Log-relative growth: A new dendrochronological approach to study diameter growth in Cedrela odorata and Juglans neotropica,Central Forest,Peru

Many studies regarding growth in diameter at breast height (D) in trees suffer from several problems, including heteroscedasticity, temporal autocorrelation and very low statistical adjustments. In growth ring studies, growth models are sometimes omitted, presenting only a mean curve or smoothings, while studies that use models often do not address the above mentioned problems. For these reasons, this paper proposes a new approach to the classical modeling of D = f(t), where t is age (years), using the logarithmic transformation of the relative growth rate ln(1/D)(dD/dt) = ln f(D, A),where A is the asymptote of D based on the differential growth rate model of von Bertalanffy. High statistically significant adjustments for Cedrela odorata (ME = 65%, model efficiency, ME, an analogous to R² but for non-linear regressions), and Juglans neotropica (ME = 78%) were obtained and met all regression assumptions. These equations were integrated to obtain D = f(t) for both species, followed by self and independent validation. Based on these equations, different life history and silviculture traits were calculated for both species. This procedure does not appear to have been previously used in the study of tree growth.     

Evaluation of X-ray densitometry to identify tree-ring boundaries of two deciduous species from semi-arid forests in Brazil

The presence of visible annual rings in semi-arid tropical trees may allow the application of dendrochronological methods. However, variation in water availability may cause the formation of narrow, irregular ill- or non-defined annual rings hindering the correct dating of tree-ring series. We aimed to evaluate X-ray densitometry as a method to identify tree rings of two deciduous tree species from the Caatinga forest, a semi-arid region in the northeast of Brazil, and compare with two other methods commonly used in dendrochronology, the sliding-stage micrometer and image analysis. Xylem was observed macro- and microscopically and wood anatomical features were assessed in Aspidosperma pyrifolium and Poincianella pyramidalis trees. In both species, tree-ring boundaries were identified considering intra-annual density patterns and wood anatomical features. No significant differences in tree-ring widths were found among methods. X-ray densitometry measurements showed a positive correlation with the measurements obtained with image analysis and sliding-stage micrometer in A. pyrifolium and P. pyramidalis, revealing the high reliability of the methods used. However, inter-correlation of tree-ring width series showed differences in the accuracy of crossdating across measuring methods. The maximum, mean and minimum density values were species-dependent, with mean wood density of A. pyrifolium lower than P. pyramidalis. Our results highlight X-ray densitometry as an important and complementary tool to identify tree-rings boundaries in semi-arid tree species, especially in A. pyrifolium. Along with other measuring methods, it may provide higher accuracy in dendrochronological studies in semi-arid or subtropical environments.     

Contrasting growth forecasts across the geographical range of Scots pine due to altitudinal and latitudinal differences in climatic sensitivity

Ongoing changes in global climate are altering ecological conditions for many species. The consequences of such changes are typically most evident at the edge of a species’ geographical distribution, where differences in growth or population dynamics may result in range expansions or contractions. Understanding population responses to different climatic drivers along wide latitudinal and altitudinal gradients is necessary in order to gain a better understanding of plant responses to ongoing increases in global temperature and drought severity. We selected Scots pine (Pinus sylvestris L.) as a model species to explore growth responses to climatic variability (seasonal temperature and precipitation) over the last century through dendrochronological methods. We developed linear models based on age, climate and previous growth to forecast growth trends up to year 2100 using climatic predictions. Populations were located at the treeline across a latitudinal gradient covering the northern, central and southernmost populations and across an altitudinal gradient at the southern edge of the distribution (treeline, medium and lower elevations). Radial growth was maximal at medium altitude and treeline of the southernmost populations. Temperature was the main factor controlling growth variability along the gradients, although the timing and strength of climatic variables affecting growth shifted with latitude and altitude. Predictive models forecast a general increase in Scots pine growth at treeline across the latitudinal distribution, with southern populations increasing growth up to year 2050, when it stabilizes. The highest responsiveness appeared at central latitude, and moderate growth increase is projected at the northern limit. Contrastingly, the model forecasted growth declines at lowland‐southern populations, suggesting an upslope range displacement over the coming decades. Our results give insight into the geographical responses of tree species to climate change and demonstrate the importance of incorporating biogeographical variability into predictive models for an accurate prediction of species dynamics as climate changes.     

Climate Influences on the Radial Growth of Centrolobium microchaete,a Valuable Timber Species from the Tropical Dry Forests in Bolivia

In this study, we use tree‐ring records to determine the climate factors controlling the growth of Centrolobium microchaete, a high‐value timber species from the tropical dry Chiquitano forest in Bolivia. We present the first tree‐ring chronologies from C. microchaete for Concepción and Santa Mónica, Bolivia. Statistical analyses show that the chronologies are of good quality and have a significant common signal between trees. The growth of C. microchaete is strongly influenced by climatic conditions during late spring–early summer. Abundant precipitations concurrent with below‐average temperatures during this period of the year favor tree growth. Climate variations in late spring–early summer explain >40 percent of the total variance in C. microchaete tree growth during the interval 1943–2005. Minor differences in tree responses to climate recorded between the two stands may reflect differences in the extent of the dry season and in soil water capacity between sites. Although the chronologies cover the past 180 yr, adding samples from older individuals would permit the extension of these records further back in time. The strong climate dependency of tree growth suggests that predicted future climate changes in the region could have a significant influence on C. microchaete tree growth during the 21st century.     

Resolving ancient radiations: can complete plastid gene sets elucidate deep relationships among the tropical gingers (Zingiberales)?

