Evaluating the performance of multiple remote sensing indices to predict the spatial variability of ecosystem structure and functioning in Patagonian steppes

Assessing the spatial variability of ecosystem structure and functioning is an important step towards developing monitoring systems to detect changes in ecosystem attributes that could be linked to desertification processes in drylands. Methods based on ground-collected soil and plant indicators are being increasingly used for this aim, but they have limitations regarding the extent of the area that can be measured using them. Approaches based on remote sensing data can successfully assess large areas, but it is largely unknown how the different indices that can be derived from such data relate to ground-based indicators of ecosystem health. We tested whether we can predict ecosystem structure and functioning, as measured with a field methodology based on indicators of ecosystem functioning (the landscape function analysis, LFA), over a large area using spectral vegetation indices (VIs), and evaluated which VIs are the best predictors of these ecosystem attributes. For doing this, we assessed the relationship between vegetation attributes (cover and species richness), LFA indices (stability, infiltration and nutrient cycling) and nine VIs obtained from satellite images of the MODIS sensor in 194 sites located across the Patagonian steppe. We found that NDVI was the VI best predictor of ecosystem attributes. This VI showed a significant positive linear relationship with both vegetation basal cover (R² = 0.39) and plant species richness (R² = 0.31). NDVI was also significantly and linearly related to the infiltration and nutrient cycling indices (R² = 0.36 and 0.49, respectively), but the relationship with the stability index was weak (R² = 0.13). Our results indicate that VIs obtained from MODIS, and NDVI in particular, are a suitable tool for estimate the spatial variability of functional and structural ecosystem attributes in the Patagonian steppe at the regional scale.     

A large-scale inventory of liana diversity in tropical forests of South Eastern Ghats,India

Among the plant life-forms, lianas, the wood climbers still remain less studied than trees. The forests of Eastern Ghats of India are also relatively under studied compared with the Western Ghats biodiversity hotspot. We conducted a large-scale, landscape-level investigation of liana diversity in six hill complexes of the South Eastern Ghats, which covers 4297 km². We divided the study area into 6.25 km × 6.25 km grids and within each grid a 0.5 ha (5 m × 1000 m) transect was established and all lianas ≥1.5 cm diameter at breast height (dbh) were inventoried in 110 transects totalling a 55-ha area. Liana diversity totalled 143 species in 83 genera and 37 families in the 55 ha sampled. Of these 20 species (28.6%) were endemic to peninsular India and 7 (10%) species belonged to the rare and endangered category. Liana species richness ranged from 8–35 species and density 95–544 individuals per transect. A total of 32 033 liana individuals were enumerated in the 55 ha and the mean abundance was 291 individuals per transect. Across sites, liana abundance varied significantly, but not species richness and basal area. Asclepiadaceae (13 species, 9%) and Apocynaceae (11 species, 8%) constituted the most diverse liana families, followed by Papilionaceae, Vitaceae (10 each, 7%), Convolvulaceae, Mimosaceae, Oleaceae (8 each, 6%), Capparaceae, Rhamnaceae (7 each, 5%) and Menispermaceae (5 species, 3%). In liana stem size distribution, the lowest diameter class (1.5–3 cm dbh) accounted for greatest species richness (137 species, 96%), abundance (27 358 individuals, 85%) and basal area (13.5 m², 36%). The stem twiners were the predominant climber type in terms of species richness (61 species, 42.65%), whereas the armed scramblers were abundant due to stem density (21 571 individuals, 67.34%). The dispersal modes of lianas, assessed by fruit types, revealed zoochory as the prevalent mode (85 species, 59%) indicating the faunal dependence of lianas in the Eastern Ghats landscape. Liana diversity of the Eastern Ghats was compared with inventories made across the tropics. With these baseline data generated on lianas, the importance of biodiversity conservation of the already fragmented South Eastern Ghats region is underlined and potential areas of further research on liana ecology are suggested.     

