The effects of a typhoon on Japanese warm temperate rainforests

A powerful typhoon (Typhoon No. 13) affected stands of primary warm temperate rainforest in Yakushima, southern Japan, in 1993. Censuses in three sites 1–5 months after the typhoon showed low levels of mortality resulting from the typhoon (0.4–3.0% of stems). Stems killed by the typhoon were generally larger than surviving stems. Among surviving stems there were generally low levels of damage (e.g. 0.5–1.3% of surviving stems lost crowns) and not all damage was widespread (e.g. defoliation was apparent only in one of three sites). The sizes of uprooted stems, stems that lost crowns and relatively undamaged stems were not different. Different species appeared to be damaged in different ways at different sites. Damage was most evident in higher altitude seaward sites but gap formation was more frequent in lower altitude sites near valley floors. After the typhoon the resultant gap area occupied 9.4% of one site and 8.6% of another, which is greater than that before the typhoon. Fresh sprouts were found on 17.35% of 2161 stems after the typhoon, including many apparently undamaged stems as well as those that were damaged. Species which sprouted most frequently were those that regenerate by seed least frequently in these forests; these species may maintain their relative abundance in part by sprouting. Most tree species in these forests may be relatively resistant to typhoons and there may be more opportunities for their regeneration following gap formation caused by the typhoon.     

中国大陆沿海水鸟栖息地保护优先区及空缺分析

中国大陆沿海湿地是东亚-澳大利西亚候鸟迁徙的重要停歇地,自然湿地丧失与退化已经严重威胁到水鸟生物多样性的稳定性,急需开展物种及其栖息地的保护工作。识别中国大陆沿海水鸟保护优先区,针对保护优先区进行保护优先等级划分,确定目前尚存的保护空缺,是针对性开展水鸟栖息地保护的前提。以中国大陆沿海11省、自治区、直辖市沿岸湿地为研究区,整合鸟类网站、水鸟调查报告和文献中的水鸟调查数据,采用热点分析方法,确定水鸟保护优先区,将每个地块上满足水鸟保护优先区识别标准的物种数量占所有地块中满足标准的物种数量最大值的比例划分成0.5≤P_i≤1、 0.25≤P_i<0.5、0i<0.25三个区间,确定对应的I类、II类和III类水鸟保护优先区保护优先等级;结合国家自然保护地名录,确定水鸟保护优先区保护空缺。结果显示:共有65块中国大陆沿海水鸟保护优先区,记录到满足热点分析标准的水鸟物种共76种,其中受胁物种18种。水鸟保护优先区保护优先等级属于I、II、III类的分别有8块、10块、47块,且水鸟保护优先区保护优先等级属于I...     

Loss of oak dominance in dry-mesic deciduous forests predicted by gap capture methods

Gap capture methods predict future forest canopy species composition from the tallest trees growing in canopy gaps rather than from random samples of shaded understory trees. We used gap capture methods and a simulation approach to forecast canopy composition in three old oak forests (Quercus spp.) on dry-mesic sites in southern Wisconsin, USA. In the simulation, a gap sapling is considered successful if it exceeds a threshold height of 13–17 m (height of maximum crown width of canopy trees) before its crown center can be overtopped by lateral crown growth of mature trees. The composition of both the tallest gap trees and simulated gap captures suggests that 68–90% of the next generation of canopy trees in the stands will consist of non-Quercus species, particularly Ulmus rubra, Carya ovata and Prunus serotina. Quercus species will probably remain as a lesser stand component, with Quercus alba and Quercus rubra predicted to comprise about 19% of successful gap trees across the three stands. Several methods of predicting future canopy composition gave similar results, probably because no gap opportunist species were present in these stands and there was an even distribution of species among height strata in gaps. Gap trees of competing species already average 11–13 m tall, and mean expected time for these trees to reach full canopy height is only 19 years. For these reasons, we suggest that dominance will shift from oaks to other species, even though late successional species (e.g., Acer and Tilia) are not presently common in the understories of these stands.     

