encodes phosphoenolpyruvate carboxylase (Ppc), was determined to be necessary for aerobic growth on NAG and lactate, while not essential for growth on acetate. This suggests that Ppc is the only active anaplerotic enzyme when cultivated on lactate and NAG. The application of regulatory and substrate limitations to EMA has enabled creation of metabolic models that better reflect biological conditions, and significantly reduce the solution space for each condition, facilitating rapid strain optimization. This wild-type model can be easily adapted to include utilization of different carbon sources or secretion of different metabolic products, and allows the prediction of single- and multiple-knockout strains that are expected to operate under defined conditions with increased efficiency when compared to wild type cells.     

Apparent mass of the standing human body when using a whole-body vibration training machine: Effect of knee angle and input frequency

Several studies have investigated the transmission of vibration from the vibrating plate of a whole-body vibration training machine (WBVTM) to different locations on the human body. No known work has investigated the interface force between the vibrating plate of the machine and the human body. This paper investigates the effect of bending the knees and the vibration frequency on the interface force (presented as apparent mass (AM)) between the vibrating plate and the body. Twelve male subjects stood with four different knee angles (180, 165, 150 and 135°) and were exposed to sinusoidal vertical vibration at eight frequencies in the range of 17–42 Hz. The vertical acceleration and the interface force between the body and the vibrating plate were measured and used to calculate the AM. The acceleration and force depended on the frequency and were found to vary with both the adopted posture and subject. The AM generally decreased with increasing the frequency but showed a peak at 24 Hz which was clearer when the knees were bent. Bending the knees showed an effect similar to increasing the damping of a system with base excitation; increasing the damping reduced the AM in the resonance region but increased the AM at higher frequencies. Users of WBVTMs have to be careful when choosing the training posture: although, as shown in previous studies, bending the knees reduces the transmission of vibration to the spine, it increases the interface forces which might indicate increased stresses on the lower legs and joints.     

Sanguinarine Decreases Cell Stiffness and Traction Force and Inhibits the Reactivity of Airway Smooth Muscle Cells in Culture

Airway hyperresponsiveness (AHR) is the cardinal character of asthma, which involves the biomechanical properties such as cell stiffness and traction force of airway smooth muscle cells (ASMCs). Therefore, these biomechanical properties comprise logical targets of therapy. β2-adrenergic agonist is currently the mainstream drug to target ASMCs in clinical practice for treating asthma. However, this drug is known for side effects such as desensitization and non-responsiveness in some patients. Therefore, it is desirable to search for new drug agents to be alternative of β2-adrenergic agonist. In this context, sanguinarine, a natural product derived from plants such as bloodroots, that has been reported to relax gut smooth muscle emerges as a potential candidate. So far, it is unknown whether sanguinarine can regulate the biomechanical properties of ASMCs and reactivity of ASMCs to irritants. Thus, we tested the hypothesis that sanguinarine reduce the contractile potentials of ASMCs in culture. To do so, the primary cultured rat ASMCs were first treated with different concentration of sanguinarine. Then, cell stiffness, traction force, fiber distribution, and calcium signaling of the ASMCs were evaluated by optical magnetic twisting cytometry, Fourier transform traction microscopy, atomic force microscopy, and Fluo-4/AM based fluorescence confocal scanning microscopy, respectively. The results indicated that sanguinarine (0.05 and 0.5 μmol/L) significantly decreased cell stiffness and traction force, inhibited reactivity of ASMCs to histamine, and disrupted the fiber structures in ASMCs in dose-dependent manner. These findings establish that sanguinarine can indeed change the biomechanical properties of ASMCs and may be used to treat AHR in asthma.     

Verification of Beam Models for Ionic Polymer-Metal Composite Actuator

Ionic Polymer-Metal Composite (IPMC) can work as an actuator by applying a few voltages.A thick IPMC actuator,whereNafion-117 membrane was synthesized with polypyrrole/alumina composite filler,was analyzed to verify the equivalent beamand equivalent bimorph beam models.The blocking force and tip displacement of the IPMC actuator were measured with a DCpower supply and Young’s modulus of the IPMC strip was measured by bending and tensile tests respectively.The calculatedmaximum tip displacement and the Young’s modulus by the equivalent beam model were almost identical to the correspondingmeasured data.Finite element analysis with thermal analogy technique was utilized in the equivalent bimorph beam model tonumerically reproduce the force-displacement relationship of the IPMC actuator.The results by the equivalent bimorph beammodel agreed well with the force-displacement relationship acquired by the measured data.It is confirmed that the equivalentbeam and equivalent bimorph beam models are practically and effectively suitable for predicting the tip displacement,blockingforce and Young’s modulus of IPMC actuators with different thickness and different composite of ionic polymer membrane.     

Methods for reducing nonspecific interaction in antibody-antigen assay via atomic force microscopy

We developed a method to measure the rupture forces between antibody and antigen by atomic force microscopy (AFM). Previous studies have reported that in the measurement of antibody–antigen interaction using AFM, the specific intermolecular forces are often obscured by nonspecific adhesive binding forces between antibody immobilized cantilever and substrate surfaces on which antigen or nonantigen are fixed. Here, we examined whether detergent and nonreactive protein, which have been widely used to reduce nonspecific background signals in ordinary immunoassay and immunoblotting, could reduce the nonspecific forces in the AFM measurement. The results showed that, in the presence of both nonreactive protein and detergent, the rupture forces between anti-ferritin antibodies immobilized on a tip of cantilever and ferritin (antigen) on the substrate could be successfully measured, distinguishing from nonspecific adhesive forces. In addition, we found that approach/retraction velocity of the AFM cantilever was also important in the reduction of nonspecific adhesion. These insights will contribute to the detection of specific molecules at nanometer scale region and the investigation of intermolecular interaction by the use of AFM.     

AFM imaging of surface adsorbed polymeric 3-alkylpyridinium salts from the marine sponge Reniera sarai

Bioactive 3-alkylpyridinium polymers (poly-APS) have recently been isolated from the marine sponge Reniera sarai. Previous results have shown that these molecules in aqueous solutions form supramolecular aggregates with an average hydrodynamic radius of 23±2 nm. To obtain additional evidences about the shape and the dimensions of poly-APS aggregates, we used atomic force microscopy (AFM) operating in tapping mode. The images clearly showed adsorbed aggregates with a lateral dimension of ≈40 nm and a thickness of the order of ≈1 nm. The distribution of volumes of the adsorbed aggregates is very similar to the distribution of hydrodynamic radii as obtained from the dynamic light scattering experiments. The volume distribution of these aggregates shows a maximum at 1750 nm³, which corresponds to a sphere with a radius of 7.5 nm.