The growth of soybean under free air [CO<Subscript>2</Subscript>] enrichment (FACE) stimulates photosynthesis while decreasing in vivo Rubisco capacity

Down-regulation of light-saturated photosynthesis (A_sat) at elevated atmospheric CO₂ concentration, [CO₂], has been demonstrated for many C₃ species and is often associated with inability to utilize additional photosynthate and/or nitrogen limitation. In soybean, a nitrogen-fixing species, both limitations are less likely than in crops lacking an N-fixing symbiont. Prior studies have used controlled environment or field enclosures where the artificial environment can modify responses to [CO₂]. A soybean free air [CO₂] enrichment (FACE) facility has provided the first opportunity to analyze the effects of elevated [CO₂] on photosynthesis under fully open-air conditions. Potential ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) carboxylation (V_c,max) and electron transport through photosystem II (J_max) were determined from the responses of A_sat to intercellular [CO₂] (C_i) throughout two growing seasons. Mesophyll conductance to CO₂ (g_m) was determined from the responses of A_sat and whole chain electron transport (J) to light. Elevated [CO₂] increased A_sat by 15–20% even though there was a small, statistically significant, decrease in V_c,max. This differs from previous studies in that V_c,max/J_max decreased, inferring a shift in resource investment away from Rubisco. This raised the C_i at which the transition from Rubisco-limited to ribulose-1,5-bisphosphate regeneration-limited photosynthesis occurred. The decrease in V_c,max was not the result of a change in g_m, which was unchanged by elevated [CO₂]. This first analysis of limitations to soybean photosynthesis under fully open-air conditions reveals important differences to prior studies that have used enclosures to elevate [CO₂], most significantly a smaller response of A_sat and an apparent shift in resources away from Rubisco relative to capacity for electron transport.Abbreviations FACE Free air [CO₂] enrichment - Rubisco Ribulose-1,5-bisphosphate carboxylase/oxygenase - RuBP Ribulose-1,5-bisphosphate - SoyFACE Soybean free air [CO₂] enrichment - VPD Vapor pressure deficit     

Spatial and temporal variation of atmospheric nitrogen deposition in the North China Plain

A monitoring network of nine sites was established to determine the spatial and temporal variation of atmospheric nitrogen (N) deposition in the North China Plain (NCP) over a two-year period. The annual bulk deposition of inorganic N in the North China Plain ranged from 18.4 to 38.5 kg/hm² and averaged 28.0 kg/hm². The concentration of NH₄ -N and NO₃^--N in rainwater averaged 3.76 and 1.85 mg/L, respectively, which were significantly higher than the values at background sites in China (normally less than 0.5 mg/L). Annual bulk deposition of inorganic N in the Beijing area (32.5 kg/hm²) was higher than that in Shandong and Hebei provinces (21.2 kg/hm² on an average). Also bulk N deposition was much greater in Dongbeiwang and Fangshan than in Yanqing and Shunyi counties. Significant spatial variation of bulk deposition was observed in the Beijing area because of variation of precipitation, and 60% of bulk deposition occurred from June to September. Bulk deposition of NH₄ -N was 2.0 times that of NO₃^--N deposition at the rural monitoring sites. However, the situation was reversed at the Beijing Academy of Agricultural-Forestry Sciences (BAAFS), the unique urban monitoring site. The results suggest that reduced N in precipitation is dominant in rural regions, but oxidized N is the major form in urban regions. The positive relationship between inorganic N deposition and precipitation can be fitted by a power equation (r²= 0.67), showing an increase of NH₄ -N and NO₃^--N inputs with increased precipitation. Wet deposition of N accounted for 73% of the bulk deposition, implying that dry deposition of N, particularly NH₄ -N from dust, is important in the North China Plain.     

Effects of elevated atmospheric CO2 on soil enzyme activities at different nitrogen application treatments

It has been predicted that elevated atmospheric CO₂ will increase enzyme activity as a result of CO₂-induced carbon entering the soil. The objective of this study was to investigate the effects of elevated atmospheric CO₂ on soil enzyme activities under a rice/wheat rotation. This experiment was conducted in Wuxi, Jiangsu, China as part of the China FACE (Free Air Carbon Dioxide Enrichment) Project. Two atmospheric CO₂ concentrations (580±60) and (380±40) μmol·mol^-1) and three N application treatments (low-150, normal-250 and high-350 kg N·hm^-2) were included. Soil samples (0-10 cm) were collected for analysis of β-glucosidase, invertase, urease, acid phosphates and β-glucosaminidase activities. The results revealed that with elevated atmospheric CO₂ β-glucosidase activity significantly decreased (P < 0.05) at low N application rates; had no significant effect with a normal N application rate; and significantly increased (P < 0.05) with a high N application rate. For urease activity, at low and normal N application rates (but not high N application rate), elevated atmospheric CO₂ significantly increased (P < 0.05) it. With acid phosphatase elevated atmospheric CO₂ only had significant higher effects (P < 0.05) at high N application rates. Under different CO₂ concentration, effects of N fertilization are also different. Soil β-glucosidase activity at ambient CO₂ concentration decreased with N fertilization, while it increased at elevated CO₂ concentration. In addition, invertase and acid phosphatase activities at elevated CO₂ concentration, significantly increased (P < 0.05) with N treatments, but there was no effect with the ambient CO₂ concentration. For urease activity, at ambient CO₂ concentration, N fertilization increased it significantly (P < 0.05), whereas at elevated CO₂ concentration it was not significant. Additionally, with β-glucosaminidase activity, there were no significant effects from N application. In general, then, elevated atmospheric CO₂ increased soil enzyme activity, which may be attributed to the following two factors: (1) elevated atmospheric CO₂ led to more plant biomass in the soil, which in turn stimulated soil microbial biomass and activity; and (2) elevated atmospheric CO₂ increased plant photosynthesis, thereby increasing plant-derived soil enzymes.     

