Adaptation of methane formation and enzyme contents during growth of Methanobacterium thermoautotrophicum (strain ΔH) in a fed-batch fermentor

During growth of Methanobacterium thermoautotrophicum in a fed-batch fermentor, the cells are confronted with a steady decrease in the concentration of the hydrogen energy supply. In order to investigate how the organism responds to these changes, cells collected during different growth phases were examined for their methanogenic properties. Cellular levels of the various methanogenic isoenzymes and functionally equivalent enzymes were also determined. Cells were found to maintain the rates of methanogenesis by lowering their affinity for hydrogen: the apparent K _m ^H2 decreased in going from the exponential to the stationary phase. Simultaneously, the maximal specific methane production rate changed. Levels of H₂-dependent methenyl-tetrahydromethanopterin dehydrogenase (H₂-MDH) and methyl coenzyme M reductase isoenzyme II (MCR II) decreased upon entry of the stationary phase. Cells grown under conditions that favored MCR II expression had higher levels of MCR II and H₂-MDH, whereas in cells grown under conditions favoring MCR I, levels of MCR II were much lower and the cells had an increased affinity for hydrogen throughout the growth cycle. The use of thiosulfate as a medium reductant was found to have a negative effect on levels of MCR II and H₂-MDH. From these results it was concluded that M. thermoautotrophicum responds to variations in hydrogen availability and other environmental conditions (pH, growth temperature, medium reductant) by altering its physiology. The adaptation includes, among others, the differential expression of the MDH and MCR isoenzymes.     

获取有机物厌氧降解产甲烷过程中关键功能类群——互营细菌培养物

互营代谢是微生物之间的重要种间互作关系之一,参与互营代谢的微生物广泛存在于土壤、淡水和海水沉积物、厌氧消化反应器、动物肠道和极端环境中(如地下油藏),在有机物厌氧降解转化为二氧化碳和甲烷的过程中发挥着关键性的作用。研究互营细菌的物质代谢和能量传递的分子机制,对认识缺氧环境中的元素生物地球化学循环具有重要意义,也为解决全球能源危机、缓解气候变暖提供理论指导。但是,互营细菌生长缓慢、对氧气敏感,其分离培养的难度大。本文主要回顾了互营细菌的分离策略及其生理生化特征,展望了互营细菌分离培养的发展趋势,并指出以高通量筛选与定向分离相结合的方法,获得具有特定生理生态学功能的互营细菌,是互营微生物资源和分类学研究的发展方向。     

Decomposition of carbon-bearing compounds and their influence on methane formation in a lignite incubation experiment

Carbon-bearing compounds (glucose, sodium acetate, methanol, yeast extract, and nutrient broth) were added in different proportions to cultures to stimulate methanogenesis in a lignite incubation experiment. Their addition significantly influenced the isotopic composition of methane generated during the fermentation of lignite. Glucose was degraded mainly in the first 2 weeks of incubation, when the atmospheric air was present in the headspace and used for biomass growth. Sodium acetate, methanol, and, presumably, lignite were decomposed in the next phase, in which anaerobic conditions occurred. The simultaneous decomposition of sodium acetate and methanol (as single substrates or as a mixture) with lignite resulted in the formation of methane with δ¹³C(CH₄) values typical for methyl-type fermentation. The identification of decomposed compounds in the mixture of sodium acetate and methanol was accomplished via isotopic analysis of carbon and hydrogen in the methane. The δ²H(CH₄) values in the case of methanol biodegradation were characterized by a negative trend over time, in contrast to a positive trend observed when sodium acetate decomposed. This observation may help to identify a very good tracer for the determination of methane precursors during methyl-type fermentation.     

Influence of pH on the balance between methanogenesis and iron reduction

Methanogenesis and iron reduction play major roles in determining global fluxes of greenhouse gases. Despite their importance, environmental factors that influence their interactions are poorly known. Here, we present evidence that pH significantly influences the balance between each reaction in anoxic environments that contain ferric (oxyhydr)oxide minerals. In sediment bioreactors that contained goethite as a source of ferric iron, both iron reduction and methanogenesis occurred but the balance between them varied significantly with pH. Compared to bioreactors receiving acidic media (pH 6), electron donor oxidation was 85% lower for iron reduction and 61% higher for methanogenesis in bioreactors receiving alkaline media (pH 7.5). Thus, methanogenesis displaced iron reduction considerably at alkaline pH. Geochemistry data collected from U.S. aquifers demonstrate that a similar pattern also exists on a broad spatial scale in natural settings. In contrast, in bioreactors that were not augmented with goethite, clay minerals served as the source of ferric iron and the balance between each reaction did not vary significantly with pH. We therefore conclude that pH can regulate the relative contributions of microbial iron reduction and methanogenesis to carbon fluxes from terrestrial environments. We further propose that the availability of ferric (oxyhydr)oxide minerals influences the extent to which the balance between each reaction is sensitive to pH. The results of this study advance our understanding of environmental controls on microbial methane generation and provide a basis for using pH and the occurrence of ferric minerals to refine predictions of greenhouse gas fluxes.     

