Methods matter: Different biodiversity survey methodologies identify contrasting biodiversity patterns in a human modified rainforest — A case study with amphibians

Understanding how well tropical forest biodiversity can recover following habitat change is often difficult due to conflicting assessments arising from different studies. One often overlooked potentially confounding factor that may influence assessments of biodiversity response to habitat change, is the possibility that different survey methodologies, targeting the same indicator taxon, may identify different patterns and so lead to different conclusions. Here we investigated whether two different but commonly used survey methodologies used to assess amphibian communities, pitfall trapping and nocturnal transects, indicate the same or different responses of amphibian biodiversity to historic human induced habitat change. We did so in a regenerating rainforest study site located in one of the world’s most biodiverse and important conservation areas: the Manu Biosphere Reserve. We show that the two survey methodologies tested identified contrasting biodiversity patterns in a human modified rainforest. Nocturnal transect surveys indicated biodiversity differences between forest with different human disturbance histories, whereas pitfall trap surveys suggested no differences between forest disturbance types, except for community composition. This pattern was true for species richness, diversity, overall abundance and community evenness and structure. For some fine scale metrics, such as species specific responses and abundances of family groups, both methods detected differences between disturbance types. However, the direction of differences was inconsistent between methods. We highlight that for assessments of rainforest recovery following disturbance, survey methods do matter and that different biodiversity survey methods can identify contrasting patterns in response to different types of historic disturbance. Our results contribute to a growing body of evidence that arboreal species might be more sensitive indicators than terrestrial communities.     

An international network to monitor the structure,composition and dynamics of Amazonian forests (RAINFOR)

Abstract. The Amazon basin is likely to be increasingly affected by environmental changes: higher temperatures, changes in precipitation, CO₂ fertilization and habitat fragmentation. To examine the important ecological and biogeochemical consequences of these changes, we are developing an international network, RAINFOR, which aims to monitor forest biomass and dynamics across Amazonia in a co‐ordinated fashion in order to understand their relationship to soil and climate. The network will focus on sample plots established by independent researchers, some providing data extending back several decades. We will also conduct rapid transect studies of poorly monitored regions. Field expeditions analysed local soil and plant properties in the first phase (2001–2002). Initial results suggest that the network has the potential to reveal much information on the continental‐scale relations between forest and environment. The network will also serve as a forum for discussion between researchers, with the aim of standardising sampling techniques and methodologies that will enable Amazonian forests to be monitored in a coherent manner in the coming decades.     

Dating of non-oak species in the United Kingdom historical buildings archive using stable oxygen isotopes

Stable oxygen isotope dendrochronology is an effective precision-dating method for fast grown, invariant (complacent) tree-rings and for trees growing in moist, temperate climatic regions where growth may not be strongly controlled by climate. The method works because trees preserve a strong common isotopic signal, from summer precipitation, and therefore do not need to be physiologically stressed to record a dating signal. This study explores the working hypothesis that whilst tree species may differ in their eco-physiology, leaf morphology and wood anatomy they will record an isotopic signal in their growth rings that is sufficiently similar to enable their precise dating against isotopic reference chronologies developed using dated oak tree rings from the same region. Modern and historical samples from six species (sweet chestnut, English elm, ash, alder, European beech and black poplar) were analysed and their oxygen isotopic variability was compared against an oak master chronology previously developed for central southern England. Whilst differences in the relative strength of the agreement between the different species and the master chronology are apparent, the potential for interspecies dating is demonstrated convincingly. The ability to date non-oak species using stable oxygen isotopes opens-up new opportunities for science-based archaeology and will improve understanding of a largely-unexplored, but significant part of the European historical buildings archive.     

Trade-off between water transport efficiency and leaf life-span in a tropical dry forest

Drought-deciduous and evergreen species coexist in tropical dry forests. Drought-deciduous species must cope with greater seasonal leaf water-potential fluctuations than evergreen species and this may increase their susceptibility to drought-induced xylem embolism. The relationship between water transport efficiency and leaf life-span were determined for both groups. They differed in seasonal changes of both, wood water content (W _c) and wood specific gravity (G). During the dry season, the W _c in drought-deciduous species declined and the minimum value was recorded when leaf fall was complete. At this time, the volumetric fraction of gas (V _g) increased indicating air entry into xylem vessels. In contrast, W _c, G and V _g changed only slightly throughout the year for evergreen species. Maximum hydraulic conductivity of drought-deciduous species was 2–6 times that of the evergreen species. but was severely reduced at leaf fall. In the evergreen species, similar water conductivities were measured during wet and dry seasons. The trade-off between xylem water transport capacity and leaf lifespan found in species coexisting in this forest reveals the existence of contrasting but successful adaptations to this environment. Drought-deciduous species maximize production in the short term with higher water transport efficiency which leads to the seasonal occurrence of embolisms. Conversely, the behaviour of evergreen species with reduced maximum efficiency is conservative but safe in relation to xylem embolism.     

