Structural characterization of the two refold dimers of recombinant bovine somatotropin (bST)

Two major dimers are generated during the folding/oxidation of inclusion bodies of recombinant bovine somatotropin (bST). These dimers represent the major part of the inactive high molecular weight species that are formed in this process. The structures of the two dimers are unambiguously determined by peptide mapping using trypsin, thrombin cleavage, and selective DTT reduction experiments. Results indicate that the formation of both dimers involves the large disulfide loop cysteines. The latter-eluting dimer from RP-HPLC, previously reported as a large loop concatenated dimer, was revised to be an antiparallel disulfide-linked dimer. On the other hand, the first eluting dimer is a concatenane in which two monomers are held together by the interlocking of the two large disulfide loops.     

Interim Responses of Floodplain Wetland Vegetation to Phase I of the Kissimmee River Restoration Project: Comparisons of Vegetation Maps from Five Periods in the River's History

Phase I of the Kissimmee River Restoration Project (KRRP) reestablished intermittent inundation of the river's floodplain by backfilling 12 km of the C‐38 flood control canal in 2001. We compared floodplain vegetation maps based on 2003 and 2008 aerial imagery (2 and 7 years following completion of Phase I, respectively) to vegetation maps from 1954 (pre‐channelization), 1974 (3 years after channelization), and 1996 (25 years after channelization) to evaluate broad‐scale vegetation responses to Phase I restoration. Results indicate that the extent of wetland plant communities expanded rapidly, more than doubling in area within 2 years after completion of Phase I, and that by 2008 wetlands had nearly recovered to pre‐channelization levels. However, full reestablishment of the pre‐channelization wetland mosaic has not yet occurred. Prior to channelization, much of the floodplain was dominated by a broadleaf marsh (BLM) community associated with extended, deep annual flooding, while shorter‐hydroperiod communities dominated the floodplain in 2003 and 2008. Prior to restoration construction, the reestablishment of BLM was predicted to be slow because suitable hydrology is dependent on project components that will not be in place until all restoration components are completed (projected for 2019). Hydrologic data indicate that the duration and variability of floodplain inundation have not yet achieved restoration targets over the entire Phase I study area. Other factors affecting vegetation responses are likely involved, including the age and viability of soil seed banks, the rarity of relict propagule sources following the channelized period, and competition from an invasive wetland shrub species.     

A simulation study on the accuracy of position and effect estimates of linked QTL and their asymptotic standard deviations using multiple interval mapping in an F2 scheme

Approaches like multiple interval mapping using a multiple-QTL model for simultaneously mapping QTL can aid the identification of multiple QTL, improve the precision of estimating QTL positions and effects, and are able to identify patterns and individual elements of QTL epistasis. Because of the statistical problems in analytically deriving the standard errors and the distributional form of the estimates and because the use of resampling techniques is not feasible for several linked QTL, there is the need to perform large-scale simulation studies in order to evaluate the accuracy of multiple interval mapping for linked QTL and to assess confidence intervals based on the standard statistical theory. From our simulation study it can be concluded that in comparison with a monogenetic background a reliable and accurate estimation of QTL positions and QTL effects of multiple QTL in a linkage group requires much more information from the data. The reduction of the marker interval size from 10 cM to 5 cM led to a higher power in QTL detection and to a remarkable improvement of the QTL position as well as the QTL effect estimates. This is different from the findings for (single) interval mapping. The empirical standard deviations of the genetic effect estimates were generally large and they were the largest for the epistatic effects. These of the dominance effects were larger than those of the additive effects. The asymptotic standard deviation of the position estimates was not a good criterion for the accuracy of the position estimates and confidence intervals based on the standard statistical theory had a clearly smaller empirical coverage probability as compared to the nominal probability. Furthermore the asymptotic standard deviation of the additive, dominance and epistatic effects did not reflect the empirical standard deviations of the estimates very well, when the relative QTL variance was smaller/equal to 0.5. The implications of the above findings are discussed.     

