Mapping of Calf Death in Japanese Black Cattle

Weak calf syndrome (WCS) is a major cause of calf death in Japanese Black cattle. Among IARS disorders, the isoleucyl-tRNA synthetase c.235G>C mutation has been identified as one of the causes of WCS. However, calf deaths differing from those attributed to IARS disorder has been occurring. To identify other genes potentially responsible for these calf deaths, we constructed three populations of three bulls (Bull-1, -2 and -3) that did not carry the IARS mutation, and dead calves (18, 28, and 31 calves) and healthy cattle (18, 15, and 10 cattle) sired by these bulls. The populations were genotyped using the BovineSNP50 BeadChip, but homozygosity mapping did not detect any associated genomic regions with calf death. Linkage analysis performed using each population as a paternal half-sib family of Bull-1, Bull-2, and Bull-3 revealed that, in the Bull-1 population, calf death was mapped to the 8.94?Mb–14.53?Mb and 29.82?Mb–33.77?Mb regions of BTA29. The findings suggested that the incidence of calf death in calves sired by Bull-1 was a hereditary disease exhibiting a dominant, not recessive, inheritance pattern.     

Assessing the effect of EWDP on vegetation restoration by remote sensing in the lower reaches of Tarim River

In this study, effect of ecological water diversion on vegetation restoration in the lower reaches of Tarim River is assessed by coupling remote sensing techniques and a field-based survey. Land use/cover and fractional vegetation coverage (Fvc) maps derived from remote sensing images, ground validation data, and hydrological observation data are adopted to analyze the responses of Ecological Water Diversion Project (EWDP). The results indicate that, the EWDP has showed a positive effect on vegetation restoration in the lower part of Tarim Basin. During 2001 to 2013, transformation from unused land to nature vegetation (i.e. forest land, grassland and scrubland) was the major process of land use/cover change; the area of natural vegetation showed a 4.7% increase, and the area of unused land reduced by 6.8%. Landscape patch size was decreased, the degree of fragmentation and diversity of landscape was increased, and landscape structure in the study area became more complex. Moreover, vegetation coverage promoted from 2001 to 2013; average Fvc in 2013 was 1.5 times greater than that in 2001. The results can provide not only an accurate assessment for the EWDP, but also a visual insight for the water resources management practices in the study area, such that the sustainability for local ecosystem can be facilitated.     

玉米叶片持绿性研究进展与对策

叶片持绿性(stay green或non-senescence)与植物叶片衰老相关,影响植物生长及生物产量。叶片持绿性相关研究主要集中于拟南芥等模式植物,玉米中的研究相对落后,但该研究对玉米产量、品质、抗病等具有重要意义。本文对玉米叶片持绿性的研究进展进行了综述,包括玉米叶片持绿性概念、评价指标、生理生化特性、遗传特性、基因/QTL定位等。提出了玉米持绿性研究存在的问题与相关对策。     

一个新水稻温敏感叶色突变体的遗传分析及其基因分子定位

在粳稻品种嘉花1号(Oryza sativa L. ssp. japonica ‘Jiahua No.1’)种子经⁶⁰Co γ射线辐照处理的后代中, 发现了1个低温敏感叶色突变体mr21。在较低温度(<25.0°C)条件下, 该突变体幼苗叶色呈黄色; 随着温度逐渐升高, 叶色由黄转绿,其临界温度约为27.5°C; 在低温条件下, 突变体幼苗总叶绿素含量以及叶绿素a、b的含量均较野生型嘉花1号明显下降, 表明该突变体的叶色性状具有明显的温敏感性。遗传分析表明, 该突变体叶色性状受1对隐性核基因控制, 暂将该突变基因命名为thermo-sensitive leaf-color 1(tsl-1)。以该突变体与籼稻9311(Oryza sativa L. ssp. indica ‘9311’)杂交的F₂代分离群体作为定位群体, 利用SSR分子标记将tsl-1基因初步定位在水稻(Oryza sativa)第1号染色体短臂上的MM1799与RM8132分子标记之间, 其遗传距离分别为2.4 cM和3.0 cM; 然后, 进一步利用扩大F₂代群体及新发展的分子标记将tsl-1基因定位在分子标记InDel2与InDel4之间的198 kb内。研究结果为今后对该基因的克隆和功能分析奠定了基础。     

融入植被连续性因子的生态单元制图法在城市生物多样性维护中的应用

基于一个以植被结构为构建框架的生态单元分类系统,构建了融入了植被覆盖连续性因子的改良城市生态单元制图模型,并将其应用于瑞典赫尔辛堡市的绿色空间研究.使用原生林地指示种或林地连续性指示种（AWIS）鉴定长、短连续性林地的分布,对比其含有维管束植物的物种丰富度,对植被覆盖的连续性因子进行评估检验.结果表明： 长连续性林地中含有较多的AWIS;在建群种均龄大于30年的林地中,长连续性林地相对于结构相似的短连续性林地通常含有较高的生物多样性.融入植被连续性因子的生态单元制图模型是调查城市生物多样性的重要工具,通过图谱中各生态单元所含有的生物多样性信息,可对今后城市生物多样性的维护提出相应策略.     