Detecting long‐term growth trends using tree rings: a critical evaluation of methods

Tree‐ring analysis is often used to assess long‐term trends in tree growth. A variety of growth‐trend detection methods (GDMs) exist to disentangle age/size trends in growth from long‐term growth changes. However, these detrending methods strongly differ in approach, with possible implications for their output. Here, we critically evaluate the consistency, sensitivity, reliability and accuracy of four most widely used GDMs: conservative detrending (CD) applies mathematical functions to correct for decreasing ring widths with age; basal area correction (BAC) transforms diameter into basal area growth; regional curve standardization (RCS) detrends individual tree‐ring series using average age/size trends; and size class isolation (SCI) calculates growth trends within separate size classes. First, we evaluated whether these GDMs produce consistent results applied to an empirical tree‐ring data set of Melia azedarach, a tropical tree species from Thailand. Three GDMs yielded similar results – a growth decline over time – but the widely used CD method did not detect any change. Second, we assessed the sensitivity (probability of correct growth‐trend detection), reliability (100% minus probability of detecting false trends) and accuracy (whether the strength of imposed trends is correctly detected) of these GDMs, by applying them to simulated growth trajectories with different imposed trends: no trend, strong trends (?6% and +6% change per decade) and weak trends (?2%, +2%). All methods except CD, showed high sensitivity, reliability and accuracy to detect strong imposed trends. However, these were considerably lower in the weak or no‐trend scenarios. BAC showed good sensitivity and accuracy, but low reliability, indicating uncertainty of trend detection using this method. Our study reveals that the choice of GDM influences results of growth‐trend studies. We recommend applying multiple methods when analysing trends and encourage performing sensitivity and reliability analysis. Finally, we recommend SCI and RCS, as these methods showed highest reliability to detect long‐term growth trends.     

Long‐term growth‐increment chronologies reveal diverse influences of climate forcing on freshwater and forest biota in the Pacific Northwest

Analyses of how organisms are likely to respond to a changing climate have focused largely on the direct effects of warming temperatures, though changes in other variables may also be important, particularly the amount and timing of precipitation. Here, we develop a network of eight growth‐increment width chronologies for freshwater mussel species in the Pacific Northwest, United States and integrate them with tree‐ring data to evaluate how terrestrial and aquatic indicators respond to hydroclimatic variability, including river discharge and precipitation. Annual discharge averaged across water years (October 1–September 30) was highly synchronous among river systems and imparted a coherent pattern among mussel chronologies. The leading principal component of the five longest mussel chronologies (1982–2003; PC1_mussel) accounted for 47% of the dataset variability and negatively correlated with the leading principal component of river discharge (PC1_discharge; r = ?0.88; P < 0.0001). PC1_mussel and PC1_discharge were closely linked to regional wintertime precipitation patterns across the Pacific Northwest, the season in which the vast majority of annual precipitation arrives. Mussel growth was also indirectly related to tree radial growth, though the nature of the relationships varied across the landscape. Negative correlations occurred in forests where tree growth tends to be limited by drought while positive correlations occurred in forests where tree growth tends to be limited by deep or lingering snowpack. Overall, this diverse assemblage of chronologies illustrates the importance of winter precipitation to terrestrial and freshwater ecosystems and suggests that a complexity of climate responses must be considered when estimating the biological impacts of climate variability and change.     

Differential effects of typhoons on ichthyotoxic Cochlodinium polykrikoides red tides in the South Sea of Korea during 2012–2014

The harmful dinoflagellate Cochlodinium polykrikoides is known to cause fish death by gill-clogging when its abundance exceeds approximately 1000 cells ml⁻¹. Thus, red tides of this dinoflagellate have caused considerable loss in the aquaculture industry worldwide. Typhoons carrying strong winds and heavy rains may alter the process of red tide events. To investigate the effects of typhoons on C. polykrikoides red tides, daily variations in the abundance of C. polykrikoides, and wind speeds in three study areas in the South Sea of Korea were analyzed during the periods of C. polykrikoides red tides and the passage of 14 typhoons during 2012–2014. The typhoons differentially affected Cochlodinium red tides during the study period, and the daily maximum wind speed generated by the typhoon was critical. Four typhoons with daily maximum wind speeds of >14 m s⁻¹ eliminated Cochlodinium red tides, while three typhoons with daily maximum wind speed of 5–14 m s⁻¹ only lowered the abundance. However, other typhoons with daily maximum wind speeds of <5 m s⁻¹ had no marked effect on the Cochlodinium abundance. Therefore, typhoons may sometimes eliminate C. polykrikoides red tide events, or reduce cell abundances to a level that is not harmful to caged fish cultivated in aquaculture industries. Thus, typhoons should be considered when compiling red tide dynamics and fish-kill models.