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81.
82.
《Fungal Ecology》2022
The factors shaping the composition of microbial communities in trees remain poorly understood. We evaluated whether the core and satellite fungal communities in five pine species (Pinus radiata, Pinus pinaster, Pinus sylvestris, Pinus nigra, and Pinus uncinata) were shaped by the host species identity. Because the trees had earlier been inoculated with a fungal pathogen (Fusarium circinatum), we also explored the possibilities to detect its presence and potential co-occurrence networks. We found interspecific variation in the fungal community composition and abundance among the different tree species and the existence of a core microbiome that was independent of the host species. The presence of F. circinatum was confirmed in some samples through qPCR but the pathogen did not co-occur with a specific fungal community. The results highlight the importance of host species as a determinant of microbiome assembly in common environments. 相似文献
83.
Amornmas Kongklieng Worasak Kaewkong Pewpan M. Intapan Oranuch Sanpool Penchom Janwan Tongjit Thanchomnang Viraphong Lulitanond Pusadee Sri-Aroon Yanin Limpanont Wanchai Maleewong 《The Korean journal of parasitology》2013,51(6):651-656
Human schistosomiasis caused by Schistosoma japonicum and Schistosoma mekongi is a chronic and debilitating helminthic disease still prevalent in several countries of Asia. Due to morphological similarities of cercariae and eggs of these 2 species, microscopic differentiation is difficult. High resolution melting (HRM) real-time PCR is developed as an alternative tool for the detection and differentiation of these 2 species. A primer pair was designed for targeting the 18S ribosomal RNA gene to generate PCR products of 156 base pairs for both species. The melting points of S. japonicum and S. mekongi PCR products were 84.5±0.07℃ and 85.7±0.07℃, respectively. The method permits amplification from a single cercaria or an egg. The HRM real-time PCR is a rapid and simple tool for differentiation of S. japonicum and S. mekongi in the intermediate and final hosts. 相似文献
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Cheng‐Hong Yang Yu‐Huei Cheng Li‐Yeh Chuang Hsueh‐Wei Chang 《Biotechnology progress》2009,25(3):745-753
To provide feasible primer sets for performing a polymerase chain reaction (PCR) experiment, many primer design methods have been proposed. However, the majority of these methods require a relatively long time to obtain an optimal solution since large quantities of template DNA need to be analyzed. Furthermore, the designed primer sets usually do not provide a specific PCR product size. In recent years, evolutionary computation has been applied to PCR primer design and yielded promising results. In this article, a memetic algorithm (MA) is proposed to solve primer design problems associated with providing a specific product size for PCR experiments. The MA is compared with a genetic algorithm (GA) using an accuracy formula to estimate the quality of the primer design and test the running time. Overall, 50 accession nucleotide sequences were sampled for the comparison of the accuracy of the GA and MA for primer design. Five hundred runs of the GA and MA primer design were performed with PCR product lengths of 150–300 bps and 500–800 bps, and two different methods of calculating Tm for each accession nucleotide sequence were tested. A comparison of the accuracy results for the GA and MA primer design showed that the MA primer design yielded better results than the GA primer design. The results further indicate that the proposed method finds optimal or near‐optimal primer sets and effective PCR products in a dry dock experiment. Related materials are available online at http://bio.kuas.edu.tw/ma‐pd/ . © 2009 American Institute of Chemical Engineers Biotechnol. Prog., 2009 相似文献
86.
AIM: To assess the extent of Listeria monocytogenes in causation of human spontaneous abortions by isolation methods and PCR analysis for the presence of virulence-associated genes. METHODS AND RESULTS: A total of 305 samples comprising blood, urine, placental bits, faecal and vaginal swabs were collected from 61 patients with spontaneous abortions. Listeria spp. were isolated from 10 samples collected from nine (14.8%) patients. Confirmation of these isolates was based on biochemical tests, haemolysis on blood agar, CAMP test, phosphatidylinositol-specific phospholipase C (PI-PLC) assay followed by in vivo pathogenicity tests and multiplex PCR to detect virulence-associated genes (prfA, plcA, hlyA, actA and iap). Three isolates were confirmed as L. monocytogenes. Of these, two isolates turned out to be pathogenic and found to posses all five genes. However, the remaining two haemolytic L. monocytogenes isolates lacking the plcA gene and activity in the PI-PLC assay were found to be nonpathogenic by in vivo tests. CONCLUSIONS: The occurrence of pathogenic L. monocytogenes in cases of spontaneous abortions was 3.3%. It seems that the plcA gene and its expression have an important role as essential virulence determinants in pathogenic Listeria spp. SIGNIFICANCE AND IMPACT OF THE STUDY: The recovery of pathogenic L. monocytogenes isolates from cases of spontaneous abortion indicates the significance of listeric infection in pregnant women. 相似文献
87.
设计在不同pH水平(4.3、5.1、5.8、6.8)下两种VA菌根真菌Glomus mosseae和Gigaspora margarita对紫云英Astragalus sinicus进行单接种、混合接种及无接种对照的盆栽实验。对紫云英地上和地下部分生物量、根部侵染率、SDH和ALP酶活进行了检测。实验结果表明:紫云英的生长效应与VA菌根真菌的侵染率及两种酶活成明显相关性。土壤pH升高,单接种Glomus mosseae和混合接种的侵染率也随之升高,而单接种Gigaspora margarita的侵染率呈现 相似文献
88.
89.
Sequence-tagged-site (STS) markers of arbitrary genes: the utility of black spruce-derived STS primers in other conifers 总被引:4,自引:0,他引:4
D. J. Perry J. Bousquet 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》1998,97(5-6):735-743
Sequence-tagged-site primers, previously developed based upon black spruce (Picea mariana) cDNA sequences, were tested for their ability to direct specific amplification in two individuals of each of 12 additional
conifer species. Nearly all (95–97%) of the primers functioned well in congeneric trials, while a lower proportion (21–33%)
scored positively in other Pinaceae genera. Outside of the Pinaceae, amplification of homologous products was not achieved.
Products from the various species often differed in size from their homologs in black spruce. In one case a large difference
in size was due to the lack of an intron in a jack pine product while in several other cases the differences were due to the
presence or absence of large direct repeats in the DNA sequences. Length polymorphism was occasionally evident between the
two individuals examined of a given species. We investigated marker polymorphism in detail in a panel of 15 white spruce (Picea glauca) trees. Allelic segregation among haploid megagametophytes was revealed directly at 16 loci by standard agarose-gel electrophoresis
without any additional manipulation of amplification products. Polymorphisms observed at 12 of these loci were exclusively
co-dominant. For this subset of 12 loci, the average number of alleles was 3.2 and the average observed heterozygosity was
0.37.
Received: 10 April 1998 / Accepted: 22 April 1998 相似文献
90.