Development of an expert system for the integration of biomarker responses in mussels into an animal health index

Biomarkers on sentinel organisms are utilised worldwide in biomonitoring programs. However, the lack of effective interpretational capacity has hampered their uptake for use for assessment of risk in environmental management. The aim of the present study was to develop and test an objective decision-support or expert system capable of integrating biomarker results into a five-level health-status index. The expert system is based on a set of rules derived from available data on responses to natural and contaminant-induced stress of marine mussels. Integration of parameters includes: level of biological organization; biological significance; mutual inter-relationship; and qualitative trends in a stress gradient. The system was tested on a set of biomarker data obtained from the field and subsequently validated with data from previous studies. The results demonstrate that the expert system can effectively quantify the biological effects of different levels of pollution. The system represents a simple tool for risk assessment of the harmful impact of contaminants by providing a clear indication of the degree of stress syndrome induced by pollutants in mussels.     

Evaluating the effectiveness of conservation site networks under climate change: accounting for uncertainty

We forecasted potential impacts of climate change on the ability of a network of key sites for bird conservation (Important Bird Areas; IBAs) to provide suitable climate for 370 bird species of current conservation concern in two Asian biodiversity hotspots: the Eastern Himalaya and Lower Mekong. Comparable studies have largely not accounted for uncertainty, which may lead to inappropriate conclusions. We quantified the contribution of four sources of variation (choice of general circulation models, emission scenarios and species distribution modelling methods and variation in species distribution data) to uncertainty in forecasts and tested if our projections were robust to these uncertainties. Declines in the availability of suitable climate within the IBA network by 2100 were forecast as ‘extremely likely’ for 45% of species, whereas increases were projected for only 2%. Thus, we predict almost 24 times as many ‘losers’ as ‘winners’. However, for no species was suitable climate ‘extremely likely’ to be completely lost from the network. Considerable turnover (median = 43%, 95% CI = 35–69%) in species compositions of most IBAs were projected by 2100. Climatic conditions in 47% of IBAs were projected as ‘extremely likely’ to become suitable for fewer priority species. However, no IBA was forecast to become suitable for more species. Variation among General Circulation Models and Species Distribution Models contributed most to uncertainty among forecasts. This uncertainty precluded firm conclusions for 53% of species and IBAs because 95% confidence intervals included projections of no change. Considering this uncertainty, however, allows robust recommendations concerning the remaining species and IBAs. Overall, while the IBA network will continue to sustain bird conservation, climate change will modify which species each site will be suitable for. Thus, adaptive management of the network, including modified site conservation strategies and facilitating species' movement among sites, is critical to ensure effective future conservation.     

Rehabilitation of former Snowy Scheme sites in Kosciuszko National Park

Ten years of restoration work at 200 sites within Kosciuszko National Park – sites damaged during the construction of Australia's most iconic hydroelectric scheme – is showing substantial progress and is contributing to the protection of the park's internationally significant ecosystems.     

The case for environmental flow determination for the Phongolo River,South Africa

The construction of Pongolapoort Dam in 1973 on the Phongolo River in KwaZulu-Natal, South Africa, has considerably altered the hydrological behaviour and ecological response of the downstream floodplain. Changes in the flooding regime have had implications for the socio-economic importance of the floodplain and for the structure and functioning of its associated wetlands. Previous studies have recommended annual releases of water from the dam to sustain floodplain ecosystem goods and services. The current artificial water releases are limited by the size of the dam's sluices and by the demand for water from the local community. Therefore, water releases do not always follow the original natural flooding regime. To date, the influence of the changed hydrology on the ecology of the Phongolo floodplain system remains poorly known. As a basis for future integrated interdisciplinary research we synthesised the ecological and hydrological work conducted to date on the Phongolo floodplain. We suggest hydro-ecology as an important research direction needed to set environmental flows for the sustainable utilisation and management of the floodplain. Understanding the hydrological behaviour and ecological response of the Phongolo floodplain could help in the implementation of environmental flows by managers at the Department of Water and Sanitation and other stakeholders such as Ezemvelo KZN Wildlife.     

