A knowledge-based three dimensional model of the Photosystem II reaction center of Chlamydomonas reinhardtii

In this Minireview, a comparison of the binding niches of the PS II cofactors from several existing models of the PS II reaction center is provided. In particular, it discusses a three dimensional model of the Photosystem II (PS II) reaction center including D1, D2 and cytochrome b559 proteins from the green alga Chlamydomonas reinhardtii that was specifically generated for this Minireview. This model is the most complete to date and includes accessory chlorophyll_zs, a manganese cluster, two molecules of -carotene and cytochrome b559, all of which are essential components of the PS II reaction center. The modeling of the D1 and D2 proteins was primarily based on homology with the L and M subunits of the anoxygenic purple bacterial photosynthetic reaction centers. The non-homologous loop regions were built using a sequence specific approach by searching for the best-matched protein segments in the Protein Data Bank, and by imposing the matching conformations on the corresponding D1 and D2 regions. Cytochrome b559 which is in close proximity to D1 and D2 was tentatively modeled in / conformation and docked on the Q_B side of the PS II reaction center according to experimental suggestions. An alternate docking on the Q_A side is also shown for comparison. The cofactors in the PS II reaction center were modeled either by adopting the structures from the bacterial counterparts, when available, with modifications based on existing experimental data or by de novo modeling and docking in the most probable positions in the reaction center complex. The specific features of this model are the inclusion of the tetramanganese cluster (with calcium and chloride ions) in a open, C-shaped structure modeled within the D1/D2/cytochrome b559 complex with D1-D170, D1-E189, D1-D342 and D1-A344 as putative ligands; and the modeling of two cis -carotenes and two accessory chlorophyll_zs liganded by D1-H118 and D2-H117. We also analyzed residues in the model which may be involved in the D1 and D2 inter-protein interactions, as well as residues which may be involved in putative bicarbonate and water binding and transport.     

The fucoxanthin-chlorophyll proteins from a chromophyte alga are part of a large multigene family: structural and evolutionary relationships to other light harvesting antennae

 A fucoxanthin-chlorophyll protein (FCP) cDNA from the raphidophyte Heterosigma carterae encodes a 210-amino acid polypeptide that has similarity to other FCPs and to the chlorophyll a/b-binding proteins (CABs) of terrestrial plants and green algae. The putative transit sequence has characteristics that resemble a signal sequence. The Heterosigma fcp genes are part of a large multigene family which includes members encoding at least two significantly different polypeptides (Fcp1, Fcp2). Comparison of the FCP sequences to the recently determined three-dimensional structure of the pea LHC II complex indicates that many of the key amino acids thought to participate in the binding of chlorophyll and the formation of complex-stabilizing ionic interactions are well conserved. Phylogenetic analyses of sequences of light-harvesting proteins shows that the FCPs of several chromophyte phyla form a natural group separate from the intrinisic peridinin-chlorophyll proteins (iPCPs) of the dinoflagellates. Although the FCP and CAB genes shared a common ancestor, these lineages diverged from each other prior to the separation of the CAB LHC I and LHC II sequences in the green algae and terrestrial plants. Received: 8 July 1996 / Accepted: 21 August 1996     

Effects of changes in growth temperature on photosynthesis and carotenoid composition in Zea mays leaves

The effects of changes in growth temperature on photosynthesis and carotenoid composition were examined in Zea mays L. leaves of different age and different developmental history. The plants were first grown at sub-optimal temperature (14°C) until the full development of the third leaf. At that time, the mature third leaf and the immature fourth leaf had a low chlorophyll (Chl) content, a low Chl a/b ratio, a high carotenoid/Chl a+b ratio, a high xanthophyll/β-carotene ratio, and about 80% of the xanthophyll cycle pool (violaxanthin [V] + antheraxanthin [A] + zeaxanthin [Z]) was in the form of zeaxanthin and antheraxanthin. When the temperature was increased from 14°C to 24°C for three days, increased Chl synthesis, accompanied by an increase in the Chl a/b ratio, took place. The ratios of lutein, neoxanthin, and V+A+Z to Chl a+b decreased markedly, whereas no significant changes appeared in the β-carotene/Chl a+b ratio. Furthermore, there was a sharp decrease in the xanthophyll/β-carotene ratio and most of zeaxanthin was converted to violaxanthin in the xanthophyll cycle. The third leaf and the tip segment of the fourth leaf, both expanded at 14°C, showed little difference in their pigment contents. However, the rate of CO₂ assimilation of the tip segment of the fourth leaf was nearly twice that of the third leaf on the third day at 24°C, while the photosynthetic activity was similar in both leaves before the transfer to 24°C. During the warm period at 24°C, new leaf tissue (basal segment of the fourth leaf and part of a fifth leaf) was formed. On the third day at 24°C, the pigment content of 24°C-grown leaf tissue did not differ much from that of 14°C-grown leaf tissue with the exception that the total carotenoid content was lower in the former as compared to the latter, mainly because of a lower V+A+Z content. The rate of CO₂ assimilation of 24°C-grown leaf tissue was comparable to that of the tip segment of the fourth leaf. Regardless of which leaf tissue is considered, reducing the temperature from 24°C to 14°C for 5 days slightly affected the pigment content, but violaxanthin was largely converted to zeaxanthin and antheraxanthin in the xanthophyll cycle. The results indicate that compared to old leaf tissue of mature leaves, physiologically younger leaf tissue of immature leaves is much more able to recover from depressions in the photosynthetic activity induced by growth at sub-optimal temperature when the plants experience optimal growth temperatures, but that factors other than the pigment content must determine this capability.     

