Elevational species richness patterns for vascular plants on Mount Kinabalu, Borneo

Aim  We quantify the elevational patterns of species richness for all vascular plants and some functional and taxonomic groups on a regional scale on a tropical mountain and discuss some possible causes for the observed patterns.
Location  Mount Kinabalu, Sabah, Borneo.
Methods  A data base containing elevational information on more than 28,000 specimens was analysed for vascular plant distribution, taking into account sampling effort. The total species richness pattern was estimated per 300-m elevational interval by rarefaction analyses. The same methods were also applied to quantify species richness patterns of trees, epiphytes, and ferns.
Results  Total species richness has a humped relationship with elevation, and a maximum species richness in the interval between 900 and 1200 m. For ferns and epiphytes the maximum species richness is found at slightly higher elevations, whereas tree species did not have a statistically significant peak in richness above the lowest interval analysed.
Main conclusions  For the first time a rigorous estimate of an elevational pattern in species richness of the whole vascular plant flora of a tropical mountain has been quantified. The pattern observed depends on the group studied. We discuss the differences between the groups and compare the results with previous studies of elevational patterns of species richness from other tropical areas. We also discuss the methods used to quantify the richness pattern and conclude that rarefaction gives an appropriate estimate of the species richness pattern.     

Historical biogeography and speciation in the Neotropical highlands: Molecular phylogenetics of the jay genus Cyanolyca

Phylogenetic relationships were studied in the genus Cyanolyca, an assemblage of jays distributed from Mexico south to Bolivia. Given its fragmented distribution along the humid forests of the Neotropics, the genus Cyanolyca is a model group for exploring hypotheses on biogeography and speciation. Phylogenetic analyses were based on two mitochondrial and three nuclear loci; taxon sampling includes all species in the genus and most subspecies. Maximum parsimony, maximum likelihood, and Bayesian analyses produced trees that were congruent and highly robust at both terminal and deep nodes of the phylogeny. Cyanolyca comprises two major clades: one contains the Mesoamerican “dwarf” jays, and the other consists of two main groups—C. cucullata + C. pulchra and the “core” South American species. Prior hypotheses of relationships were explored statistically using Maximum Likelihood and Bayesian approaches. Dispersal-Vicariance analysis revealed the importance of the Northern Andes as a major center for biological diversification, and the effects of dispersal across the Panamanian Land Bridge in the composition of South American and Mesoamerican avifaunas. Phylogenetic patterns are highly congruent with an allopatric mode of speciation. Implications of these results are discussed in the context of the biogeography of Neotropical montane forests.     

Current patterns of plant diversity and phylogenetic structure on the Kunlun Mountains

Large-scale patterns of biodiversity and the underlying mechanisms that regulate these patterns are central topics in biogeography and macroecology. The Qinghai-Tibet Plateau serves as a natural laboratory for studying these issues. However, most previous studies have focused on the entire Qinghai-Tibet Plateau, leaving independent physical geographic subunits in the region less well understood. We studied the current plant diversity of the Kunlun Mountains, an independent physical geographic subunit located in northwestern China on the northern edge of the Qinghai-Tibet Plateau. We integrated measures of species distribution, geological history, and phylogeography, and analyzed the taxonomic richness, phylogenetic diversity, and community phylogenetic structure of the current plant diversity in the area. The distribution patterns of 1911 seed plants showed that species were distributed mainly in the eastern regions of the Kunlun Mountains. The taxonomic richness, phylogenetic diversity, and genera richness showed that the eastern regions of the Kunlun Mountains should be the priority area of biodiversity conservation, particularly the southeastern regions. The proportion of Chinese endemic species inhabiting the Kunlun Mountains and their floristic similarity may indicate that the current patterns of species diversity were favored via species colonization. The Hengduan Mountains, a biodiversity hotspot, is likely the largest source of species colonization of the Kunlun Mountains after the Quaternary. The net relatedness index indicated that 20 of the 28 communities examined were phylogenetically dispersed, while the remaining communities were phylogenetically clustered. The nearest taxon index indicated that 27 of the 28 communities were phylogenetically clustered. These results suggest that species colonization and habitat filtering may have contributed to the current plant diversity of the Kunlun Mountains via ecological and evolutionary processes, and habitat filtering may play an important role in this ecological process.     

