降低mRNA差异显示技术假阳性率的一种方法

为了探讨降低mRNA差异显示技术假阳性率的方法 ,进一步提高此技术的可靠性 ,提取了手术切除肝癌及非癌肝组织成对标本的总RNA ,逆转录获得cDNA片段 ,以mRNA差异显示方法筛选差异表达基因 ,选取较明显的一条差异表达条带 ,行进一步PCR扩增 .分别对PCR产物及其经TA克隆后随机挑选的 6个单克隆质粒DNA进行序列分析 ,并通过GenBank BLAST数据库进行序列的同源性比较 ,以Northern杂交予以来源确认 .自 72 0余条扩增条带中共选出 2 8条差异条带 .序列分析及同源性比较表明 ,所选择条带的PCR产物为一可能的新基因片段 ;而随机选择的 6个TA克隆质粒DNA中 ,有 4个为同一已知基因片段 ,一个为另一已知基因片段 ,一个为一可能的新基因片段 .同源性比较表明 ,PCR产物直接测序所得序列与TA克隆质粒DNA的 6个片段不具同源性 .结果表明 ,mRNA差异显示条带可能由 1条以上分子量相似的片段构成 ,直接对PCR产物行序列分析并以其为探针进行Northern杂交 ,是导致出现假阳性片段的原因之一 .将PCR产物进行TA克隆 ,对单克隆质粒DNA进行序列分析并以其为探针进行Northern杂交 ,可能是解决此问题的一种较好方法 .     

抑瘤基因NGX6对鼻咽癌细胞株HNE1细胞生长的影响(英文)

鼻咽癌是我国南方多发恶性肿瘤 ,它的发生发展与遗传因素密切相关 .采用定位候选克隆策略在 9p上克隆出一个候选抑瘤基因 ,命名为NGX6 .为了进一步研究它的功能 ,将NGX6基因的全长cDNA片段亚克隆至pcDNA3.1(+ )的表达载体中 ,通过脂质体转染入鼻咽癌细胞系HNE1中 ,Northern杂交方法筛选高效表达NGX6的细胞株 ,并借助细胞生长曲线、软琼脂糖集落形成实验、裸鼠体内接种实验和流式细胞仪对转染细胞的生物学行为进行了检测 .结果显示 ,转染了NGX6基因的HNE1细胞的生长速度明显减慢 ,在软琼脂中集落形成率较对照组显著下降 (P〈0 0 5 ) ,裸鼠体内成瘤的时间较对照组明显延长 ,瘤体的大小和重量较对照组明显减少 ,流式细胞仪检测发现细胞的凋亡率无明显变化 .为了明确NGX6蛋白在细胞中发挥作用的部位 ,进一步将NGX6的开放阅读框架完整正确地克隆到pEGFPC1的荧光载体中 ,转染到COS7细胞中 ,用荧光显微镜观察细胞中荧光的分布 ,发现荧光主要分布在细胞浆中 ,说明NGX6蛋白可能是一种胞浆蛋白 .该研究表明 ,NGX6在NPC的发生发展中起重要作用 ,为全面阐述NGX6的功能提供重要的信息 ,为进一步的功能研究打下基础     

生物信息学在发现新基因方面的应用

自生物信息学作为一门交叉学科诞生以来,其在计算机、农业和生命科学等各方面发挥了重要的作用,在后基因组时代,更是成为发现新基因的重要手段。对生物信息学的概况做了回顾与展望,并简述了生物信息学近年在发现新基因方面所取得的成果。     

Four members of the Sox gene family in channel catfish

The homologous sequences of human or mouse SOX1, SOX4 and SOX11 , and one novel Sox gene (named Ccf-SoxN ) were identified in the genome of channel catfish Ictalurus punctatus . Identification of these genes is a potential step in understanding development regulations including sex determination in channel catfish.     

Evolution of the Larval Cuticle Proteins Coded by the Secondary Sex Chromosome Pair: X2 and Neo-Y of Drosophila miranda: I. Comparison at the DNA Sequence Level

The larval cuticle protein genes (Lcps) represent a multigene family located at the right arm of the metacentric autosome 2 (2R) in Drosophila melanogaster. Due to a chromosome fusion the Lcp locus of Drosophila miranda is situated on a pair of secondary sex chromosomes, the X2 and neo-Y chromosome. Comparing the DNA sequences from D. miranda and D. melanogaster organization and the gene arrangement of Lcp1–Lcp4 are similar, although the intergene distances vary considerably. The greatest difference between Lcp1 and Lcp2 is due to the occurrence of a pseudogene in D. melanogaster which is not present in D. miranda. Thus the cluster of the four Lcp genes existed already before the separation of the melanogaster and obscura group. Intraspecific homogenizations of different cluster units must have occurred repeatedly between the Lcp1/Lcp2 and Lcp3/Lcp4 sequence types. The most obvious example is exon 2 of the Lcp3 gene in D. miranda, which has been substituted by the corresponding section of the Lcp4 gene rather recently. The homogenization must have occurred before the translocation which generated the neo-Y chromosome. Lcp3 of D. melanogaster has therefore no orthologous partner in D. miranda. Rearrangements in the promoter regions of the D. miranda Lcp genes have generated new, potentially functional CAAT-box motifs. Since three of the Lcp alleles on the neo-Y are not expressed and Lcp3 is expressed only at a reduced level, it is suggestive to speculate that the rearrangements might be involved as cis-regulatory elements in the up-regulation of the X2-chromosomal Lcp alleles, in Drosophila an essential process for dosage compensation. The Lcp genes on the neo-Y chromosome have accumulated more base substitutions than the corresponding alleles on the X2. Received: 27 December 1995 / Accepted: 30 April 1996     