Dynamics of reductive TCE dechlorination in two distinct H<Subscript>2</Subscript> supply scenarios and at various temperatures

Anaerobic microbial dechlorination of trichloroethene (TCE) by a mixed, Dehalococcoides containing culture was investigated at different temperatures (4–60 °C) using propionate and lactate as a slow- and fast-releasing hydrogen (H₂) source, respectively. Distinct temperature-dependent dynamics of substrate fermentation and H₂ levels could explain observed patterns of dechlorination. While varying the temperature caused changes in rate, the overall pattern of dechlorination was characteristic of the supplied electron donor. Feeding cultures with a rapidly fermentable substrate such as lactate generally resulted in high H₂ concentrations and fast and complete dechlorination accompanied by rapid methanogenesis. In contrast, low H₂ release rates resulting from fermentation of propionate were associated with 2 to 3−fold longer time frames necessary for complete dechlorination at intermediate temperatures (15–30 °C). A lag-phase prior to dechlorination of cis-dichloroethene (cDCE), together with a characteristic build-up of H₂ and methane, was consistently observed at slow H₂ supply. At temperatures of 10 °C and lower, the system remained in this lag phase and no dechlorination past cDCE was observed within the experimental time frame. However, when lactate was the substrate, complete dechlorination of TCE occurred within 74 days at 10 °C, accompanied by methane production. The choice of fermentable substrate decisively influenced the rate and degree of dechlorination at an electron donor/TCE ratio as high as 666:1. Temperature-dependent H₂ levels resulting from fermentation of different substrates could be satisfactorily explained through thermodynamic calculations of the Gibbs free energy yield assuming a constant metabolic energy threshold of −20 kJ/(mol reaction).     

Thermodynamic analysis of growth of Methanobacterium thermoautotrophicum

Growth of Methanobacterium thermoautotrophicum, an anaerobic archaebacterium using methanogenesis as the catabolic pathway, is characterized by large heat production rates, up to 13 W g⁻¹, and low biomass yields, in the order of 0.02 C‐mol mol⁻¹ H₂ consumed. These values, indicating a possibly “inefficient” growth mechanism, warrant a thermodynamic analysis to obtain a better understanding of the growth process. The growth‐associated heat production (Δ_rH) and the growth‐associated Gibbs energy dissipation per mol biomass formed (Δ_rG) were −3730 kJ C‐mol⁻¹ and −802 kJ C‐mol⁻¹, respectively. The Gibbs energy change found in this study is indeed unusually high as compared to aerobic methylotrophes, but not untypical for methanogens grown on CO₂. It explains the low biomass yield. Based on the information available on the energetic metabolism and on an ATP balance, the biomass yield can be predicted to be approximately in the range of the experimentally determined value. The fact that the exothermicity exceeds vastly even the Gibbs energy change can be explained by a dramatic entropy decrease of the catabolic reaction. Microbial growth characterized by entropy reduction and correspondingly by unusually large heat production may be called entropy‐retarded growth. © 1999 John Wiley & Sons, Inc. Biotechnol Bioeng 64: 74–81, 1999.     

Anaerobic treatment of sulphate-containing waste streams

Sulphate-containing wastewaters from the paper and board industry, molasses-based fermentation industries and edible oil refineries present difficulties during anaerobic treatment, leading to problems of toxicity, reduction in methane yield, odour and corrosion. The microbiology and biochemistry of dissimilatory sulphate reduction are reviewed in order to illustrate the potential competition between sulphate reducers and other anaerobes involved in the sequential anaerobic mineralisation process. The theoretical considerations which influence the outcome of competition between sulphate reducers and fermentative, syntrophic, homoacetogenic and methanogenic bacteria are discussed. The actual outcome, under the varying influent organic composition and strength and sulfate concentrations which prevail during digestion of industrial wastewaters, may be quite different to that predicted by thermodynamic or kinetic considerations. The factors governing competitive interactions between SRB and other anaerobes involved in methanogenesis is discussed in the context of literature data on sulphate wastewater treatment and with particular reference to laboratory and full-scale digestion of citric acid production wastewater.     

2-bromoethanesulfonate (BES) Enhances Sulfate-reducing Bacterial Population and Dichlorodiphenyltrichloroethane (DDT) Dechlorination in an Anaerobic Paddy Soil

2-bromoethanesulfonate (BES) is a structural analogue of 2-mercaptoethanesulfonic acid (coenzyme M) and often used to specifically inhibit methanogenesis. The role of BES and sulfate on the reductive dechlorination of dichlorodiphenyltrichloroethane (DDT) was compared in an anaerobic soil slurry reactor of sulfate-reducing system in this study. The population of soil sulfate-reducing bacteria (SRB) was markedly decreased under DDT condition compared to DDT-free reactor, while greatly increased by sulfate and slightly increased by BES. However, the dechlorination rate of DDT was the highest in the DDT+BES treatment, followed in order by DDT+Sulfate and the control condition. In the DDT+BES treatment, more than 60% of DDT-Cl was cleaved within 16 weeks, which was about 124% and 369% greater than that in the DDT+Sulfate treatment and under the control condition, respectively. The results suggested that the inhibition of methanogenesis by BES was another pathway to improve sulfate-reducing activity and the related dechlorination rate of DDT in waterlogged soils.     

Diversity of the Formyltetrahydrofolate Synthetase Gene (fhs), a Key Enzyme for Reductive Acetogenesis,in the Bovine Rumen

A clone library of the partial formyltetrahydrofolate synthetase gene (fhs), a key enzyme in reductive acetogenesis, was constructed from the DNA of bovine rumen contents. Diverse sequences were recovered, the majority of which were clustered with the fhs of authentic acetogens. Low similarity values to known fhs were observed in all sequences, suggesting the presence of unknown acetogens.