Evaluating management risks using landscape trajectory analysis: A case study of California fisher

Ecosystem management requires an understanding of how landscapes vary in space and time, how this variation can be affected by management decisions or stochastic events, and the potential consequences for species. Landscape trajectory analysis, coupled with a basic knowledge of species habitat selection, offers a straightforward approach to ecological risk analysis and can be used to project the effects of management decisions on species of concern. The fisher (Martes pennanti) occurs primarily in late-successional forests which, in the Sierra Nevada mountains, are susceptible to high-intensity wildfire. Understanding the effects of fuels treatments and fire on the distribution of fisher habitat is a critical conservation concern. We assumed that the more a treated landscape resembled occupied female fisher home ranges, the more likely it was to be occupied by a female and therefore the lower the risk to the population. Thus, we characterized important vegetation attributes within the home ranges of 16 female fishers and used the distribution of these attributes as a baseline against which the effects of forest management options could be compared. We used principal components analysis to identify the major axes defining occupied female fisher home ranges and these, in addition to select univariate metrics, became our reference for evaluating the effects of landscape change. We demonstrated the approach at two management units on the Sierra National Forest by simulating the effects of both no action and forest thinning, with and without an unplanned fire, on vegetation characteristics over a 45-yr period. Under the no action scenario, landscapes remained similar to reference conditions for approximately 30-yr until forest succession resulted in a loss of landscape heterogeneity. Comparatively, fuel treatment resulted in the reduction of certain forest elements below those found in female fisher home ranges yet little overall change in habitat suitability. Adding a wildfire to both scenarios resulted in divergence from reference conditions, though in the no action scenario the divergence was 4× greater and the landscape did not recover within the 45-yr timeframe. These examples demonstrate that combining the results of forest growth and disturbance modeling with habitat selection data may be used to quantify the potential effects of vegetation management activities on wildlife habitat. © 2011 The Wildlife Society.     

Validation of MEDALUS Fire Risk Index using Forest Fires Statistics through a multivariate approach

A Fire Risk Index (FIRISK) based on an original land cover/land use nomenclature has been developed in the framework of EU-funded MEDALUS projects and integrated into a composite index of sensitivity to desertification (the so called environmentally sensitive area index: ESAI). The objective of the present study is to introduce a validation approach assessing the correlation between the FIRISK and seven independent fire indicators and quantifying the similarity in their spatial distribution in a study area (Attica, Greece) characterized by high fire risk and fragmented land-use structure. The FIRISK correlated positively with four out of seven fire indicators (average fire size, percentage of burnt area on the total municipal area, percentage of cropland and pastures burnt in each fire) in a non-linear fashion. Cluster analysis indicates that FIRISK spatial distribution was coherent with variables describing both fire size and the use of land endangered by fire. Results of the present study demonstrate that the FIRISK is a reliable indicator of fire risk within the ESAI framework. Moreover, the index is considered a key component of multi-criteria decision support systems classifying land according to the level of fire sensitivity.     

Environmental and anthropogenic factors associated with coastal wetland differentiation in La Mancha,Veracruz, Mexico

At least 10% of the wetlands in Mexico are situated in the State of Veracruz on the central Gulf coast. The region has been intensively used for agriculture by humans for the last thousand years and today pastureland for cattle ranching is the dominant element of the landscape. We present a study of the wetland vegetation in a series of representative and internationally significant freshwater wetlands near the coastal lagoon La Mancha in Veracruz State. We obtained eleven wetland types formed by three wetland communities dominated by trees (mangrove or swamps), eight dominated by herbaceous species which we classified as marsh, five of which were native emergent marsh, one was a non-native emergent marsh and two were floating-leaved marsh. The highest diversity values were found in the Annona swamp, followed by the Sagittaria marsh and the Rhizophora–Laguncularia–Avicennia mangrove. CCA ordination showed that water level, disturbance and species number were the major factors explaining variation along axis 1, and on axis 2 conductivity, salinity, and bulk density. Wetland size was a major factor in both axes. We examined the interplay of intrinsic and extrinsic factors that give rise to the nature and diversity of wetland types that characterize the important wetland landscapes in this part of Mexico, being disturbance by human activities an important factor that favors the appearance of diverse species combinations.