Impacts of intensifying or expanding cereal cropping in sub‐Saharan Africa on greenhouse gas emissions and food security

Cropping is responsible for substantial emissions of greenhouse gasses (GHGs) worldwide through the use of fertilizers and through expansion of agricultural land and associated carbon losses. Especially in sub‐Saharan Africa (SSA), GHG emissions from these processes might increase steeply in coming decades, due to tripling demand for food until 2050 to match the steep population growth. This study assesses the impact of achieving cereal self‐sufficiency by the year 2050 for 10 SSA countries on GHG emissions related to different scenarios of increasing cereal production, ranging from intensifying production to agricultural area expansion. We also assessed different nutrient management variants in the intensification. Our analysis revealed that irrespective of intensification or extensification, GHG emissions of the 10 countries jointly are at least 50% higher in 2050 than in 2015. Intensification will come, depending on the nutrient use efficiency achieved, with large increases in nutrient inputs and associated GHG emissions. However, matching food demand through conversion of forest and grasslands to cereal area likely results in much higher GHG emissions. Moreover, many countries lack enough suitable land for cereal expansion to match food demand. In addition, we analysed the uncertainty in our GHG estimates and found that it is caused primarily by uncertainty in the IPCC Tier 1 coefficient for direct N₂O emissions, and by the agronomic nitrogen use efficiency (N‐AE). In conclusion, intensification scenarios are clearly superior to expansion scenarios in terms of climate change mitigation, but only if current N‐AE is increased to levels commonly achieved in, for example, the United States, and which have been demonstrated to be feasible in some locations in SSA. As such, intensifying cereal production with good agronomy and nutrient management is essential to moderate inevitable increases in GHG emissions. Sustainably increasing crop production in SSA is therefore a daunting challenge in the coming decades.     

Effects of Treefall Gap Disturbances on Ant Assemblages in a Tropical Montane Cloud Forest

The study of gap dynamics and the effects of gaps on diversity has been at the center of tropical ecology for decades. While most studies have focused on the responses of plant species and communities to gap formation, in this study, we consider the effects of treefall gap disturbances on leaf litter ant assemblages in a Neotropical montane cloud forest. We sampled leaf litter ant assemblages and estimated a suite of abiotic parameters in 12 large (>80‐m²) treefall gaps across a chronosequence and in 12 paired adjacent intact forest sites in the Monteverde Cloud Forest Preserve in Costa Rica. No species were more common in gaps than in intact forests, and in fact, species that were common in gaps were also among the most common in forests. The Chao2 estimate of species richness, however, was higher in gap sites than in intact forest sites. In addition, ant assemblages in gap sites did not become more similar to those in adjacent intact sites as gaps aged. In contrast to other studies, our work demonstrates that ant assemblages in the Monteverde Cloud Forest Preserve are weakly affected by the formation of treefall gaps. Together, these results indicate that treefall gap dynamics probably play little role in promoting ant diversity at more regional scales, or coexistence among species at more local scales.     

Species delimitation of Chinese hop‐hornbeams based on molecular and morphological evidence

Species delimitation through which infers species boundaries is emerging as a major work in modern systematics. Hop‐hornbeam species in Ostrya (Betulaceae) are well known for their hard and heavy woods. Five species were described in China and their interspecific delimitations remain unclear. In this study, we firstly explored their distributions in all recorded field sites distributed in China. We then selected 110 samples from 22 natural populations of five species from this genus and one type specimen of O. yunnanensis, for molecular barcoding analyses. We sequenced four chloroplast (cp) DNA fragments (trnH–psbA, trnL–trnF, rps16, and trnG) and the nuclear internal transcribed spacer (ITS) region for all samples. Sequence variations of Ostrya from four cpDNA fragments identified three groups that showed no correspondence to any morphological delimitation because of the incomplete lineage sorting and/or possible interspecific introgression in the history. However, phylogenetic analyses of ITS sequence variations discerned four species, O. japonica, O. rehderiana, O. trichocarpa, and O. multinervis while O. yunnanensis nested within O. multinervis. Morphological clustering also discerned four species and showed the complete consistency with molecular evidence. Moreover, our phylogenetic analyses‐based ITS sequence variations suggested that O. trichocarpa comprised an isolated lineage different from the other Eurasian ones. Based on these results, hop‐hornbeams in China should be treated as four separate species. Our results further highlight the importance of ITS sequence variations in delimitating and discerning the closely related species in plants.     