Age- and gender-related oxidative status determined in healthy subjects by means of OXY-SCORE,a potential new comprehensive index

Oxidative stress has been related to various diseases, gender and ageing, and has been measured by various markers. The authors developed a procedure to compute a global oxidative stress index (OXY-SCORE), reflecting both oxidative and antioxidant markers in healthy subjects. Its performance was tested in relation to age and gender and in coronary artery disease (CAD) patients. Eighty-two healthy subjects and 20 CAD patients were enrolled. Plasma free and total malondialdehyde (F- and T-MDA), glutathione disulphide/reduced form ratio (GSSG/GSH) and urine isoprostanes (iPF_2α-III) levels were combined as oxidative damage markers (damage score). GSH, α- and γ-tocopherol (TH) levels, and individual antioxidant capacity were combined as antioxidant defence indexes (protection score). The OXY-SCORE was computed by subtracting the protection score from the damage score. Among single parameters, T-MDA and iPF_2α-III significantly correlated with age; only GSH and both tocopherols correlated with male gender in healthy subjects. The OXY-SCORE was positively associated with age (p=0.004) and male gender (p=0.03). As expected, the OXY-SCORE was higher in CAD with a very significant p-value (<0.0001), after adjusting for age, gender and smoking. Combining different markers can potentially provide a powerful index in the evaluation of oxidative stress related to age, gender and CAD status.     

Diversity and community structure of bats (Chiroptera) in the Centre Region of Cameroon

In this survey, we investigated the diversity and community structure of bats in the Centre Region of Cameroon with respect to their distribution in the different vegetation zones of the region. We mist-netted bats monthly from January 2016 to June 2017 for five nonconsecutive nights per month. Thirty-nine sites were surveyed: 24 in traditional farms, nine in the savannah and six in the forests. A total of 668 bats were captured during 81 nights of capture, covering seven families, 21 genera and 36 species. This included 26 species in traditional farms, 13 species in savannah and 11 species in the forest. Micropteropus pusillus was the most abundant species (30.7%) recorded, followed by Hipposideros ruber (24.9%). The sample efficiency was estimated at 72.1% with fitted species accumulation curves not reaching asymptotes for the three habitat types, suggesting that the survey did not record all the bats present. There was an indication of general increased in abundance of bats during the dry and rainy seasons but it is not significant (Mann–Whitney U: 783.5, p = .195). The rarity index was highest in traditional farms (0.44), followed by savannah (0.38) and then forest (0.33). This preliminary survey provides baseline data on the distribution of bats in the different vegetation types in the Centre Region of Cameroon.     

Residency and abundance of sperm whales (Physeter macrocephalus) in Nemuro Strait,Hokkaido, Japan

We examined the trend in residence patterns and abundance of male sperm whales in Nemuro Strait, Japan, based on long-term photo-identification (1,513 survey days, total 2,969 photos) between 2006 and 2017. A total of 225 unique individuals were identified during this study, with an average of 36 (SE = 2.55) new individuals identified in each season. The model chosen by maximum likelihood suggests that residence time around Nemuro Strait is 769 (SE = 372.4) days, with individuals staying in the strait about 48 days (SE = 8.36) per year. While the migration patterns of male sperm whales visiting this area are still unclear, these findings along with previous studies suggest that males move from one breeding area to another neighboring area every several weeks, shifting their home ranges gradually over a period of a few years. The abundance of sperm whales in Nemuro Strait varied greatly from year to year; from 28 (95%CI: 24–44) in 2015 and (95%CI: 22–48) in 2016 to 66 (95%CI: 57–84) in 2011. This study provides important knowledge of abundance and residency for Nemuro Strait, information which will contribute to further research on the social structure and movement pattern of male sperm whales.     

