Possible adaptive and non-adaptive radiation in three plant genera in the Japanese archipelago

The adaptive radiation of flowering plants as manifested by the floral diversity has long been considered associated with the diversity of plant–pollinator interactions, because changes in plant–pollinator interactions are hypothesized as one of the major mechanisms driving plant ecological speciation. To understand the relative contributions of various mechanisms for plant radiation, including pollinator changes, it is useful to study a plant group for which comparative study of the species life history across the whole lineage is feasible. To this end, we will focus on the plant lineages that have presumably radiated in the Japanese archipelago, namely, the genera Asimitellaria, Asarum, and Arisaema. By comparing these three genera, we will comment on the possible modes of adaptive radiation and diversification among the endemic flora of Japan.     

The speciation view: Disentangling multiple causes of adaptive and non-adaptive radiation in terms of speciation

Biological diversification often includes burst of lineage splitting. Such “radiation” has been known to act as evolutionary arenas with the potential to generate unique phylogenetic clusters and further novel groups. Although these radiations when accompanied by ecological diversification, so-called “adaptive radiation” have persisted as a central premise in evolutionary biology, the ecological and genetic mechanism of such rapid diversification has remained unclear. There are several critical definitions for the pattern of adaptive radiation, and those provide delimitation of adaptive and non-adaptive radiation. That being said, only a few studies have provided any clear demarcations in our understanding of the adaptive and non-adaptive causes of radiation from the mechanism of speciation. Here, we review the current consensus for the causes of adaptive radiation, especially along with the recent theoretical synthesis of “ecological speciation.” Further, we suggest the signature of adaptive and non-adaptive radiation in the earliest stages of diversification from the viewpoint of speciation. These criteria from the speciation view are useful to find the cases with the signatures of adaptive/non-adaptive radiation.     

High-fidelity representation of climate variations by Amburana cearensis tree-ring chronologies across a tropical forest transition in South America

Numerous ring-width chronologies from different species have recently been developed in diverse tropical forests across South America. However, the temporal and spatial climate signals in these tropical chronologies is less well known. In this work, annual growth rings of Amburana cearensis, a widely distributed tropical tree species, were employed to estimate temporal and spatial patterns of climate variability in the transition from the dry Chiquitano (16–17°S) to the humid Guarayos-southern Amazon (14–15°S) forests. Four well-replicated chronologies (16–21 trees, 22–28 radii) of A. cearensis were compared with temperature and precipitation records available in the region. The interannual variations in all four A. cearensis tree-ring chronologies are positively correlated with precipitation and negatively with temperature during the late dry-early wet season, the classic moisture response seen widely in trees from dry tropical and temperate forests worldwide. However, the chronologies from the dry Chiquitano forests of southern Bolivia reflect the regional reduction in precipitation during recent decades, while the chronologies from the tropical lowland moist forests in the north capture the recent increase in precipitation in the southern Amazon basin. These results indicate that A. cearensis tree growth is not only sensitive to the moisture balance of the growing season, it can also record subtle differences in regional precipitation trends across the dry to humid forest transition. Comparisons with previously developed Centrolobium microchaete chronologies in the region reveal a substantial common signal between chronologies in similar environments, suggesting that regional differences in climate are a major drivers of tree growth along the precipitation gradient. The difficulty of finding A. cearensis trees over 150-years old is the main limitation involved in the paleoclimate application of this species. The expansion of monocultures and intensive cattle ranching in the South American tropics are contributing to the loss of these old growth A. cearensis trees and the valuable records of climate variability and climate change that they contain.     

Surfing on the seascape: Adaptation in a changing environment

The environment changes constantly at various time scales and, in order to survive, species need to keep adapting. Whether these species succeed in avoiding extinction is a major evolutionary question. Using a multilocus evolutionary model of a mutation‐limited population adapting under strong selection, we investigate the effects of the frequency of environmental fluctuations on adaptation. Our results rely on an “adaptive‐walk” approximation and use mathematical methods from evolutionary computation theory to investigate the interplay between fluctuation frequency, the similarity of environments, and the number of loci contributing to adaptation. First, we assume a linear additive fitness function, but later generalize our results to include several types of epistasis. We show that frequent environmental changes prevent populations from reaching a fitness peak, but they may also prevent the large fitness loss that occurs after a single environmental change. Thus, the population can survive, although not thrive, in a wide range of conditions. Furthermore, we show that in a frequently changing environment, the similarity of threats that a population faces affects the level of adaptation that it is able to achieve. We check and supplement our analytical results with simulations.     

