Host Plant Specialization and Species Turnover of Caterpillars Among Hosts in the Brazilian Cerrado

Decrease in the species composition similarity of herbivore assemblages with increasing phylogenetic distance between host plants is a widespread pattern. Here we used data for caterpillars in the Brazilian Cerrado to investigate how the similarity in caterpillar species composition decreases as the taxonomic level and genetic distance (GD) of their host plants increases. In addition, we elucidate the plant taxonomic level that provides the greatest contribution to turnover in the caterpillar species composition among host taxa. Adult Lepidoptera were reared from caterpillars collected from 52 plants over 13 yr in the same area, with each host plant sampled for 1 yr. Most species were specialists, with 66 percent of genus specialists among the nonsingleton species. The similarity in caterpillar species composition across plant taxa decreased from host species to genera, and from host genera to orders. Above this level, the similarity was consistently low. The GD between plants explained 82 percent of the variation in the similarity of caterpillar species composition. The contribution of caterpillar species turnover among host orders from the same superorder and among host superorders from the same subclass explained 70 percent of the caterpillar species richness as a whole. Our results lend support to the view that most tropical caterpillars are host specialists. Our findings further indicate that the number of orders and superorders of plants provide the greatest contribution to the total caterpillar richness compared with all of the other host taxonomic levels combined. Abstract in Portuguese is available at http://www.blackwell‐synergy.com/loi/btp .     

Modelling roach (Rutilus rutilus) microhabitat using linear and nonlinear techniques

• 1 Multiple linear regression (MLR), generalised additive models (GAM) and artificial neural networks (ANN), were used to define young of the year (0+) roach (Rutilus rutilus) microhabitat and to predict its abundance.
• 2 0+ Roach and nine environmental variables were sampled using point abundance sampling by electrofishing in the littoral area of Lake Pareloup (France) during summer 1997. Eight of these variables were used to set up the models after log₁₀ (x+ 1) transformation of the dependent variable (0+ roach density). Model training and testing were performed on independent subsets of the whole data matrix containing 306 records.
• 3 The predictive quality of the models was estimated using the determination coefficient between observed and estimated values of roach densities. The best models were provided by ANN, with a correlation coefficient (r) of 0.83 in the training procedure and 0.62 in the testing procedure. GAM and MLR gave lower prediction in the training set (r = 0.53 for GAM and r = 0.32 for MLR) and in the testing set (r = 0.48 for GAM and r = 0.43 for MLR). In the same way, samples without fish were reliably predicted by ANN whereas GAM and MLR predicted absence unreliably.
• 4 ANN sensitivity analysis of the eight environmental variables in the models revealed that 0+ roach distribution was mainly influenced by five variables: depth, distance from the bank, local slope of the bottom and percentage of mud and flooded vegetation cover. The nonlinear influence of these variables on 0+ roach distribution was clearly shown using nonparametric lowess smoothing procedures.
• 5 Non‐linear modelling methods, such as GAM and ANN, were able to define 0+ fish microhabitat precisely and to provide insight into 0+ roach distribution and abundance in the littoral zone of a large reservoir. The results showed that in lakes, 0+ roach microhabitat is influenced by a complex combination of several environmental variables acting mainly in a nonlinear way.

     

Effects of toxic and non-toxic cyanobacteria on the life history of tropical and temperate cladocerans

1. This study compares the effects of four toxic strains of Microcystis aeruginosa on tropical and temperate Cladocera. Survival was tested in acute toxicity experiments using Microcystis alone or in mixtures with the edible green algae Ankistrodesmus falcatus. The effect of chronic exposure on population growth was estimated in life‐table experiments by varying the proportion of Microcystis and the green alga. Nutritional deficiency was assessed using a non‐toxic cyanobacterium in a zooplankton growth experiment. Feeding inhibition was tested using a C‐labelled green alga as a tracer in mixtures with toxic Microcystis.
2. Toxicity varied consistently between Microcystis strains, while sensitivity varied consistently between cladoceran species. However, no relationship was found between sensitivity and geographical origin or cladoceran body size. Two small‐bodied cladocerans from the same tropical lake, Ceriodaphnia cornuta and Moinodaphnia macleayi, were the least sensitive and most sensitive species, respectively.
3. Surprisingly, two small tropical cladocerans survived longer without food than did three large Daphnia species and a third small tropical species.
4. Each of the three tropical Microcystis strains strongly reduced the population growth rate (little ‘r’) and reproductive output of each cladoceran, this reduction being proportional to the percentage of toxic cells in the diet.
5. As the sole food source, the non‐toxic cyanobacterium, Synechococcus elongatus, supported poor growth in M. macleayi. The nutritional deficiency was overcome when Synechococcus was mixed with either Ankistrodesmus or an emulsion rich in omega‐3 fatty acids.
6. Microcystis inhibited the feeding rate of two cladocerans, even when it comprised only 5% of a mixture with the green algae A. falcatus.
7. Differences in sensitivity to the toxic cyanobacterium appear to be associated with differences in life history between the cladoceran species rather than differences between tropical and temperate taxa. Slow‐growing species that are resistant to starvation appear less sensitive to toxic Microcystis than fast‐growing species, which also tend to die more quickly in the absence of food.     

