Microheterogeneity and coevolution: an examination of rDNA sequence characteristics in Neoparamoeba pemaquidensis and its prokinetoplastid endosymbiont

Neoparamoeba pemaquidensis, the etiological agent of amoebic gill disease, has shown surprising sequence variability among different copies of the 18S ribosomal RNA gene within an isolate. This intra-genomic microheterogeneity was confirmed and extended to an analysis of the internal transcribed spacer (ITS) region. High levels of intra-genomic nucleotide diversity (Pi=0.0201-0.0313) were found among sequenced ITS regions from individual host amoeba isolates. In contrast, the ITS region of its endosymbiont revealed significantly lower levels of intra-genomic nucleotide diversity (Pi=0.0028-0.0056) compared with the host N. pemaquidensis. Phylogenetic and ParaFit coevolution analyses involving N. pemaquidensis isolates and their respective endosymbionts confirmed a significant coevolutionary relationship between the two protists. The observation of non-shared microheterogeneity and coevolution emphasizes the complexity of the interactions between N. pemaquidensis and its obligate endosymbiont.     

Isolation,identification and characterization of soil microbes which degrade phenolic allelochemicals

Aims: To isolate and characterize microbes in the soils containing high contents of phenolics and to dissolve the allelopathic inhibition of plants through microbial degradation. Methods and Results: Four microbes were isolated from plant soils using a screening medium containing p‐coumaric acid as sole carbon source. The isolates were identified by biochemical analysis and sequences of their 16S or 18S rDNA, and designated as Pseudomonas putida 4CD1 from rice (Oryza sativa) soil, Ps. putida 4CD3 from pine (Pinus massoniana) soil, Pseudomonas nitroreducens 4CD2 and Rhodotorula glutinis 4CD4 from bamboo (Bambusa chungii) soil. All isolates degraded 1 g l^?1 of p‐coumaric acid by 70–93% in inorganic and by 99% in Luria‐Bertani solutions within 48 h. They also effectively degraded ferulic acid, p‐hydroxybenzoic acid and p‐hydroxybenzaldehyde. The microbes can degrade p‐coumaric acid and reverse its inhibition on seed germination and seedling growth in culture solutions and soils. Low pHs inhibited the growth and phenolic degradation of the three bacteria. High temperature inhibited the R. glutinis. Co²⁺ completely inhibited the three bacteria, but not the R. glutinis. Cu²⁺, Al³⁺, Zn²⁺, Fe³⁺, Mn²⁺, Mg²⁺ and Ca²⁺ had varying degrees of inhibition for each of the bacteria. Conclusions: Phenolics in plant culture solutions and soils can be decomposed through application of soil microbes in laboratory or controlled conditions. However, modification of growth conditions is more important for acidic and ions‐contaminated media. Significance and Impact of the Study: The four microbes were first isolated and characterized from the soils of bamboo, rice or pine. This study provides some evidence and methods for microbial control of phenolic allelochemicals.     

Does feeding on Bt-maize affect the slug Arion vulgaris (Mollusca: Arionidae)?

Via expression of Cry-proteins, toxic for specific insect groups, genetically modified Bacillus thuringiensis (Bt) maize offers an effective protection against insect pests. In a laboratory experiment with two transgenic and two non-transgenic maize varieties, a potential impact of Bt-maize was examined for the non-target slug Arion vulgaris. Lifetime after field collection, weight change and oviposition was examined for slugs fed with Bt-maize, non Bt-maize or dandelion (Taraxacum officinale). Test parameters were neither significantly different between transgenic and non-transgenic varieties nor among the maize varieties overall. Slugs fed with dandelion showed a significantly longer lifetime after field collection, gained significantly more weight and laid eggs. The results did not show a Bt-effect but indicated the general poor quality of maize as food resource for slugs.     

Improved understanding of the interactions and complexities of biological nitrogen and phosphorus removal processes

Nitrogen and phosphorus removal from wastewater is now considered essential for the protection of our waterways. Biological nutrient removal processes are generally the most efficient and cost-effective solution to achieve this. While the principles of these processes are well known, intriguing and useful details are being discovered with the recent advances in bio-process engineering and microbial sciences. Phosphorus accumulating organisms have only been identified in recent years, and there are now competing glycogen accumulating organisms being found in biological phosphorus removal systems. These can possibly explain the reasons for the variable phosphorus removal performance of certain systems, and their control can help in the development of more stable and better performing processes. Detailed investigations of the traditional nitrification-denitrification systems, but also of novel developments for nitrogen removal, reveal a more complex and diverse range of processes involved in these transformations. Increasingly, linked phosphorus and nitrogen removal processes are being developed, creating further opportunities to optimise the technologies. However, this might also bring certain risks such as the potential to produce the greenhouse-gas nitrous oxide (N₂O) rather than nitrogen gas as the final denitrification product. A range of recent developments in these areas is covered in this paper.     

Validation of a cotton-specific gene, Sad1, used as an endogenous reference gene in qualitative and real-time quantitative PCR detection of transgenic cottons

Genetically modified (GM) cotton lines have been approved for commercialization and widely cultivated in many countries, especially in China. As a step towards the development of reliable qualitative and quantitative PCR methods for detecting GM cottons, we report here the validation of the cotton (Gossypium hirsutum) endogenous reference control gene, Sad1, using conventional and real-time (RT)-PCR methods. Both methods were tested on 15 different G. hirsutum cultivars, and identical amplicons were obtained with all of them. No amplicons were observed when DNA samples from three species of genus Gossypium, Arabidopsis thaliana, maize, and soybean and others were used as amplified templates, demonstrating that these two systems are specific for the identification and quantification of G. hirsutum. The results of Southern blot analysis also showed that the Sad1 gene was two copies in these 15 different G. hirsutum cultivars. Furthermore, one multiplex RT-quantitative PCR employing this gene as an endogenous reference gene was designed to quantify the Cry1A(c) gene modified from Bacillus thuringiensis (Bt) in the insect-resistant cottons, such as Mon531 and GK19. The quantification detection limit of the Cry1A(c) and Sad1 genes was as low as 10 pg of genomic DNA. These results indicat that the Sad1 gene can be used as an endogenous reference gene for both qualitative and quantitative PCR detection of GM cottons.     

营养素和医药

有机体用营养素来维持自己的正常生活,用医药来调节它们的代谢失衡状态.某种有机体营养素种类和数量同此有机体的进化程度呈正相关.从某种意义上说,医药是准营养素,如不加限制地使用,可能会变成营养素,而转基因技术有可能推进这一过程.     

Sources of organic matter for intertidal consumers on Ascophyllum-shores (SW Iceland): a multi-stable isotope approach

Stable isotopes were used to examine the origin of organic matter in Icelandic Ascophyllum-based habitats, the role of different organic matters in filling intertidal food webs and the food preferences of the most abundant suspension feeders, grazers and predators. We selected three intertidal sites on the SW coast of Iceland where we sampled in early September 2004, organic matter sources (POM, SOM and most abundant primary producers, A. nodosum and F. vesciculosus) and the most abundant macrofauna species (barnacles, mussels, gastropods, sponge and crabs). Even though the primary production (Ascophyllum-based) was the same at the three study sites, the isotopic composition of common-among-sites organisms varied due to local differences in the origin of available POM and SOM and in food web structures.     

理性认识转基因植物食品的安全性

讨论现代生物技术的几个基本概念 ,如转基因生物、基因修饰生物、重组DNA植物以及对转基因植物食品安全性评价框架 ,阐明作者对转基因植物食品安全性的理解。