AN HOLISTIC APPROACH TO THE MANAGEMENT OF WATER QUALITY IN FALSE BAY,CAPE TOWN,SOUTH AFRICA

Summary

An overview of the water quality status of False Bay identified the bacterial/viral water quality of stormwater and rivers discharging near contact recreation beaches to be the management concern of highest priority. A second water quality concern is the potential impact of nutrients being discharged into False Bay on the surf zone and bay ecosystems. Heavy metals, hydrocarbons and industrial chemical discharges into the Bay are not regarded as a serious water quality threat. Much of the future development planned for Metropolitan Cape Town will impact on the volume and water quality of rivers, groundwater, stormwater and wastewater flowing into False Bay; hence the need for an integrated catchment management approach to the management of the bay.

An assessment of the constraints facing the holistic management of the bay and catchment concludes that the four main concerns are: (1) a lack of key research information on the options for stormwater management, and on the loading and potential impacts of nutrients being discharged into the surf zone and bay ecosystems; (2) jurisdictional fragmentation, and the lack of coordinated policy and planning between different local and government authorities and other users; (3) legislative fragmentation; and (4) a lack of private sector and public consultation by authorities. Preliminary ideas on the structure of a management body for False Bay and its catchment which address the concerns listed above are presented.     

乳腺肿瘤组织标本库与数据库的建立及信息化管理

目的:随着基础和临床研究的深入开展,拥有完整基因信息的组织标本成为了肿瘤研究工作的基础.建立电子信息化管理的乳腺肿瘤组织标本库和数据库,为临床和科研收集、保存和管理标本资源.方法:标准化收集手术切除的乳腺肿瘤组织、正常腺体组织,以及患者血液标本,预处理后保存于-80℃冰箱中.每3个月从标本库中随机抽取5例标本,提取标本的总RNA,琼脂糖凝胶电泳验证总RNA质量;运用免疫组织化学法(Immunohistochemistry,IHC)检测标本中人表皮生长因子-2(Human epidermal growth factor receptor,HER-2 or c-erbB-2)和Ki67的表达,并与术后免疫组化结果进行比较.同时利用Epidata软件管理乳腺肿瘤组织标本库.结果:收集恶性肿瘤507例,良性肿瘤212例,血液标本9347份,并建立了一套高效的信息化管理系统.总RNA电泳结果显示28 S和18S亚基条带清晰明亮,5S条带很弱,表明标本中的RNA质量较高,无降解.免疫组化结果显示标本中的HER-2和Ki67的表达与术后免疫组化结果情况吻合,存储的标本质量良好.结论:建立的实验标本收集、储存流程是有效可行的,收集的标本质量是可靠的,管理方法是高效实用的,为乳腺肿瘤基础和临床研究提供质量可靠的标本来源,可为乳腺肿瘤研究提供良好的服务平台.     

Length–weight and length-length relationship of eight marine fish species from Northeastern Brazilian coast

Length-weight relationships (LWR) and length-length relationships (LLR) were provided for eight species inhabiting Northeastern Brazilian coast. Nine transects (5, 15, 30 m deep) between Sergipe and Vaza-Barris rivers mouths were sampled monthly from September 2013 to August 2014. Each sampling was carried out using a shrimp boat equipped with double ring nets (4 m mouth wide, 10 m long and 20 mm mesh size) and trawlings were performed for 15 min. Fishes were measured (standard and total length, 0.1 cm) and weighted (total weight, 0.01 g). We provide LWR and LLR coefficients for these eight species, including new maximum TL for five species, and discuss the similarity of these results with estimates available in Fishbase.     

