Insects and light interact to mediate vine colonization of fast growing Microberlinia bisulcata tree seedlings in gaps of an African rain forest

Vines thrive in lowland tropical forests, yet the biotic factors underlying their colonization of host tree seedlings and saplings remain surprisingly understudied. Insect herbivores presumably could influence this process, especially where disturbance has opened the canopy (i.e., gaps)—temporary areas of higher primary productivity favoring the recruitment of vines and trees and invertebrates in forests—but their impact on vine colonization has never been experimentally tested. Using data from an insect herbivore exclusion (mesh-netting cages) experiment conducted in an African rain forest (Korup, Cameroon), I logistically modeled the probability of vines colonizing seedlings of three co-dominant species (Microberlinia bisulcata vs. Tetraberlinia bifoliolata and T. korupensis) in paired shaded understory and sunny gap locations (41 blocks across 80 ha, starting n = 664 seedlings) in a 1–2-yr period (2008–2009). Vine colonization occurred almost exclusively in gaps, occurring on 16% of seedlings there. Excluding herbivores in gaps doubled colonization of the light-demanding and faster growing M. bisulcata but had negligible effects on the two shade-tolerant, slower growing and less palatable Tetraberlinia species, which together were twice as susceptible to vines under natural forest gap conditions (controls). When protected from herbivores in gaps, more light to individual seedlings strongly increased vine colonization of M. bisulcata whereas its well-lit control individuals supported significantly fewer vines. These results suggest vines preferably colonize taller seedlings, and because light-demanding tree species grow faster in height with more light, they are more prone to being colonized in gaps; however, insect herbivores can mediate this process by stunting fast growing individuals so that colonization rates becomes more similar between co-occurring slow and fast growing tree species. Further influencing this process might be associational resistance or susceptibility to herbivores linked to host species’ leaf traits conferring shade-tolerant ability as seedlings or saplings. A richer understanding of how vines differentially influence forest regeneration and species composition may come from investigating vine–tree–herbivore interactions across light gradients, ideally via long-term studies and intercontinental comparisons. Abstract in French is available with online material.     

REV1-Polζ maintains the viability of homologous recombination-deficient cancer cells through mutagenic repair of PRIMPOL-dependent ssDNA gaps

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Energy gaps of graphene clusters: the first-principles calculations based on high-throughput screening

Abstract

With the enumeration of the triangular lattice fragments, we have systematically investigated the graphene clusters (C_nH_m, n = 14 – 24) with various sizes and shapes, whose structural stabilities and electronic properties are studied by the Hückel molecular orbital (HMO) method and the first-principles calculation. According to the formation energies, we show the structural stabilities of the clusters are closely related to the shape and size, as well as the chemical potential of hydrogen. The energy gaps obtained from the HMO method are in the same trend with the ones calculated by the first-principles calculations, indicating the effective screening of the gap minimum and maximum in a fast speed. There is a general decreasing of the energy gaps with the size increment due to the quantum confinement, meanwhile, the gaps are also highly dependent on the shape of the clusters for those with the same number of carbon atom.     

Gap-scale disturbance processes in secondary hardwood stands on the Cumberland Plateau,Tennessee, USA

Disturbance regimes in many temperate, old growth forests are characterized by gap-scale events. However, prior to a complex stage of development, canopy gaps may still serve as mechanisms for canopy tree replacement and stand structural changes associated with older forests. We investigated 40 canopy gaps in secondary hardwood stands on the Cumberland Plateau in Tennessee to analyze gap-scale disturbance processes in developing forests. Gap origin, age, land fraction, size, shape, orientation, and gap maker characteristics were documented to investigate gap formation mechanisms and physical gap attributes. We also quantified density and diversity within gaps, gap closure, and gap-phase replacement to examine the influence of localized disturbances on forest development. The majority of canopy gaps were single-treefall events caused by uprooted or snapped stems. The fraction of the forest in canopy gaps was within the range reported from old growth remnants throughout the region. However, gap size was smaller in the developing stands, indicating that secondary forests contain a higher density of smaller gaps. The majority of canopy gaps were projected to close by lateral crown expansion rather than height growth of subcanopy individuals. However, canopy gaps still provided a means for understory trees to recruit to larger size classes. This process may allow overtopped trees to reach intermediate positions, and eventually the canopy, after future disturbance events. Over half of the trees located in true gaps with intermediate crown classifications were Acer saccharum, A. rubrum, or Liriodendron tulipifera. Because the gaps were relatively small and close by lateral branch growth of perimeter trees, the most shade-tolerant A. saccharum has the greatest probability of becoming dominant in the canopy under the current disturbance regime. Half of the gap maker trees removed from the canopy were Quercus; however, Acer species are the most probable replacement trees. These data indicate that canopy gaps are important drivers of forest change prior to a complex stage of development. Even in relatively young forests, gaps provide the mechanisms for stands to develop a complex structure, and may be used to explain patterns of shifting species composition in secondary forests of eastern North America.     