Cryptomonad biliproteins: Bilin types and locations

Two crytophycean phycocyanins (Cr-PCs), Hemiselmis strain HP9001 Cr-PC 612 and Falcomonas daucoides Cr-PC 69 were purified and characterized with respect to bilin numbers, types and locations. Each biliprotein carried one bilin on the subunit and three on the subunit. Cr-PC 612 carried phycocyanobilin at -Cys-18, -Cys-82, and -Cys-158, and a doubly-linked 15,16-dihydrobiliverdin at -DiCys-50,61. Cr-PC 569 carried phycocyanobilin at -Cys-18 and -Cys-82, a singly-linked Bilin 584 at -Cys-158, and a doubly-linked Bilin 584 at -DiCys-50,61. This work, in conjunction with earlier studies on Cr-PE 545, Cr-PE 555, Cr-PE 566, and Cr-PC 645, shows that there is no conserved location for the bilin with longest wavelength visible absorption band among these proteins, and, consequently, that there is no conserved energy transfer pathway common to all native cryptophycean biliproteins. Only phycocyanobilin or phycoerythrobilin is found at -Cys-82; there is greater bilin variability at the other three attachment sites.Abbreviations Cr-PC cryptophycean phycocyanin - Cr-PE cryptophycean phycoerythrin - DBV 15,16-dihydrobiliverdin - MBV mesobiliverdin - PCB phycocyanobilin - PEB phycoerythrobilin - HPLC high performance liquid chromatography - TFA trifluoroacetic acid     

绿盲蝽八个普通气味受体基因的克隆及功能鉴定

【目的】本研究旨在克隆绿盲蝽Apolygus lucorum的气味受体基因,明确这些气味受体基因在绿盲蝽成虫不同组织中的表达水平及对主要寄主植物挥发物的电生理反应,为揭示绿盲蝽对寄主植物的识别机制提供理论基础。【方法】在绿盲蝽成虫触角转录组测序与分析的基础上,通过PCR技术克隆得到8个具有完整ORF的气味受体基因序列。用qPCR研究这8个基因在雌雄成虫不同组织(触角、无触角的头、胸、腹、足和翅)中的表达水平。然后通过爪蟾卵母细胞体外表达结合双电极电压钳技术测试这些气味受体对56种气味化合物的电生理反应。【结果】克隆得到了绿盲蝽8个气味受体基因AlucOR9, AlucOR16,AlucOR38, AlucOR53, AlucOR55, AlucOR56, AlucOR57和AlucOR58的cDNA全长序列(GenBank登录号:MN905538-MN905545)。这些气味受体含有7个跨膜结构域,且N末端位于胞内,C末端位于胞外,符合昆虫气味受体的典型特征。qPCR结果表明,这8个气味受体基因均在绿盲蝽成虫触角中高表达,而在其他组织中低表达,其中除AlucOR38外的其他7个气味受体基因在雌雄成虫触角间存在显著的表达差异。双电极电压钳记录结果显示,AlucOR57对其中15种气味化合物(苯甲醛、氧化石竹烯、庚醛、反-2-己烯醛、乙酸苯甲酯、桃金娘烯醛、4-乙基苯甲醛、乙酸壬酯、四氢芳樟醇、十三烷、反-3-己烯醇、2-丙烯酸丁酯、丙酸丁酯、乙酸辛酯和乙酸戊酯)有反应,其余7个气味受体对测试的全部气味化合物均无反应。【结论】AlucOR57对测试的一些气味化合物有反应,推测其在绿盲蝽的寄主识别过程中发挥重要作用;其他7个气味受体对测试气味化合物均无反应,其功能有待进一步研究。     

Pigment characterisation of suspended matter in association with particulate heavy metal loadings in the German Bight and Elbe Estuary