Demographic History and Natural Selection Shape Patterns of Deleterious Mutation Load and Barriers to Introgression across Populus Genome

Hybridization and resulting introgression are important processes shaping the tree of life and appear to be far more common than previously thought. However, how the genome evolution was shaped by various genetic and evolutionary forces after hybridization remains unresolved. Here we used whole-genome resequencing data of 227 individuals from multiple widespread Populus species to characterize their contemporary patterns of hybridization and to quantify genomic signatures of past introgression. We observe a high frequency of contemporary hybridization and confirm that multiple previously ambiguous species are in fact F₁ hybrids. Seven species were identified, which experienced different demographic histories that resulted in strikingly varied efficacy of selection and burdens of deleterious mutations. Frequent past introgression has been found to be a pervasive feature throughout the speciation of these Populus species. The retained introgressed regions, more generally, tend to contain reduced genetic load and to be located in regions of high recombination. We also find that in pairs of species with substantial differences in effective population size, introgressed regions are inferred to have undergone selective sweeps at greater than expected frequencies in the species with lower effective population size, suggesting that introgression likely have higher potential to provide beneficial variation for species with small populations. Our results, therefore, illustrate that demography and recombination have interplayed with both positive and negative selection in determining the genomic evolution after hybridization.     

Immune competence and spleen size scale with colony status in the naked mole-rat

Naked mole-rats (NM-R; Heterocephalus glaber) live in multi-generational colonies with a social hierarchy, and show low cancer incidence and long life-spans. Here we asked if an immune component might underlie such extreme physiology. The largest lymphoid organ is the spleen, which plays an essential role in responding to immunological insults and may participate in combating cancer and slowing ageing. We investigated the anatomy, molecular composition and function of the NM-R spleen using RNA-sequencing and histological analysis in healthy NM-Rs. Spleen size in healthy NM-Rs showed considerable inter-individual variability, with some animals displaying enlarged spleens. In all healthy NM-Rs, the spleen is a major site of adult haematopoiesis under normal physiological conditions. However, myeloid-to-lymphoid cell ratio is increased and splenic marginal zone showed markedly altered morphology when compared to other rodents. Healthy NM-Rs with enlarged spleens showed potentially better anti-microbial profiles and were much more likely to have a high rank within the colony. We propose that the anatomical plasticity of the spleen might be regulated by social interaction and gives immunological advantage to increase the lifespan of higher-ranked animals.     

Response of Audouinella saviana (Meneghini) Woelkerling (Nemaliales,Rhodophyta) cultures to monochromatic light

Audouinella saviana (Meneghini) Woelkerling was cultured at a constant temperature (24 °C) and different irradiances (from 1 µmol to 30 µmol photons m^–2 s^–1) of blue (430–470 nm) and green (500–560 nm) light in order to study its adaptive response. Modifications in colour, morphology and ultrastructure of the thalli, together with changes in pigment composition and in the spectral properties of chlorophyll a and R-phycoerythrin, were observed both by means of light and electron microscopy (TEM, SEM) and spectrophotometric and spectrofluorimetric analyses. In this paper we report the adaptive response of the seaweed to blue and green radiation by focussing on the cell wall and on the photosynthetic apparatus, particularly on phycobilisomes in situ and on R-PE after extraction. PBSs were fully structured only under blue light at low irradiance whilst they were absent under green light, whatever the irradiance, in spite of the high R-PE content. This fact, together with the spectral changes of R-PE, suggests adaptation at a molecular level, presumably referable to changes in aggregation state.     

植物与植食性昆虫相互作用的分子机制

在长期的协同进化中,植物建立起应对昆虫取食为害的精密而又复杂的防御机制,植物转录组调控中防御应答基因的表达及防御物质的合成因不同的昆虫取食方式而异。一般来说,咀嚼式口器昆虫取食时造成大面积组织伤害,可诱导植物产生伤害反应;而刺吸式口器昆虫因其特殊的口针取食,诱导植物激活病原体相关的防御途径。不同的防御途径激活不同的识别机制和信号途径。本文从信号识别和转导上综述了不同食性的昆虫取食植物时所引发的防御反应,分析了昆虫-植物相互作用关系的分子机制。