NMR experiments for resonance assignments of 13C, 15N doubly-labeled flexible polypeptides: Application to the human prion protein hPrP(23–230)

A combination of three heteronuclear three-dimensional NMR experiments tailored for sequential resonance assignments in uniformly ¹⁵N, ¹³C-labeled flexible polypeptide chains is described. The 3D (H)N(CO-TOCSY)NH, 3D (H)CA(CO-TOCSY)NH and 3D (H)CBCA(CO-TOCSY)NH schemes make use of the favorable ¹⁵N chemical shift dispersion in unfolded polypeptides, exploit the slow transverse ¹⁵N relaxation rates of unfolded polypeptides in high resolution constant-time [¹H, ¹⁵N]-correlation experiments, and use carbonyl carbon homonuclear isotropic mixing to transfer magnetization sequentially along the amino acid sequence. Practical applications are demonstrated with the 100-residue flexible tail of the recombinant human prion protein, making use of spectral resolution up to 0.6 Hz in the ¹⁵N dimension, simultaneous correlation with the two adjacent amino acid residues to overcome problems associated with spectral overlap, and the potential of the presently described experiments to establish nearest-neighbor correlations across proline residues in the amino acid sequence.     

Improved high-throughput sunflower and cotton genomic DNA extraction and PCR fidelity

The extraction of high-quality genomic DNA for PCR amplification from sunflower (Helianthus annuus) and cotton (Gossypium spp.) is challenging because of the presence of polysaccharides, secondary metabolites, and polyphenolics in the tissues. A high-throughput DNA extraction protocol was needed in our laboratory for simple sequence repeats (SSR)-marker screening and other molecular analyses that do not require organic extraction steps of phenol or chloroform. Here we describe 2 improved highthroughput protocols for DNA extraction and in-PCR modification that result in successful PCR amplification of sunflower and cotton. While the sunflower DNA extraction protocol uses reducing agents such as sodium metabisulfite and dithiothreitol (DTT), the cotton protocol uses polyvinylpyrrolidone (PVP) in PCR reactions and reducing agents in the DNA extraction procedure.     

Scanning Electron Microscopy of Pine Seedling Wood Tissue Sections Inoculated with the Pinewood Nematode Bursaphelenchus xylophilus Previously Prepared for Light Microscopy

Scanning electron microscopy (SEM) was applied to paraffin-embedded wood sections to study the histopathology of pine seedlings inoculated with the pinewood nematode (PWN), Bursaphelenchus xylophilus. The sections, which had been previously prepared and observed by light microscopy (LM) on glass slides, were originally obtained from experiments in which pine seedlings had been inoculated with PWN. The cover glass was removed by soaking the glass slide in xylene for 3 to 5 days. The glass slides were cut into small pieces so that each piece contained one wood section. Each piece of the glass slide was attached with double adhesive tape to an aluminum stub. The specimens were sputter-coated with gold and examined with a scanning electron microscope (JEOL-JSM 5200). Compared to LM (as documented in previous reports) SEM provided greater depth of focus and resolution of the damaged wood tissues, nematodes and associated bacteria. SEM made it possible to observe the relationship between bacterial distribution and nematode distribution in wood tissues. SEM observations also suggested the possibility of documenting the death of ray cells and other parenchyma cells in relation to disease development. Finally, the current study of PWN in pine seedlings demonstrated that glass slides prepared for LM observations more than 25 years earlier could be successfully processed for examination by SEM.     