绒毛细胞与新生儿脐带血和成人外周血染色体断裂和裂隙的比较

绒毛用直接法制片,新生儿脐带血和成人外周血用半微量全血法制片。对绒毛、脐带血和外周血染色体的断裂和裂隙进行比较。结果表明,绒毛细胞的染色体断裂和裂隙比新生儿脐带血和成人外周血的显著增高,而新生儿脐带血和成人外周血之间则无明显差异。 Abstract:Chromosome breaks and gaps in chorionic villus cells and lymphocytes from newborn and abult were compared.The number of chromosome breaks and gaps in chorionic villus cells was higher than that in newborn and adult lymphocytes,This might be one of the reasons for higher chromosome aberration rate in chorionic villus.     

DEMOGRAPHIC GENETICS OF A PIONEER TROPICAL TREE SPECIES: PATCH DYNAMICS,SEED DISPERSAL,AND SEED BANKS

We consider whether changes in population-genetic structure through the life cycle of Cecropia obtusifolia, a tropical pioneer tree, reflect its gap-dependent demography and the role of evolutionary processes that are important for this species. We asked whether the spatial scale at which population-genetic subdivision occurs corresponds to the scale of habitat patchiness created by gap dynamics; whether patterns of seed dispersal and storage in the soil affect spatial genetic patterns; and whether spatial genetic patterns change through the species life cycle. We estimated Wright's F-statistics for six successive life-history stages for individuals grouped into subpopulations according to occurrence in natural gaps, physical proximity, or occurrence within large quadrats. For each life stage, F_ST-statistics were significantly higher when individuals were grouped by gaps, although concordant patterns across life stages for the three grouping methods were obtained. This supports the hypothesis that patchy recruitment in gaps or among-gap heterogeneity influences the species' genetic structure. F-statistics of seeds collected from females before dispersal (tree seeds), seed-rain seeds, soil seeds, seedlings, juveniles, and adults grouped by gaps, were, respectively: F_IT = 0.004, 0.160, 0.121, 0.091, –0.0002, –0.081; F_IS = –0.032, 0.124, 0.118, 0.029, –0.016, –0.083; and F_ST = 0.035, 0.041, 0.003, 0.063, 0.015, 0.002. Spatial genetic differentiation in rain seeds was not significantly lower than that of tree seeds. The loss of genetic structure in the soil seed bank, relative to that found in the seed rain may be due to sampling artifacts, but alternative explanations, such as microsite selection or temporal Wahlund effect are also discussed. If structure among soil seeds is unbiased, the peak in seedling F_ST may be due to microsite selection. F_IS of seeds in the rain and soil were significantly greater than zero. A Wahlund effect is the most likely cause of these positive F_IS values. Such fine-scale substructuring could be caused by correlated seed deposition by frugivores. The decrease in F_IS from seedlings to adults could result from loss of fine-scale genetic structure during stand thinning or from selection.     

Replication gaps are a key determinant of PARP inhibitor synthetic lethality with BRCA deficiency

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Density functional study of the electronic and optical properties of fluorene-thieno[3,2-b]thiophene-based conjugated copolymers

Quantum mechanical techniques are applied to investigate a family of π-conjugated copolymers: poly(9,9′-dimethylfluorene-alt-thiophene) (PFT), poly(9,9′-dimethylfluorene-alt-thieno[3,2-b]-thiophene) (PFTT), poly(9,9′-dimethylfluorene-alt-bithiophene) (PFT2), and poly(9,9′-dimethylfluorene-alt-α,α′-bisthieno[3,2-b]-thiophene) (PFTT2). Linear extrapolation is employed to obtain polymers' properties from oligomer calculations. That is, the HOMO–LUMO gaps (Δ_H–Ls), band gaps (E _g s), ionisation potentials and electron affinities of the copolymers are obtained by plotting the corresponding quantities of the oligomers as a function of the inverse chain length (1/n) and extrapolating them to infinite chain length. The electronic properties of the neutral, positive and negative oligomers are determined using the density functional theory (DFT) at B3LYP/6-31G* approximation. The lowest singlet excitation energies of the oligomers of PFT, PFTT, PFT2, and PFTT2 are also determined with the use of the time-dependent DFT again at B3LYP/6-31G* approximation. Comparisons are made with experimental values when possible.