The incidence of turnip yellows virus in oilseed rape crops (Brassica napus L.) in three different regions of England over three consecutive growing seasons and the relationship with the abundance of flying Myzus persicae

Turnip yellows virus (TuYV) is the most important virus infecting oilseed rape in the United Kingdom. The incidence and spatial distribution of TuYV in winter oilseed rape (WOSR) crops in three regions of England were determined over three growing seasons. Leaf samples were collected from three fields in each region, in autumn (November–December) and spring (April) of the three crop seasons and tested for virus presence by enzyme-linked immunosorbent assay. Infection was detected in all fields except one. Higher TuYV incidences were recorded in 2007–2008 (≤89%) and 2009–2010 (≤100%) crop seasons than in 2008–2009 (≤24%). Highest incidences were recorded in Lincolnshire (≤100%), followed by Warwickshire (≤88%), with lowest incidences in Yorkshire (1–74%). There was a significant increase in incidence detected between autumn and spring sampling in eight fields, a significant decrease in one field and no significant change in 18 fields. Rothamsted Insect Survey suction trap data for the aphid Myzus persicae in Lincolnshire, Warwickshire and Yorkshire revealed two peaks of flight activity in most years (2007–2009). The second peak (September–November) coincided with emergence of WOSR. The highest cumulative (August–November) trap catches in the three regions during the three crop seasons occurred in Lincolnshire and the lowest in Yorkshire; catches in autumn 2009 were highest and lowest in autumn 2008. Regression analysis revealed a highly significant association between the cumulative numbers of M. persicae caught in the suction traps closest to the crops between August and November each year and the incidence of TuYV detected in the WOSR crops in the autumn of each year. Results are discussed in the light of factors affecting the spread of TuYV and future possibilities for control.     

Genetic mark-recapture analysis of winter faecal pellets allows estimation of population size in Sage Grouse Centrocercus urophasianus

The Sage Grouse Centrocercus urophasianus is a species of conservation concern throughout its range in western North America. Since the 1950s, the high count of males at leks has been used as an index for monitoring populations. However, the relationship between this lek-count index and population size is unclear, and its reliability for assessing population trends has been questioned. We used non-invasive genetic mark-recapture analysis of faecal and feather samples to estimate pre-breeding population size for the Parachute-Piceance-Roan, a small, geographically isolated population of Sage Grouse in western Colorado, during two consecutive winters from 2012 to 2014. We estimated total pre-breeding population size as 335 (95% confidence interval (CI): 287–382) in the first winter and 745 (95% CI: 627–864) in the second, an approximate doubling in abundance between years. Although we also observed a large increase in the spring lek-count index between those years, high male count data poorly represented mark-recapture estimates of male abundance in each year. Our data suggest that lek counts are useful for detecting the direction and magnitude of large changes in Sage Grouse abundance over time but they may not reliably reflect small changes in abundance that may be relevant to small populations of conservation concern.     

Field evaluation of abundance estimates under binomial and multinomial N-mixture models

Assessing and modelling abundance from animal count data is a very common task in ecology and management. Detection is arguably never perfect, but modern hierarchical models can incorporate detection probability and yield abundance estimates that are corrected for imperfect detection. Two variants of these models rely on counts of unmarked individuals, or territories (binomial N-mixture models, or binmix), and on detection histories based on territory-mapping data (multinomial N-mixture models or multimix). However, calibration studies which evaluate these two N-mixture model approaches are needed. We analysed conventional territory-mapping data (three surveys in 2014 and four in 2015) using both binmix and multimix models to estimate abundance for two common avian cavity-nesting forest species (Great Tit Parus major and Eurasian Blue Tit Cyanistes caeruleus). In the same study area, we used two benchmarks: occupancy data from a dense nestbox scheme and total number of detected territories. To investigate variance in estimates due to the territory assignment, three independent ornithologists conducted territory assignments. Nestbox occupancy yields a minimum number of territories, as some natural cavities may have been used, and binmix model estimates were generally higher than this benchmark. Estimates using the multimix model were slightly more precise than binmix model estimates. Depending on the person assigning the territories, the multimix model estimates became quite different, either overestimating or underestimating the ‘truth’. We conclude that N-mixture models estimated abundance reliably, even for our very small sample sizes. Territory-mapping counts depended on territory assignment and this carried over to estimates under the multimix model. This limitation has to be taken into account when abundance estimates are compared between sites or years. Whenever possible, accounting for such hidden heterogeneity in the raw data of bird surveys, via including a ‘territory editor’ factor, is recommended. Distributing the surveys randomly (in time and space) to editors may also alleviate this problem.     

