Iron deficiency in rice shoots: identification of novel induced genes using RDA and possible relation to leaf senescence

Rice plants are highly susceptible to Fe-deficiency. Under nutrient deprivation, plant cells undergo extensive metabolic changes for their continued survival. To provide further insight into the pathways induced during Fe-deficiency, rice seedlings were grown for 3, 6 and 9 days in the presence or absence of Fe. Using RDA (Representational Difference Analysis), sequences of 32 induced genes in rice shoots under Fe-deficiency were identified. About 30% of the sequences found have been previously reported as responsive to other abiotic and even biotic stresses. However, this is the first report that indicates their relation to Fe deprivation. Differential expression of selected genes was confirmed by semi-quantitative RT-PCR analysis. The identification of classical senescence-related sequences, such as lipase EC 3.1.1.-, ubiquitin-conjugating enzyme EC 6.3.2.19, beta-Glucosidase EC 3.2.1.21 and cysteine synthase EC 2.5.1.47, besides the higher accumulation of total soluble sugars prior to the decrease of total chlorophyll content in Fe-deficient leaves, indicate that sugar accumulation may be one of the factors leading to premature leaf senescence induced by Fe-deficiency.     

基于统计差表与加权投票的高精度剪接位点预测

基于机器学习的高精度剪接位点识别是真核生物基因组注释的关键.本文采用卡方测验确定序列窗口长度,构建卡方统计差表提取位置特征,并结合碱基二联体频次表征序列;针对剪接位点正负样本高度不均衡这一情形,构建10个正负样本均衡的支持向量机分类器,进行加权投票决策,有效解决了不平衡模式分类问题. HS~3D数据集上的独立测试结果显示,供体、受体位点预测准确率分别达到93.39%、90.46%,明显高于参比方法.基于卡方统计差表的位置特征能有效表征DNA序列,在分子序列信号位点识别中具有应用前景.     

1982—2015年新疆地区植被生长对气温的响应

基于1982-2015年归一化植被指数(NDVI)数据集、植被类型和气象数据,采用滑动偏相关分析、线性趋势分析和GIS空间分析方法,揭示了新疆地区生长季植被对气温响应的变化特征.结果表明:研究期间,在整个生长季,新疆地区植被活动对气温变化的响应强度呈现明显的降低趋势;季节尺度上,这种响应关系的变化趋势在夏、秋两季较为明显,春季植被活动对气温变化响应的变化趋势与之相反.在整个生长季,不同类型植被对气温变化的响应呈现减弱态势;在春季,草地和森林对气温变化的响应呈现显著增强趋势,而灌丛和荒漠对气温变化的响应趋势正好相反;在夏季,4种植被(草地、灌丛、荒漠、森林)对气温变化的响应均呈现显著降低趋势;在秋季,4种植被对气温变化的响应均没有显著的统计学特征.新疆地区生长季气温对植被的影响力减弱具有区域的普遍性特征,这可能与研究区降雨和太阳辐射活动变化的有关.     

Emotion makes a difference: Induced sadness reduces preschool boys' sharing behavior

This study investigated how external negative emotional stimuli influenced 5–6-year-old children's (N?=?98) sharing behavior. Children were asked to watch a video that induced either sad or neutral emotion and then share stickers simultaneously with poor and wealthy recipients. Compared to the neutral emotion condition, boys shared less, and offered more self-focused reasons for sharing after being induced sad emotions; girls however, shared equally, and provided self-focused and other-focused reasons equally in both emotional conditions. Results indicated that sadness increased children's tendency to defend their own interest in boys but not in girls, which supports the evolutionary “male warrior hypothesis”. In addition, although children indicated that they liked the wealthy recipient better than the poor one, they shared equally between the two recipients, suggesting an early development of equality concern and charity behavior (i.e., care for the disadvantaged individuals). These findings revealed gender differences in the socio-affective processes underlying children's resource allocation and added developmental evidence for the adaptive function of negative emotions.     