Wetland Waterbird Food Resources Increased by Harvesting Invasive Cattails

The conservation of many freshwater marsh waterbirds (i.e., waterfowl, shorebirds, wading birds, and secretive marshbirds) in the Laurentian Great Lakes requires managing invasive emergent macrophytes, which degrade waterbird habitat by creating dense, litter-clogged stands, and excluding plants that produce nutritionally balanced and high-energy food (seeds, tubers, and submerged aquatic vegetation). The most commonly used management approach in the United States Great Lakes region involves the application of herbicides, which can stimulate waterbird forage plants but does not address the accumulation of plant litter, the underlying cause of plant community diversity loss and habitat degradation. We experimentally evaluated the effects of an alternative approach, harvesting invasive plants and their litter followed by flooding, on plant communities, focusing on the effects of these treatments to increase the abundance of high-energy wetland plants. At the Shiawassee National Wildlife Refuge in Michigan, USA, we experimentally treated an invasive cattail (Typha × glauca)-dominated wetland in August and September of 2016, 2017, and 2018, using a randomized block design with 4 blocks and 3 treatments (sediment surface harvest, above ground harvest, and control). We monitored the effects of these treatments on the abundance and dominance of waterbird forage-producing plants, plant diversity, and plant communities prior to (Jul 2016) and during the summer following each treatment (late Jul or early Aug 2017, 2018, and 2019). Additionally, we used pre- and post-treatment waterbird use-day data collected at the unit scale and compared values with satellite imagery-derived land cover changes. Compared to control plots, 3 years of harvesting and flooding significantly increased plant species diversity, increased the abundance of waterbird seed- and tuber-producing plant species by 5 times, and increased annual plant dominance by more than 10 times, while substantially reducing all measures of cattail and its litter. Use-days increased for total waterbirds, including waterfowl and dabbling ducks, following treatment. Cattail cover decreased and open water and non-cattail emergent vegetation cover increased. Harvesting invasive plant biomass coupled with flooding promoted a plant community composition and structure beneficial to waterbirds. © 2020 The Wildlife Society.     

Gopher Tortoise Demographic Responses to a Novel Disturbance Regime

The long-term viability of gopher tortoise (Gopherus polyphemus) populations is jeopardized by increased urbanization and habitat degradation owing to fire suppression. Because the species' remaining natural habitats in the southeastern United States exist within a mosaic of anthropogenic land uses, it is important to understand demographic responses to contrasting land uses and habitat management regimes. We examined differences in demographic parameters among fire-suppressed sandhill, restored sandhill, and former sandhill (i.e., ruderal) land use-land cover (LULC) types at Archbold Biological Station in south-central Florida, USA. Using Program MARK, we estimated population size, and sex-specific and LULC-specific survivorship based on 6 years of mark-recapture data. We also analyzed individual growth trajectories and clutch sizes to determine whether growth rates or reproductive output differed among LULC types. Tortoises in an open, ruderal field occurred at a higher density (7.79/ha) than in adjacent restored (1.43/ha) or fire-suppressed (0.40/ha) sandhill. Despite this higher density, both adult survivorship and body size were significantly higher in the ruderal field. Furthermore, the larger female body size in the ruderal field likely contributed to increased annual survivorship and slightly larger average clutch sizes. We did not detect offsetting negative demographic effects; in particular, we did not find significant biological or statistical differences in body condition, asymptotic body size, or growth rate among the 3 LULC types. Our results suggest that anthropogenic, grass-dominated land-cover types may be important components of the habitat mosaic currently available to this at-risk species. © 2019 The Wildlife Society.     

Sex-based differences in vigor and site preferences of Juniperus communis subsp. nana

Dioecious alpine juniper has been influenced by human impacts, management and climate changes; hence, its present populations are remnant fragments of its former distribution in central Europe. Complex environmental shifts have had fatal consequences for growth, reproduction and health of juniper and hence for its population structure. We asked the questions: 1) what was the population size structure, the sex ratio and the health status of individuals? 2) How were the population parameters linked with the environmental conditions and surrounding vegetation? The study area was close and above the upper forest limit in central Europe, the Hrubý Jeseník Mts. The parameters of each juniper individual and its environmental conditions were obtained, Ellenberg's indicator values and habitat categories were also determined. Proportions of sex categories, shrub size and environmental conditions were investigated to assess relationships between the population categories and environmental factors. We revealed linkage among the shrub size, health vigor, vegetation cover, a habitat and environmental factors. While there was equal ratio of females and males (1:1), small individuals of undetermined sex predominated that reducing the effective population size. Juniper health vigor was associated with surrounding vegetation cover. Individuals of undetermined sex were smaller than those of remaining sex categories and prefer specific habitats at higher elevation, underlining the effect of abiotic conditions on sex performance and ratio. The observed pattern, which was attributed to shift in land-use practices in the middle of 20th century and climate changes, could be improved by management. We recommended experimental local grazing and mowing accompanying by profound and continuing assessment of interaction among environmental factors and juniper performance.