Background and Aims

Zingiberales comprise a clade of eight tropical monocot families including approx. 2500 species and are hypothesized to have undergone an ancient, rapid radiation during the Cretaceous. Zingiberales display substantial variation in floral morphology, and several members are ecologically and economically important. Deep phylogenetic relationships among primary lineages of Zingiberales have proved difficult to resolve in previous studies, representing a key region of uncertainty in the monocot tree of life.

Methods

Next-generation sequencing was used to construct complete plastid gene sets for nine taxa of Zingiberales, which were added to five previously sequenced sets in an attempt to resolve deep relationships among families in the order. Variation in taxon sampling, process partition inclusion and partition model parameters were examined to assess their effects on topology and support.

Key Results

Codon-based likelihood analysis identified a strongly supported clade of ((Cannaceae, Marantaceae), (Costaceae, Zingiberaceae)), sister to (Musaceae, (Lowiaceae, Strelitziaceae)), collectively sister to Heliconiaceae. However, the deepest divergences in this phylogenetic analysis comprised short branches with weak support. Additionally, manipulation of matrices resulted in differing deep topologies in an unpredictable fashion. Alternative topology testing allowed statistical rejection of some of the topologies. Saturation fails to explain observed topological uncertainty and low support at the base of Zingiberales. Evidence for conflict among the plastid data was based on a support metric that accounts for conflicting resampled topologies.

Conclusions

Many relationships were resolved with robust support, but the paucity of character information supporting the deepest nodes and the existence of conflict suggest that plastid coding regions are insufficient to resolve and support the earliest divergences among families of Zingiberales. Whole plastomes will continue to be highly useful in plant phylogenetics, but the current study adds to a growing body of literature suggesting that they may not provide enough character information for resolving ancient, rapid radiations.     

The effect of substrate abundance in the vertical stratification of bromeliad epiphytes in a tropical dry forest (Mexico)

Diversity of epiphytes is associated with niche partitioning, through vertical strata and host preferences. However, abundance of substrate offered by hosts differs between vertical strata, misleading if epiphytes prefer a stratum or are randomly distributed. In a tropical dry forest of San Andres de la Cal Morelos, central Mexico, we tested the null hypothesis, that epiphytes follow the abundance of the substrate, rather than showing preference for a particular vertical stratum, and tested whether microclimatic variables, seed germination and seedling survival match with observed epiphyte distribution. Our data show that epiphytes could be randomly distributed inside some host; but in some host species, certain structures presented either a deficit or an excess of all, atmospheric, or tank epiphytes. In the hosts Bursera copallifera and Bursera glabrifolia, distribution of epiphytes was biased towards the upper strata, with a deficit of epiphytes in the lower strata. In Conzattia multiflora, Sapium macrocarpum and Ipomoea pauciflora, epiphyte distribution was biased towards the lower strata. Vertical gradation of light, seed germination and seedling survival did not generally match with epiphyte distribution and did not support the notion that the microclimatic gradient governs the vertical distribution of epiphytes. Our data indicate that vertical distribution of epiphytes in such tropical dry forests is mainly driven by the distribution of the structures, which apparently influence dispersion of the seeds and by the lifespan of branches, which allow the concentration of epiphytes in the stratum that optimizes seed capture and the clonal growth of epiphytes.     

Do riparian forest fragments provide ecosystem services or disservices in surrounding oil palm plantations?

Agricultural expansion across tropical regions is causing declines in biodiversity and altering ecological processes. However, in some tropical agricultural systems, conserving natural habitat can simultaneously protect threatened species and support important ecosystem services. Oil palm cultivation is expanding rapidly throughout the tropics but the extent to which non-crop habitat supports biodiversity and ecosystem services in these landscapes is poorly documented. We investigated whether riparian forest fragments (riparian reserves) provide a pest control service or increase pest activity (disservice) within oil palm dominated landscapes in Sabah, Malaysian Borneo. We assessed the activity of potential predators of pest herbivores using plasticine caterpillar mimics and quantified herbivory rates on oil palm fronds in areas with and without riparian reserves. We also manipulated the shape and colour of the mimics to assess the extent to which artificial pest mimics reflect a predatory response. The presence of riparian reserves increased the attack rate on mimics by arthropods, but not by birds. Our methodological study suggested attacks on artificial pest mimics provide a better indication of predatory activity for birds than for arthropod predators. Herbivory rates were also not significantly affected by the presence of a riparian reserve, but we found some evidence that herbivory rates may decrease as the size of riparian reserves increases. Overall, we conclude that riparian forest fragments of 30 – 50 m width on each side of the river are unlikely to provide a pest control service. Nevertheless, our results provide evidence that these riparian buffer strips do not increase the density of defoliating pests, which should reassure managers concerned about possible negative consequences of preserving riparian buffers.     

热带太平洋深海微生物抗肿瘤活性的初步研究

以４个人体癌细胞株为模型、利用四甲基偶氮唑盐（Methyl Thiazolyl blue Tetrazolium bromide,MTT）比色法和磺酰罗丹明（SulfoRhodamine B,SRB）染色法对55株来自于热带太平洋深海微生物（细菌和霉菌）的培养液的乙酸乙酯抽提物以及菌体的甲醇提取物进行了细胞毒活性筛选,并主要采用分子生物学方法鉴定了该批菌株. 结果表明,55株微生物发酵样品共１１０个提取物中,９０％样品表现出细胞毒活性;其中13株微生物的活性较强（提取物有效抑制浓度≤16μg/ml）,具有较好的开发应用前景。同时还发现,菌体中检测到的活性菌株数大于发酵液中检测到的活性菌株数, 细菌的筛选得率高于霉菌的筛选得率.鉴定结果显示, 50株微生物分属于21属、29种,其中１３个较高活性菌株来源于８个属。本文为我国深海微生物资源的开发利用,提供了探索性研究信息。