SSR标记在毛木耳种质资源遗传多样性研究中的应用

本研究利用基于毛木耳全基因组开发的SSR标记对27份毛木耳菌株（野生14株、栽培13株）的遗传多样性进行分析。首先随机选取3个菌株（2个野生菌株、1个栽培菌株）的DNA为模板,从144对SSR引物中筛选出扩增条带清晰、稳定性强、多态性丰富的引物24对。24对SSR引物共检测到116个多态性SSR片段,每对引物的多态性片段有3-7个,引物平均检测效率为4.83个,Shannon’s遗传多样性指数范围是0.866-1.885,多态性位点比率100%。供试菌株遗传相似系数范围是0.618-0.971,说明毛木耳种质资源具有丰富的遗传多样性。野生菌株与栽培菌株间平均遗传相似系数分别为0.746、0.779,说明毛木耳野生菌株遗传多样性更为丰富。经聚类分析,在遗传相似系数为0.680时,可将供试菌株分为无色（白色）类群Ⅰ和有色（浅黄色到红褐色）类群Ⅱ。遗传相似系数为0.704时,可将供试菌株中栽培菌株和野生菌株明显区分（14株野生菌株均在类群Ⅱ-2中,13株栽培菌株分别在类群Ⅰ和Ⅱ-1中）。本研究表明基于全基因组的SSR标记能从分子水平上揭示各菌株间的遗传差异,丰富毛木耳遗传多样性的研究手段,并为进一步进行毛木耳的品种选育、遗传学研究等提供有力手段。     

基于邻域最大差值与区域合并的油茶毒蛾幼虫图像分割

【目的】油茶树害虫的种类较多,其中油茶毒蛾Euproctis pseudoconspersa幼虫是危害较大的害虫之一。为完成油茶毒蛾幼虫的自动检测需要对其图像进行分割,油茶毒蛾幼虫图像的分割效果直接影响到图像的自动识别。【方法】本文提出了基于邻域最大差值与区域合并的油茶毒蛾幼虫图像分割算法,该方法主要是对相邻像素RGB的3个分量进行差值运算,最大差值若为0,则进行相邻像素合并得出初始的分割图像,根据合并准则进一步合并,得到最终分割结果。【结果】实验结果表明,该算法可以快速有效地将油茶毒蛾幼虫图像中的背景和虫体分割开来。【结论】使用JSEG分割算法、K均值聚类分割算法、快速几何可变形分割算法和本文算法对油茶毒蛾幼虫图像进行分割,将结果进行对比发现本文方法的分割效果最佳,且处理时间较短。     

Differentially methylated genomic fragments related with sexual dimorphism of rice pests,Sogatella furcifera

Sogatella furcifera (Hovarth) is a major rice pest with sexual dimorphism. The objective of the current research was to monitor differentially cytosine methylation at CCGG sequences in male and female adults of S. furcifera to determine the association between gene methylation and sexual phenotypes using methylation‐sensitive representational difference analysis. After the second subtractive hybridization, four differentially methylated DNA bands were obtained and sequenced. Ten different fragments were found. One fragment from the positive hybridization was 120 bp, and highly similar to the tramtrack genes from Nasonia vitripennis. Another fragment from the reverse hybridization was 414 bp, and homologous to the 28S rRNA gene of S. furcifera with a similarity rate as high as 99%. We also discussed how DNA methylation of tramtrack and 28S rRNA genes produced effects on sexual differentiation and development. These results provide potential evidence that DNA methylation of some genes may be related to sexual phenotype variations in S. furcifera and will facilitate future studies on the epigenetic mechanisms of insect sexual dimorphism.     

北方寒带地区透明颤菌理化特性的研究

目的为了研究透明颤菌在微生物发酵工业生产中的应用,对东北寒带地区透明颤菌的理化特性进行研究。方法透明颤菌的分离采用培养基(PYA)富集培养与形态观察的方法,采用分光光度计、光扫描与CO差示光谱确定透明颤菌的生理生化性质。结果研究分离的透明颤菌在蛋白胨0.4%,酵母0.6%,NaAc 0.02%,pH7.8,34℃,150 r/min时可获得较大生长速率,NaAc浓度为1%,pH7.5-8.0时菌体生长最快。透明颤菌在稳定期血红素含量约为每克湿菌中11 nmol,样品在5000 r/min离心后出现血红蛋白的吸收峰。结论分离培养出寒带地区生长的透明颤菌,并确定了其理化性质,为在发酵工业生产中应用透明颤菌奠定了参考依据。     

Interval Estimation of Simple Difference in Dichotomous Data with Repeated Measurements

When comparing two treatments, we often use the simple difference between the probabilities of response to measure the efficacy of one treatment over the other. When the measurement of outcome is unreliable or the cost of obtaining additional subjects is high relative to that of additional measurements from the obtained subjects, we may often consider taking more than one measurement per subject to increase the precision of an interval estimator. This paper focuses discussion on interval estimation of simple difference when we take repeated measurements per subject. This paper develops four asymptotic interval estimators of simple difference for any finite number of measurements per subject. This paper further applies Monte Carlo simulation to evaluate the finite‐sample performance of these estimators in a variety of situations. Finally, this paper includes a discussion on sample size determination on the basis of both the average length and the probability of controlling the length of the resulting interval estimate proposed elsewhere.