Effects of experimental manipulation of light and nutrients on establishment of seedlings of native and invasive woody species in Long Island,NY forests

While earlier studies on the process of invasion often focused on single factors or on the general explanation of ‘disturbance,’ recent work has attempted to move towards a more mechanistic understanding of the factors that promote plant community invasion. Manipulative experiments provide a means for discerning causal relationships and interactive effects of environmental factors in promoting invasion; such experiments have been conducted in a number of grassland and shrub ecosystems. This study extends multifactor manipulative experiments into forest communities to compare factors influencing early seedling establishment for native and invasive woody plants. In Long Island, NY, invasion patterns are correlated with forest community type (pine barrens or hardwood), light availability, and soil N and Ca. We conducted manipulative field experiments in two different years to determine the relative importance and interaction of experimental gaps and N and Ca addition in pine barrens and hardwood forests in promoting invasion. We used seedlings of seven common native and invasive species in the first experiment, and 16 native and invasive species paired phylogenetically in the second experiment. Light had the strongest effect on plant growth; all plants grew more in gaps. We found no difference in the average growth rates of native and invasive species. Invasives responded more to high resources than did natives, with highest relative growth rates in gaps in the more fertile soils of the hardwood forests. Opportunities for invasion may differ from year to year, with differential success of invaders only in some years and under some environmental conditions. Clearly, to understand the complex interactions between resources and invasion in forests will require many manipulative experiments across a range of environments and using suites of invasive and native species. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Understory development in canopy gaps of pine and pine-hardwood forests of the upper Coastal Plain of Virginia

Canopygaps are important in establishing a pool of natural regeneration in manytemperate forest ecosystems. Information on the role of gaps in loblolly pine(Pinus taeda L.) and pine-hardwood foreststands in the southeastern Coastal Plain of the United States is lacking.Accordingly, 12 small canopy gaps in mature pine and pine-hardwood standsin Petersburg National Battlefield, Virginia, were studied. Loblolly pineregeneration was significantly more abundant in canopy gaps as compared to theadjacent forest in both forest cover types. In four stands dominated by loblollypine, there were 750 saplings/ha in the gaps compared to only 125saplings/ha in the adjacent forest. Pine saplings dominated the regenerationspectrum in the gaps in the pine stands, while red maple (Acerrubrum L.) was more important in the adjacent forest. In fourpine-hardwood stands, regeneration in both the gaps and adjacent forestwas dominated by sweetgum (Liquidambar styracifluaL.) with importance values of 27% and 28%, respectively.There were no loblolly pine seedlings in the adjacent forest, but an average 313per ha in the gaps of the pine-hardwood stands. Within thegaps in both cover types, loblolly pine saplings were lower in stature thancompeting hardwood stems, leading to the conclusion that the gaps may form atemporary pool of pine regeneration. Without further stand disturbance, theprocess of gap closure may reduce the pine component to a secondary status, orperhaps eliminate it altogether.     

Gap creation and regenerative processes driving diversity and structure of mangrove ecosystems

Turnover within both mangrove and terrestrial forests is driven by standdevelopment in conjunction with factors influencing tree death andreplacement at various temporal and spatial scales. Development interrestrial forests appears comparable with that in mangroves but turnoverseems to differ considerably between these broad forest types. The mostimportant difference is in the character of small forest gaps. Gaps arecommon in terrestrial forests but those in mangroves rarely involve falls oflarge older trees in the first instance. Instead, mangrove trees usually diestanding in small clusters of mixed age cohorts. Identifying a common causefor gap creation in mangroves might be important towards understandingwhat drives forest turnover but there is a greater need to quantify thisprocess. Small-scale disturbance in mangrove forests is poorly quantified butpreliminary evidence implies that its' importance may have been greatlyunder-estimated. Based on available observations, a conceptual model ofmangrove forest development and gap regeneration is proposed. The modelhelps explain the peculiar characteristics and structure of mangrove forestsand how these forests might respond to changing environmental conditionsand disturbance at various landscape scales.     