Environmental constraints at the edge of a species distribution, the Eurasian badger (Meles meles L.): a biogeographic approach

Aim This paper describes the distribution pattern (occurrence) of badgers (Meles meles L. 1758) in a Mediterranean mountain area of central Spain, in relation to landscape characteristics and climatic data. We test the fit of the badger occurrence pattern to the niche hypothesis predictions. Location We sampled twenty-four survey plots randomly distributed in the mountains of central Spain (Sierra de Guadarrama, Madrid): ten in the north and fourteen in the south slopes. All habitat types and climatic conditions typical of central Spain can be found. Methods The ocurrence of badgers in the plots were recorded through an exhaustive search of setts and latrines in four different (and evenly spaced) points in each plot. The index of occurrence was made by dividing the number of positive points (badger presence) by the total number of points sampled (four in all plots). Landscape patterns (% type of habitat in each plot) were obtained from detailed maps and climate data from meteorological stations placed in the plot. We analyse the contribution of landscape variables and climate data to explain the differences in badger occurrence through Pearson correlations and fixed one-way ANCOVA with climatic data as fixed factor, vegetation cover as covariates and badger occurrence as response variable. Additionally, we use an one-way ANOVA to check the differences in occurrence between north and south plots with the location of each plot as fixed factor. Results The results indicate that the badger is more abundant in rainy areas of the mountains, and in open landscapes vegetated by ash-tree forests than in closed landscapes vegetated by holm oak forests. In addition, the species is more abundant in the northern plots than in the southern ones. Northern plots were homogeneous areas characterized by their open landscape and wet climate, while southern plots were characterized by their dry climate and closed landscapes. In addition, climate (measured as summer rain) is more determinant than habitat type (holm oak cover) to explain the pattern of badger occurrence. Main conclusions Overall, we consider that the typical Mediterranean landscapes are poor habitats for badgers due to changes in the environmental conditions associated with concomitant changes in food resources. These data support the niche hypothesis to explain the changes in abundance or occurrence close to the edge of the distribution of species, and in particular, in Palearctic species in the Mediterranean area.     

The standing waters of Coll and Tiree in a national and international context

Summary

The aquatic vascular plants and charophytes were surveyed in a total of 200 standing waters on the Inner Hebridean islands of Coll and Tiree. A TWINSPAN classification of the sites is used to divide them into seven groups. The groups demonstrate the range of variation in the standing waters of the two islands, which in turn reflects the presence of a range of substrates from acidic peat to calcareous sand. The lake types and the rare species recorded from Coll and Tiree suggest that these standing waters are of outstanding national and international nature conservation value.     

Consistent response of vegetation dynamics to recent climate change in tropical mountain regions

Global climate change has emerged as a major driver of ecosystem change. Here, we present evidence for globally consistent responses in vegetation dynamics to recent climate change in the world's mountain ecosystems located in the pan‐tropical belt (30°N–30°S). We analyzed decadal‐scale trends and seasonal cycles of vegetation greenness using monthly time series of satellite greenness (Normalized Difference Vegetation Index) and climate data for the period 1982–2006 for 47 mountain protected areas in five biodiversity hotspots. The time series of annual maximum NDVI for each of five continental regions shows mild greening trends followed by reversal to stronger browning trends around the mid‐1990s. During the same period we found increasing trends in temperature but only marginal change in precipitation. The amplitude of the annual greenness cycle increased with time, and was strongly associated with the observed increase in temperature amplitude. We applied dynamic models with time‐dependent regression parameters to study the time evolution of NDVI–climate relationships. We found that the relationship between vegetation greenness and temperature weakened over time or was negative. Such loss of positive temperature sensitivity has been documented in other regions as a response to temperature‐induced moisture stress. We also used dynamic models to extract the trends in vegetation greenness that remain after accounting for the effects of temperature and precipitation. We found residual browning and greening trends in all regions, which indicate that factors other than temperature and precipitation also influence vegetation dynamics. Browning rates became progressively weaker with increase in elevation as indicated by quantile regression models. Tropical mountain vegetation is considered sensitive to climatic changes, so these consistent vegetation responses across widespread regions indicate persistent global‐scale effects of climate warming and associated moisture stresses.     