Complex inheritance of larval adaptation in Plutella xylostella to a novel host plant

Studying the genetics of host shifts and range expansions in phytophagous insects contributes to our understanding of the evolution of host plant adaptation. We investigated the recent host range expansion to pea, in the pea-adapted strain (P-strain) of the crucifer-specialist diamondback moth, Plutella xylostella (Lepidoptera: Plutellidae). Larval survivorship on the novel host plant pea and a typical crucifer host (kale) was measured in reciprocal F(1), F(2) and backcrosses between the P-strain and a strain reared only on crucifers (C-strain). Reciprocal F(1) hybrids differed: offspring from P-strain mothers survived better on pea, indicating a maternal effect. However, no evidence for sex-linkage was found. Backcrosses to the P-strain produced higher survivorship on pea than C-strain backcrosses, suggesting recessive inheritance. In a linkage analysis with amplified fragment length polymorphism markers using P-strain backcrosses, two, four and five linkage groups contributing to survival on pea were identified in three different families respectively, indicating oligogenic inheritance. Thus, the newly evolved ability to survive on pea has a complex genetic basis, and the P-strain is still genetically heterogeneous and not yet fixed for all the alleles enabling it to survive on pea. Survivorship on kale was variable, but not related to survivorship on pea. This pattern may characterize the genetic inheritance of early host plant adaptation in oligophagous insect species.     

Step-by-step evolution of neo-sex chromosomes in geographical populations of wild silkmoths,Samia cynthia ssp.

Geographical subspecies of wild silkmoths, Samia cynthia ssp. (Lepidoptera: Saturniidae), differ considerably in sex chromosome constitution owing to sex chromosome fusions with autosomes, which leads to variation in chromosome numbers. We cloned S. cynthia orthologues of 16 Bombyx mori genes and mapped them to chromosome spreads of S. cynthia subspecies by fluorescence in situ hybridization (FISH) to determine the origin of S. cynthia neo-sex chromosomes. FISH mapping revealed that the Z chromosome and chromosome 12 of B. mori correspond to the Z chromosome and an autosome (A₁) of S. c. ricini (Vietnam population, 2n=27, Z0 in female moths), respectively. B. mori chromosome 11 corresponds partly to another autosome (A₂) and partly to a chromosome carrying nucleolar organizer region (NOR) of this subspecies. The NOR chromosome of S. c. ricini is also partly homologous to B. mori chromosome 24. Furthermore, our results revealed that two A₁ homologues each fused with the W and Z chromosomes in a common ancestor of both Japanese subspecies S. c. walkeri (Sapporo population, 2n=26, neo-Wneo-Z) and S. cynthia subsp. indet. (Nagano population, 2n=25, neo-WZ₁Z₂). One homologue, corresponding to the A₂ autosome in S. c. ricini and S. c. walkeri, fused with the W chromosome in S. cynthia subsp. indet. Consequently, the other homologue became a Z₂ chromosome. These results clearly showed a step-by-step evolution of the neo-sex chromosomes by repeated autosome–sex chromosome fusions. We suggest that the rearrangements of sex chromosomes may facilitate divergence of S. cynthia subspecies towards speciation.     

Construction of an E. Coli genome-scale atom mapping model for MFA calculations

Metabolic flux analysis (MFA) has so far been restricted to lumped networks lacking many important pathways, partly due to the difficulty in automatically generating isotope mapping matrices for genome-scale metabolic networks. Here we introduce a procedure that uses a compound matching algorithm based on the graph theoretical concept of pattern recognition along with relevant reaction information to automatically generate genome-scale atom mappings which trace the path of atoms from reactants to products for every reaction. The procedure is applied to the iAF1260 metabolic reconstruction of Escherichia coli yielding the genome-scale isotope mapping model imPR90068. This model maps 90,068 non-hydrogen atoms that span all 2,077 reactions present in iAF1260 (previous largest mapping model included 238 reactions). The expanded scope of the isotope mapping model allows the complete tracking of labeled atoms through pathways such as cofactor and prosthetic group biosynthesis and histidine metabolism. An EMU representation of imPR90068 is also constructed and made available.