大气热层结条件对林冠显热的影响

应用欧拉二阶闭合模型研究了大气热层结条件下森林冠层显热通量源汇分布和通量特征.结果表明:白天,冠层上的不稳定层结和冠层下的稳定层结是森林冠层大气层结的一种特有现象;温度廓线的变化表明林冠高度2/3处存在较强的热源;冠层内大气处于弱稳定状态时,热量继续向上输送,呈现出热通量的反梯度输送.显热通量日变化的模拟值与实测值吻合,其R2=0.9035(P0.01).在显热收支方程中添加浮力项,可提高反演模型在实际大气中的模拟精度,从而改善模型对热通量收支的模拟能力.     

Airborne pollen sampling in Toledo, Central Spain

Toledo is one of the main tourist spots of Spain, attracting around two million visitors per year. Its geographical situation in the vast and scarcely monitored Region of Castilla La Mancha and the high number of tourists (especially in the spring) has resulted in the Spanish Aerobiology Network (REA) making this city a major study objective. Air monitoring studies carried out using REA sampling procedures commenced in October 2002. Thirty-two pollen types were identified during the sampling period (October 2002 to October 2004). The annual Pollen Index (PI) was 44124 for the agricultural year October 2002–October 2003, and 29666 in the same period of 2003–2004. The most abundant taxa were, in decreasing order of dominance: Cupressaceae, Quercus, Poaceae, Populus, Olea, Urticaceae, Platanus, Pinus and Ulmus. Other, less well-represented pollen taxa included Salix, Alnus, Fraxinus and Tamarix, which were characteristic of riverside areas, and Morus, Artemisia and Chenopodiaceae. The presence of Castanea pollen grains originating from chestnut crops far away from the city was clearly an example of long-distance transport. The highest concentrations of airborne pollen were detected from March to May and also in January, due to the flowering of Cupressaceae species. In general, there was a correlation between pollen and meteorological parameters: a positive correlation with temperature and a negative correlation with rainfall and humidity during the pre-peak period. A negative correlation between temperature and some tree pollen taxa was detected in the principal pollen period correlation analysis due to their long pollination periods.     

Enrichment for microbes living in association with plant tissues

AIMS: To investigate a cultivation-independent method of enrichment for microbes living in association with plant tissues. METHODS AND RESULTS: A large quantity of leaves or seeds was enzymatically hydrolyzed, and the pellets were collected by differential centrifugation. Enzyme concentration, buffer and incubation time were optimized for release of plant-associated microbes. The relative abundance of plant nuclear DNA and bacterial DNA in the enriched sample was estimated by PCR amplification of genome-specific marker genes. The efficiency of microbe enrichment was estimated from the proportion of bacterium-derived clones and their restriction fragment length polymorphism (RFLP) types as detected by 16S rRNA gene-based techniques. With a higher ratio of bacterial to plant nuclear DNA, the enriched samples showed a considerably enhanced proportion of bacterium-derived clones and a wider sequence diversity of those clones. CONCLUSIONS: The method described here proved to be remarkably effective in enriching for bacteria living in association with plant tissues. SIGNIFICANCE AND IMPACT OF THE STUDY: The method can be applied to study plant-associated microbes in the field of environmental molecular ecology and environmental metagenomics.     

The gut microenvironment of sediment-dwelling Chironomus plumosus larvae as characterised with O2, pH, and redox microsensors

We devised a set-up in which microsensors can be used for characterising the gut microenvironment of aquatic macrofauna. In a small flow cell, we measured microscale gradients through dissected guts (O₂, pH, redox potential [E _h ]), in the haemolymph (O₂), and towards the body surface (O₂) of Chironomus plumosus larvae. The gut microenvironment was compared with the chemical conditions in the lake sediment in which the animals reside and feed. When the dissected guts were incubated at the same nominal O₂ concentration as in haemolymph, the gut content was completely anoxic and had pH and E _h values slightly lower than in the ambient sediment. When the dissected guts were artificially oxygenated, the volumetric O₂-consumption rates of the gut content were at least 10× higher than in the sediment. Using these potential O₂-consumption rates in a cylindrical diffusion–reaction model, it was predicted that diffusion of O₂ from the haemolymph to the gut could not oxygenate the gut content under in vivo conditions. Additionally, the potential O₂-consumption rates were so high that the intake of dissolved O₂ along with feeding could be ruled out to oxygenate the gut content. We conclude that microorganisms present in the gut of C. plumosus cannot exhibit an aerobic metabolism. The presented microsensor technique and the data analysis are applicable to guts of other macrofauna species with cutaneous respiration.     