Canopy gaps are sites of reduced belowground plant competition in a productive old field

Whether small gaps in the aboveground vegetation of productive oldfields correspond to gaps in belowground plant biomass, and whether suchroot gaps result in a reduction of competition for soil resourcesis not known. Our study in an abandoned hayfield shows that root biomass withinsmall gaps (< 0.50 m diam) is 20% of that found withinintact vegetation, similar to the findings for shoot biomass. Associated withthe decrease in root biomass was a 25% reduction in the intensity ofbelowground competition within gaps compared to the surrounding matrixvegetation. These differences could not be attributed to variation in soilproperties, as gap and matrix soils did not differ in any of the physical orchemical properties measured. These results indicate that the increased plantgrowth commonly observed within gaps may be partly due to reduced belowgroundcompetition, independent of any advantage gained from increased lightavailability. By providing areas of low belowground competitive intensity, gapsin this field could allow poor belowground competitors to exist with in oldfields,thusincreasing community diversity.     

Tree species distribution in canopy gaps and mature forest in an area of cloud forest of the Ibitipoca Range,south-eastern Brazil

The tree community of both canopy gaps and mature forest was surveyed in a 5 ha plot of cloud forest in the Ibitipoca Range, south-eastern Brazil, aiming at: (a) comparing the tree community structure of canopy gaps with that of three strata of the mature forest, and (b) relating the tree community structure of canopy gaps with environmental and biotic variables. All saplings of canopy trees with 1–5 m of height established in 31 canopy gaps found within the plot were identified and measured. Mature forest trees with dbh 3 cm were sampled in four 40×40 quadrats laid on the four soil sites recognised in the local soil catena. All surveyed trees were identified, measured and distributed into three forest strata: understorey (<5 m of height), sub-canopy (5.1–15 m) and canopy (15.1–30 m). The following variables were obtained for each gap: mode of formation, age, soil site, slope grade, size, canopy openness and abundance of bamboos and lianas. A detrended correspondence analysis indicated that the tree community structure of gaps in all soil sites was more similar to that of the mature forest understorey, suggesting that the bank of immatures plays an important role in rebuilding the forest canopy and that gap phases may be important for understorey shade-tolerant species. There was evidence of gap-dependence for establishment for only one canopy tree species. Both canonical correspondence analysis and correlation analysis demonstrated for a number of tree species that the distribution of their saplings in canopy gaps was significantly correlated with two variables: soil site and canopy openness. The future forest structure at each gap is probably highly influenced by both the present structure of the adjacent mature forest and the gap creation event.     

Canopy manipulation as a tool for restoring mature forest conifers under an early‐successional angiosperm canopy

Low‐light environments in early‐successional forests that have established after abandonment of farming often restrict the establishment of later successional species resulting in an arrested succession. This 6‐year study tested the potential of different canopy manipulations to facilitate the establishment of a light‐demanding canopy tree species, tōtara (Podocarpus totara), within a regenerating kānuka (Kunzea robusta) stand. Results highlighted the effectiveness of artificial gaps over other methods (ring‐barking and edge‐planting) in accelerating the growth of planted tōtara. Seedlings under gaps grew consistently taller and faster over time indicative of an improved understorey light environment. Ring‐barking did not have a significant effect on tōtara growth because only a portion of the treated trees died, and after 6 years dead trees remained standing with intact branches resulting in insignificant increases in light transmission. At the forest edge sites, tōtara growth was highly variable. Although some seedlings grew as tall as in the gaps, others did not. Survival was also lower in the edge sites than in other treatments, which was likely due to enhanced herbivory from ungulates which impacted some plants at these sites. Gap creation is likely to be an important tool for restoring late‐successional canopy species in regenerating stands both through providing ideal sites for the growth of light‐demanding species such as tōtara and through natural establishment of other future canopy trees into the gaps.     

The future of protein biomarker research in type 2 diabetes mellitus

Introduction: The onset of type 2 diabetes mellitus (T2DM) is strongly associated with obesity and subsequent perturbations in immuno-metabolic responses. To understand the complexity of these systemic changes and better monitor the health status of people at risk, validated clinical biomarkers are needed. Omics technologies are increasingly applied to measure the interplay of genes, proteins and metabolites in biological systems, which is imperative in understanding molecular mechanisms of disease and selecting the best possible molecular biomarkers for clinical use.