转录因子NF-κB p50基因的克隆、表达及抗p50抗体的制备

利用ＤＮＡ重组技术,将转录因子ＮＦ－κＢｐ５０基因片段插入ｐＧＥＸ－２Ｔ质粒载体,经ＤＮＡ序列分析证明克隆的正确性．将重组的ｐＧＥＸ－２Ｔ／ｐ５０转化入大肠杆菌ＪＭ１０９,表达出ｐＧＥＸ－２Ｔ／ｐ５０融合蛋白．经ＷｅｓｔｅｒｎＢｌｏｔ检测证实表达产物对抗ｐ５０ｃ的抗体呈特异性反应,表明克隆的正确性,并成功地应用纯化的ｐ５０蛋白制备了免疫血清．为进一步对ＮＦ－κＢ的功能进行研究打下了良好的基础     

昆虫细胞表达的网状内皮组织增殖症病毒囊膜糖蛋白及其免疫性

利用Bac-to-BacBaculovirusExpressionSystems构建了能表达禽网状内皮组织增殖症病毒(REV)囊膜糖蛋白基因(env)的重组杆状病毒。用REV特异性单克隆抗体分别做间接免疫荧光抗体试验(IFA)和免疫转印试验,均可从感染的Sf9昆虫细胞中检出REVenv。重组杆状病毒感染的Sf9细胞裂解后制备成油乳疫苗免疫SPF鸡后,可以诱发维持45d以上的特异性抗REV抗体,并可抵抗REV病毒感染。     

海洋细菌Agarivorans sp.HZ105的琼胶降解酶系

通过克隆得到菌株Agarivorans sp.HZ105中3个琼胶酶基因,长度分别为2 988 bp、1 437 bp和1 362 bp,分别编码琼胶酶HZ1、HZ3和HZ4,分别属于糖苷水解酶GH50、GH118和GH16家族。将这些琼胶酶基因与质粒p ET-32(a)构建重组表达载体,转化大肠杆菌BL21(DE3),实现了琼胶酶基因的重组原核表达,制备了重组酶,研究了琼胶酶的酶解产物。琼胶酶HZ1降解琼脂糖以及高聚合度新琼寡糖(聚合度为8、10、12和14)得到新琼二糖和新琼四糖;琼胶酶HZ3降解琼脂糖的终产物是高聚合度新琼寡糖;琼胶酶HZ4降解琼脂糖和高聚合度新琼寡糖为新琼四糖和新琼六糖。因此推测菌株HZ105主要先用琼胶酶HZ3和HZ4降解琼脂糖为较高聚合度的新琼寡糖,随后这些寡糖被琼胶酶HZ1和HZ2(课题组先前报道的另一个琼胶酶)降解为低聚合度新琼寡糖。首次研究报道了Agarivorans属中能产生4个琼胶酶的细菌菌株及其琼胶降解酶系,丰富了有关细菌降解琼胶酶体系及其中各琼胶酶作用的研究和认识,也有利于菌株HZ105琼胶酶的有效开发应用。     

Relationship of cellular oncogene expression to inhibition of growth and induction of differentiation of Daudi cells by interferons or TPA

Human alpha or beta interferons inhibit the proliferation of Daudi Burkitt lymphoma cells and induce the differentiation of these cells towards a mature plasma cell phenotype. Similar responses are seen when Daudi cells are treated with the phorbol ester, TPA. Both interferons and TPA down-regulate expression of the c-myc oncogene in these cells. Although TPA can mimic the effect of interferon on cell differentiation, it does not induce 2'5' oligoadenylate synthetase or the interferon-sensitive mRNAs, 6-16 or 9-27. Thus chronic stimulation of protein kinase C by TPA cannot mimic all of the effects of interferon treatment on gene expression. Inhibition of ADP-ribosyl transferase activity by 3-methoxybenzamide impairs interferon- or TPA-induced differentiation of Daudi cells. This agent induces a higher level of c-myc mRNA in the cells and stimulates the incorporation of [3H]thymidine into DNA; although these effects are partially counteracted by interferon or TPA treatment, the elevated expression of the c-myc gene may be sufficient to prevent terminal differentiation and allow cell proliferation to continue.