Season-long elevation of ozone concentration to projected 2050 levels under fully open-air conditions substantially decreases the growth and production of soybean

Mean surface ozone concentration is predicted to increase 23% by 2050. Previous chamber studies of crops report large yield losses caused by elevation of tropospheric ozone, and have been the basis for projecting economic loss. This is the first study with a food crop (soybean, Glycine max) using free-air gas concentration enrichment (FACE) technology for ozone fumigation. A 23% increase in ozone concentration from an average daytime ambient 56 p.p.b. to a treatment 69 p.p.b. over two growing seasons decreased seed yield by 20%. Total above-ground net primary production decreased by 17% without altering dry mass allocation among shoot organs, except seed. Fewer live leaves and decreased photosynthesis in late grain filling appear to drive the ozone-induced losses in production and yield. These results validate previous chamber studies suggesting that soybean yields will decrease under increasing ozone exposure. In fact, these results suggest that when treated under open-air conditions yield losses may be even greater than the large losses already reported in earlier chamber studies. Yield losses with elevated ozone were greater in the second year following a severe hailstorm, suggesting that losses caused by ozone might be exacerbated by extreme climatic events.     

Social environment and genetics underlie body site‐specific microbiomes of Yellowstone National Park gray wolves (Canis lupus)

The host‐associated microbiome is an important player in the ecology and evolution of species. Despite growing interest in the medical, veterinary, and conservation communities, there remain numerous questions about the primary factors underlying microbiota, particularly in wildlife. We bridged this knowledge gap by leveraging microbial, genetic, and observational data collected in a wild, pedigreed population of gray wolves (Canis lupus) inhabiting Yellowstone National Park. We characterized body site‐specific microbes across six haired and mucosal body sites (and two fecal samples) using 16S rRNA amplicon sequencing. At the phylum level, we found that the microbiome of gray wolves primarily consists of Actinobacteria, Bacteroidetes, Firmicutes, Fusobacteria, and Proteobacteria, consistent with previous studies within Mammalia and Canidae. At the genus level, we documented body site‐specific microbiota with functions relevant to microenvironment and local physiological processes. We additionally employed observational and RAD sequencing data to examine genetic, demographic, and environmental correlates of skin and gut microbiota. We surveyed individuals across several levels of pedigree relationships, generations, and social groups, and found that social environment (i.e., pack) and genetic relatedness were two primary factors associated with microbial community composition to differing degrees between body sites. We additionally reported body condition and coat color as secondary factors underlying gut and skin microbiomes, respectively. We concluded that gray wolf microbiota resemble similar host species, differ between body sites, and are shaped by numerous endogenous and exogenous factors. These results provide baseline information for this long‐term study population and yield important insights into the evolutionary history, ecology, and conservation of wild wolves and their associated microbes.     

Rapid,in situ detection of Agrobacterium tumefaciens attachment to leaf tissue

Attachment of the plant pathogen Agrobacterium tumefaciens to host plant cells is an early and necessary step in plant transformation and agroinfiltration processes. However, bacterial attachment behavior is not well understood in complex plant tissues. Here we developed an imaging‐based method to observe and quantify A. tumefaciens attached to leaf tissue in situ. Fluorescent labeling of bacteria with nucleic acid, protein, and vital dyes was investigated as a rapid alternative to generating recombinant strains expressing fluorescent proteins. Syto 16 green fluorescent nucleic acid stain was found to yield the greatest signal intensity in stained bacteria without affecting viability or infectivity. Stained bacteria retained the stain and were detectable over 72 h. To demonstrate in situ detection of attached bacteria, confocal fluorescent microscopy was used to image A. tumefaciens in sections of lettuce leaf tissue following vacuum‐infiltration with labeled bacteria. Bacterial signals were associated with plant cell surfaces, suggesting detection of bacteria attached to plant cells. Bacterial attachment to specific leaf tissues was in agreement with known leaf tissue competencies for transformation with Agrobacterium. Levels of bacteria attached to leaf cells were quantified over time post‐infiltration. Signals from stained bacteria were stable over the first 24 h following infiltration but decreased in intensity as bacteria multiplied in planta. Nucleic acid staining of A. tumefaciens followed by confocal microscopy of infected leaf tissue offers a rapid, in situ method for evaluating attachment of A. tumefaciens' to plant expression hosts and a tool to facilitate management of transient expression processes via agroinfiltration. © 2012 American Institute of Chemical Engineers Biotechnol. Prog., 2012