A study of the abundance and patchiness of cicada nymphs (Homoptera: Tibicinidae) in a New Zealand subalpine shrub-grassland

Abstract

Cicada emergence skins in a subalpine shrub grassland have been sampled during 1969–75 to determine the abundance and spatial distributions of nymphs feeding on plant roots. A guild of six cicada species is primarily associated with two forms of vegetation: shrubs (Dracophyllum and Cassinia) and tall tussock (Chionochloa). Skin locations were mapped relative to dominant vegetation species, litter zones, and soil and rock pavements over a range of aspects, altitudes, and vegetation types, and sampling methods were scaled at four levels: the locality, plot, quadrat, and individual plant. There were significant differences in skin counts over four years, and different measures of mean skin densities are given for the four sampling scales. The two primary vegetation types had cumulative 1969–72 mean densities of 5.2 ± 4.0 and 12.9 ± 10.0 skins/quadrat (2.3 m²) , and the 1969–72 mean productivities of the upper 25% of quadrats (adjusted for percent ground cover) were, respectively, 5.5 and 35.5 skins/m². These productivities are believed to be conservative estimates of the maturing nymph numbers per individual host plant over the span of one cicada generation. Over a 17-year span, such productivities lie within the upper range of mean densities recorded for 17-year periodical cicadas in the United States. As the dominant subalpine vegetation species are very slow-growing,it is suggested that high densities of nymphs feeding on root sap may affect plant vitality, although 1971/1987 comparisons of vitality in 52 Chionochloa tussocks could not positively demonstrate a correlation across all data. Skin dispersion analyses indicated significant levels of patchiness, in agreement with other nymphal studies and with known cicada oviposition behaviour. No single dispersion model fitted the data comprehensively, and it is suggested that a gradual shifting of the centres of cicada aggregation may occur over a cumulative period of several generations.     

Abundance,feeding, and morphology of passerine birds at Kowhai Bush,Kaikoura, New Zealand

Abstract

Five-minute stationary counts of birds at Kowhai Bush over 17 months suggest that the scores for grey warblers and chaffinches may reflect vocal conspicuousness, rather than abundance, and that the scores for shining cuckoos, goldfinches, and redpolls may reflect vocal and visual conspicuousness in combination. Counts in three types of kanuka forest show that cuckoos, robins, and bellbirds favoured the more dense and diverse suocessional stages; that riflemen, brown creepers, fantails, chaffinches, goldfinches, and redpolls were most abundant in less mature habitats; and that warblers and silvereyes were almost uniformly common. Cuckoos and robins overlapped the most in use of habitat, robins and redpolls the least. For both warblers and robins, indices of abundance varied between two of the habitats in proportion to the densities of resident adults, permitting calibration of the indices. Excepting creepers and robins, native species were apparently less abundant at Kowhai Bush than in climax forest near Reefton. At Kowhai Bush in winter, creepers, warblers, and silvereyes (three of the four small native gleaners of foliage) collected prey almost entirely from kanuka, the dominant tree. Warblers foraged on 80% of occasions from living foliage, whereas creepers fed almost equally from trunks, branches, twigs, and leaves, and silvereyes concentrated on leaves and trunks. Creepers and silvereyes overlapped the most in use of feeding stations. Also, they were exclusively gleaners, whereas warblers caught prey on 40% of occasions by hovering. Warblers gleaned only in the upright position, but creepers and silvereyes often gleaned from vertical surfaces or by hanging upside down. The greatest overlap in feeding behaviour was between creepers and silvereyes. Data for four of the five small native insectivores show that warblers were half as heavy as creepers and silvereyes, and lighter on average than fantails. The tail was longer than the wing in fantails, shorter than the wing in silvereyes, and equal to the wing in warblers and creepers. The ratio of wing length to tarsometatarsus length was greatest for fantails (3.4), as befits an aerial feeder. Warblers, silvereyes, and fantails had bills that were wider than deep; the creeper’s was slightly deeper than wide. Silvereyes had the longest bill, and creepers the longest tarsometatarsus. Indices of morphological difference show that silvereyes and creepers differed least.