An experimental test of density- and distant-dependent recruitment of mahogany (Swietenia macrophylla) in southeastern Amazonia

According to the Janzen–Connell model, high mortality of seeds and seedlings in proximity to conspecific adults can help maintain species diversity in tropical forests. Using a natural population of big-leaf mahogany (Swietenia macrophylla King), we tested the model’s mechanism by examining seed predation and juvenile recruitment in the forest understory and in treefall gaps in the vicinity of both isolated and clumped adults. We used tethered seeds placed in three types of exclosure plots: (1) complete access to seeds, (2) semi-access (access by small-sized seed predators) and (3) no access (all mammals excluded). Exclosure treatments were applied within the understory (both near and far from adults) and in gaps at eight fruiting adults in the late dry season (2001) and scored ten months later. Significantly more seeds were removed in canopy gaps near clumped adults than at isolated adults; otherwise, none of the treatment factors significantly influenced seed predation. In contrast, understory juvenile recruitment was significantly enhanced by distance from adults and was twice as high at isolated than clumped adults, providing novel support for the Janzen–Connell mechanism. No-access exclosures protected significantly more seeds than semi- and full-access exclosures, implicating small mammals in seed losses. Across the eight trees, juvenile recruitment in the no-access exclosures decreased significantly with conspecific adult densities, implicating non-mammalian density-responsive factor(s) in mortality following germination; likely a known specialist invertebrate herbivore. When all treatments were combined, conspecific adult basal area and total DBH explained 72 and 90% of variation in overall juvenile recruitment, respectively. Collectively, these results indicate that Janzen–Connell effects can operate in S. macrophylla, especially during the seed-to-seedling transition, and will likely reduce recruitment in areas of high conspecific densities. They also suggest that further research into the causes of density-dependence in tropical trees should investigate mortality agents following germination.     

Multi-residue gaps,a class of molecular characters with exceptional reliability for phylogenetic analyses

Qualitative methods of obtaining phylogenies seek distinct classes of characters that collectively are common, yet individually are insufficiently improbable that they provide reliable indications of monophyly. Multi-residue gaps (insertions or deletions) in DNA and protein sequences are easily recognised and are available in diverse organisms and loci. They are likely to experience few homoplasies, because these require two separate events to be matched in both starting position and length. Two tests of the ability of multi-residue gaps to recognise clades are conducted. (1) Among the 10.76 kb of noncoding DNA sequences from the ψη-globin region of 5 primates, there are 7 analysable multi-nucleotide gaps. These provide a corroborated and noncontradictory, fully resolved gene tree of hominoids. (2) Among the 35 amino acid sequences of globin chains available in 1978, there are 9 nonoverlapping multi-amino acid gaps. These indicate 8 noncontradictory divisions that agree with recognised taxa and gene categories. In the 412 realigned globin sequences available in 1989, 8 of the gaps are still analysable. These show a maximum of two homoplasies among the 8 × 412 = 3296 species-characters. Multi-residue gaps have a high potential to indicate clades. They could be used to reduce the computing labour required in a quantitative study or pooled from different data sets to examine particularly important or difficult phylogenetic questions.     

Loss of nuclear DNA ligase III reverts PARP inhibitor resistance in BRCA1/53BP1 double-deficient cells by exposing ssDNA gaps

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