Single Nucleotide Polymorphisms in the Coding Region of the Developmental Gene Gcyc in Natural Populations of the Relict Ramonda myconi (Gesneriaceae)

Abstract: Gcyc is a developmental gene, present in the Gesneriaceae family, that has both highly conserved and highly variable regions. Ramonda myconi (Gesneriaceae) is a paleoendemic plant restricted to mountainous areas of NE Spain. In this study we examine the population variation in the coding region of Gcyc in R. myconi. The fast-evolving nature of the coding regions of the Gcyc gene plus the ancient history of R. myconi together provide an appropriate background to obtain the first insights into population-level variation in developmental genes of flowering plants. One locus of Gcyc was specifically amplified and sequenced. Four single nucleotide polymorphisms (SNPs) were detected in the 420 sequenced bases of the gene in two R. myconi populations. The Pyrenean population had only one SNP while all four SNPs were present in the southern population. Three out of four SNPs were non-synonymous. Such novel results indicate that the detection of SNPs in R. myconi over its entire distribution area could be used as an aid to reconstructing the population history of the species, as well as to investigate the relationship between developmental genes and morphological traits.     

Global analysis of reptile elevational diversity

Aim Latitudinal‐ and regional‐scale studies of reptile diversity suggest a predominant temperature effect, unlike many other vertebrate richness patterns which tend to be highly correlated with both temperature and water variables. Here I examine montane gradients in reptile species richness with separate analyses of snakes and lizards from mountains around the world to assess a predominant temperature effect and three additional theories of diversity, including a temperature–water effect, the species–area effect and the mid‐domain effect (MDE). Location Twenty‐five elevational gradients of reptile diversity from temperate, tropical and desert mountains in both hemispheres, spanning 10.3° N to 46.1° N. Methods Elevational gradients in reptile diversity are based on data from the literature. Of the 63 data sets found or compiled, only those with a high, unbiased sampling effort were used in analyses. Twelve predictions and three interactions of diversity theory were tested using nonparametric statistics, linear regressions and multiple regression with the Akaike information criterion (AIC). Results Reptile richness and, individually, snake and lizard richness on mountains followed four distinct patterns: decreasing, low‐elevation plateaus, low‐elevation plateaus with mid‐elevation peaks, and mid‐elevation peaks. Elevational reptile richness was most strongly correlated with temperature. The temperature effect was mediated by precipitation; reptile richness was more strongly tied to temperature on wet gradients than on arid gradients. Area was a secondary factor of importance, whereas the MDE was not strongly associated with reptile diversity on mountains. Main conclusions Reptile diversity patterns on mountains did not follow the predicted temperature–water effect, as all diversity patterns were found on both wet and dry mountains. But the influence of precipitation on the temperature effect most likely reflects reptiles' use of radiant heat sources (sunning opportunities) that are more widespread on arid mountains than wet mountains due to lower humidity, sparser vegetation and less cloud cover across low and intermediate elevations.     

Physical and chemical limnology of alpine lakes and pools in the Rwenzori Mountains (Uganda–DR Congo)

This study describes the physical and chemical properties of 17 Afroalpine lakes (>2 m deep) and 11 pools (<2 m deep) in the Rwenzori mountains, Uganda-DR Congo, with the aim to establish the baseline conditions against which to evaluate future environmental and biological changes in these unique tropical ecosystems, and to provide the foundation for lake-based paleoenvironmental studies. Most Rwenzori lakes are located above 3,500 m elevation, and dilute (5–52 μS/cm specific conductance at 25°C) open systems with surface in- and outflow. Multivariate ordination and pairwise correlations between environmental variables mainly differentiate between (1) lakes located near or above 4,000 m (3,890–4,487 m), with at least some direct input of glacial meltwater and surrounded by rocky catchments or alpine vegetation; and (2) lakes located mostly below 4,000 m (2,990–4,054 m), remote from glaciers and surrounded by Ericaceous vegetation and/or bogs. The former group are mildly acidic to neutral clear-water lakes (surface pH: 5.80–7.82; Secchi depth: 120–280 cm) with often above-average dissolved ion concentrations (18–52 μS/cm). These lakes are (ultra-) oligotrophic to mesotrophic (TP: 3.1–12.4 μg/l; Chl-a: 0.3–10.9 μg/l) and phosphorus-limited (mass TN/TP: 22.9–81.4). The latter group are mildly to strongly acidic (pH: 4.30–6.69) waters stained by dissolved organic carbon (DOC: 6.8–13.6 mg/l) and more modest transparency (Secchi-disk depth: 60–132 cm). Ratios of particulate carbon, particulate nitrogen and chlorophyll a in these lakes indicate that organic matter in suspension is primarily derived from the lakes’ catchments rather than aquatic primary productivity. Since key features in the Rwenzori lakes’ abiotic environment are strongly tied to temperature and catchment hydrology, these Afroalpine lake ecosystems can be expected to respond sensitively to climate change and glacier melting. Electronic supplementary material The online version of this article (doi: ) contains supplementary material, which is available to authorized users.