Improvement of seed yields under boron-limiting conditions through overexpression of BOR1, a boron transporter for xylem loading, in Arabidopsis thaliana

Soil fertilization is a common practice in modern agriculture, undertaken to prevent nutrient deficiency in crops. However, fertilization is costly and causes environmental pollution. The cultivation of plants that tolerate low nutrient supplies may circumvent this problem. Here, we report the generation of Arabidopsis thaliana plants that tolerate boron (B)-deficient conditions due to the overexpression of BOR1, an efflux B transporter that is required for efficient xylem loading of B. In several independently generated transgenic plants expressing BOR1 or BOR1-GFP under the control of the cauliflower mosaic virus 35S RNA promoter, root-to-shoot translocation of B was enhanced and shoot growth was greater under B-limiting conditions compared with wild-type plants. In addition, the transgenic plants showed increased translocation of B, especially to the shoot apex, and set seed normally under B-limiting conditions, under which wild-type plants failed to set seed. This study therefore reports plants that show improved seed yields compared with wild-type under nutrient-deficient conditions as a result of increased production of an essential mineral nutrient transporter.     

Eutrophication and its control by biomanipulation: an enclosure experiment

Biomanipulation experiments were carried out in small enclosures in a small, shallow eutrophic lake in eastern England. The effects of fish removal on water quality and planktonic communities were examined in relation to nutrients and macrophytes. Exclusion of fish resulted in enhanced densities of the large-bodied Daphnia hyalina which, in turn, led to improvements in water quality. The provision of refuges from fish predation also enhanced Daphnia populations enough to suggest this strategy as feasible for the restoration of this lake. The development of a mysid population in enclosures without fish indicated that some indirect effects might occur if fish are completely removed.     

Molecular, morphological, and experimental evidence support the synonymy of Perkinsus chesapeaki and Perkinsus andrewsi

Diverse analytical and experimental results confirm that two protistan parasites, Perkinsus chesapeaki and Perkinsus andrewsi, described separately as parasites of Mya arenaria and Macoma balthica clams sympatric in Chesapeake Bay, USA, represent a single species. Ribosomal RNA (rRNA) internal transcribed spacer (ITS) regions, rRNA large subunit (LSU) gene, and actin gene sequences were obtained from clonal Perkinsus spp. cultured in vitro. Although multiple polymorphic sequences were found in DNA from clonal cultures at each locus, identical ITS region and actin gene sequences were found in the P. andrewsi holotype culture and in Perkinsus sp. clonal cultures from M. arenaria and Tagelus plebius. All sequences determined from cultures of P. chesapeaki and P. andrewsi at each locus grouped together in monophyletic clades with high support values in phylogenetic analyses. In vitro isolates of Perkinsus spp. from M. arenaria and M. balthica were reciprocally infective for each other's cognate host. Lesions and histozoic parasite cell morphologies were consistent with those described for the original host/parasite interactions. In vitro isolate cell cycles and cell types of both parasites were indistinguishable. In accordance with the International Code of Zoological Nomenclature rules of priority, P. andrewsi is declared a junior synonym of P. chesapeaki.     

Cloning,characterization, and heterologous expression of a novel glucosyltransferase gene from sophorolipid-producing Candida bombicola

Candida bombicola is well-studied for the production of a biosurfactant, the sophorolipids. In this paper, the cloning of a glucosyltransferase gene using polymerase-chain-reaction (PCR) technique is described. Degenerative primer-pairs were first designed based on the highly conserved amino-acid sequences of several selected yeast glucosyltransferases. Using these primers, an amplified sequence (amplicon) of 700 base-pair from C. bombicola was obtained and subsequently sequenced. Based on the sequence of this amplicon, additional target-specific PCR primers were designed for use in subsequent rounds of 3′- and 5′-extension using DNA walking technique to eventually obtain a C. bombicola genomic sequence containing an open-reading-frame putatively identified as a glucosyltransferase (gtf-1). The gene was subcloned in Saccharomyces cerevisiae for expression and functional characterization. Quantitative RT-PCR confirmed the expression of gtf-1 in the recombinant S. cerevisiae. In vitro assay with the sonicated cells of the recombinant yeast confirms the presence of glucosylation activity on sterol and hydroxy fatty acid substrates. This study reports for the first time the cloning and characterization of a broad-specificity lipid glucosylation gene from C. bombicola, and the functional activity of its gene product.