The pigment fingerprints, determined by HPLC, of suspended matter from different areas of the German Bight and from the Elbe Estuary are presented. These include areas with suspended matter concentrations varying between 10 mg l^–1 in the deeper waters in the middle of the Bight and 150 mg l^–1 in the Elbe mouth. Pigment data allows the identification of three groups of suspended matter (marine, turbidity zone and Elbe) for the numerous different locations. The changes in pigment concentrations in the suspended matter over tidal cycles are considered. The presence of pigments and pigment breakdown productsi.e. lutein and chlorophyllides is used to assess the possible condition of the phytoplankton present in the suspended matter. These pigment characteristics are compared with the loading of the heavy metals cadmium, copper, manganese, iron, zinc and lead in the particulate matter. It has been demonstrated that the pigments of the planktonic material can be used very effectively to identify different types of suspended matter and that the heavy metal loadings of the suspended matter were significantly correlated with chlorophyll-a.     

SEPARATION OF CHLOROPHYLLS c1c2, AND c3 OF MARINE PHYTOPLANKTON BY REVERSED-PHASE-C18-HIGH-PERFORMANCE LIQUID CHROMATOGRAPHY1

We separated chlorophylls c₁ c₂, and c₃ of marine phytoplankton together with other pigments by a modification of the commonly applied reversed-phase-C18-high-performance liquid chromatography (RP-C18-HPLC) method. However, the chlorophyll c-like pigment 2,4, Mg-divinylpheoporphyrin as monomethyl ester, co-eluted with chlorophyll c₁. The method involves optimization of the mobile phase by using a very high ion strength solvent in combination with a high carbon loaded RP-C18 column. Fingerprints of the various taxonomic groups of algae can thus be developed in a single run, including separation of the carotenoids lutein and zeaxanthin.     

Antennal sensilla of the ground beetle Bembidion lampros Hbst (Coleoptera, Carabidae)

Antennal sensilla typology, number and distribution pattern were studied in the ground beetle Bembidion lampros Hbst (Coleoptera, Carabidae) using scanning electron microscopy. The 1.6–1.8 mm long filiform antennae of both sexes consist of the scape, pedicel and of the flagellum composed of nine flagellomeres. In both sexes, three types of sensilla chaetica, two types of sensilla trichodea, five types of sensilla basiconica, one type of sensilla coeloconica, one type of sensilla campaniformia and Böhm sensilla were distinguished. The possible function of the sensilla was discussed and three types of sensilla were considered as olfactory, sensilla trichodea type 2 and sensilla basiconica types 1 and 2. Olfactory sensilla occupy dorsal and/or ventral areas of the flagellomeres and occur sparsely (sensilla basiconica type 1) or not at all (sensilla basiconica type 2 and sensilla trichodea type 2) outside these areas. No remarkable sexual differences in the types, numbers and distribution of antennal sensilla were found.     

Effects of rare earth elements on growth rate,lipids, fatty acids and pigments in microalgae

The extensive exploitation of rare earth elements (REEs), particularly in electronic technologies and agriculture has concomitantly raised the environmental load. Their resulting effects on primary producers such as microalgae are, however, poorly understood. We have studied these effects on two microalgae of biotechnological interest. The yellow‐green alga Trachydiscus minutus (Eustigmatophyceae, Ochrophyta), and the green alga Parachlorella kessleri (Trebouxiophyceae, Chlorophyta) were cultivated in mineral medium supplemented with 10 μmol L^?1 chlorides of REEs: cerium, gadolinium, lanthanum, lutetium, praseodymium, scandium, and with monazite, which is a mineral rich in those elements. We observed growth rates at different mean light intensities (20, 50, 150 and 300 μmol m^?2 s^?1). The high growth rate of P. kessleri was not affected by the presence of any lanthanide, and decreased proportionally with light intensity (from 0.2 to 0.04 doublings per hour). In contrast, the growth rate of T. minutus was about three times lower compared with P. kessleri, with an optimum at 50 μmol m^?2 s^?1 and decreased at higher or lower light intensities. In the presence of Ce³⁺, La³⁺ and Sc³⁺, the growth rate markedly increased to a value that corresponded to the growth rate in P. kessleri at the same light intensity. The composition and content of pigments and lipids were followed at the optimum light intensity for both species. The lipid content (percentage of dry weight) varied only slightly in the presence of individual rare earths. There was, however, an increase in saturated fatty acids at the expense of polyunsaturated fatty acids. The effect of REEs on pigments was variable: the presence of Ce³⁺, Gd³⁺, La³⁺ and Sc³⁺ caused an increase in the concentrations of major pigments such as lutein, violaxanthin, β‐carotene or chlorophylls, while Pr³⁺ and Lu³⁺ reduced them.