Areas covered: This review describes the complex onset of T2DM, the contribution of obesity and adipose tissue inflammation to the T2DM disease mechanism, and the output of current biomarker strategies. A new biomarker approach is described that combines published and new self-generated data to merge multiple -omes (i.e. genome, proteome, metabolome etc.) toward understanding of mechanism of disease on the individual level and design multiparameter biomarker panels that drive significant impacts on personalized healthcare.

Expert commentary: We here propose an approach to use cross-omics analyses to contextualize published biomarker data and better understand molecular mechanisms of health and disease. This will improve the current and future innovation gaps in translation of discovered putative biomarkers to clinically applicable biomarker tests.     

Fossil ghost ranges are most common in some of the oldest and some of the youngest strata

Biologists routinely compare inferences about the order of evolutionary branching (phylogeny) with the order in which groups appear in the fossil record (stratigraphy). Where they conflict, ghost ranges are inferred: intervals of geological time where a fossil lineage should exist, but for which there is no direct evidence. The presence of very numerous and/or extensive ghost ranges is often believed to imply spurious phylogenies or a misleadingly patchy fossil record, or both. It has usually been assumed that the frequency of ghost ranges should increase with the age of rocks. Previous studies measuring ghost ranges for whole trees in just a small number of temporal bins have found no significant increase with antiquity. This study uses a much higher resolution approach to investigate the gappiness implied by 1,000 animal and plant cladograms over 77 series and stages of the Phanerozoic. It demonstrates that ghost ranges are indeed relatively common in some of the oldest strata. Surprisingly, however, ghost ranges are also relatively common in some of the youngest, fossil-rich rocks. This pattern results from the interplay between several complex factors and is not a simple function of the completeness of the fossil record. The Early Palaeozoic record is likely to be less organismically and stratigraphically complete, and its fossils -- many of which are invertebrates-may be more difficult to analyse cladistically. The Late Cenozoic is subject to the pull of the Recent, but this accounts only partially for the increased gappiness in the younger strata.     

Three‐dimensional stratification pattern in an old‐growth lowland forest: How does height in canopy and season influence temperate bat activity?

The study of animal–habitat interactions is of primary importance for the formulation of conservation recommendations. Flying, gliding, and climbing animals have the ability to exploit their habitat in a three‐dimensional way, and the vertical canopy structure in forests plays an essential role for habitat suitability. Forest bats as flying mammals may seasonally shift their microhabitat use due to differing energy demands or changing prey availability, but the patterns are not well understood. We investigated three‐dimensional and seasonal habitat use by insectivorous bats in a temperate lowland old‐growth forest, the Belovezhskaya Pushcha in Belarus. We acoustically sampled broadleaved and mixed coniferous plots in the forest interior and in gaps in three heights during two reproductive periods (pregnancy/lactation vs. postlactation). In canopy gaps, vertical stratification in bat activity was less pronounced than in the forest interior. Vertical activity patterns differed among species. The upper canopy levels were important foraging habitats for the open‐space forager guild and for some edge‐space foragers like the Barbastelle bat Barbastella barbastellus and the soprano pipistrelle Pipistrellus pygmaeus. Myotis species had highest activity levels near the ground in forest gaps. Moreover, we found species‐dependent seasonal microhabitat shifts. Generally, all species and species groups considered except Myotis species showed higher activity levels during postlactation. Myotis species tended toward higher activity in the forest interior during postlactation. P. pygmaeus switched from high activity levels in the upper canopy during pregnancy and lactation to high activity levels near the ground during postlactation. We conclude that a full comprehension of forest bat habitat use is only possible when height in canopy and seasonal patterns are considered.     

Small Gap Creation in Belizean Mangrove Forests by a Wood–Boring Insect1

We investigated the role of wood-boring insects in the creation of light gaps within mangrove forests. We compared the frequency of gaps caused by wood borers to other gap-forming processes and characterized the physical attributes of light gaps in mangrove forests on small islands in Belize. Methods of quantifying light gaps included aerial photography, ground surveys, and experimental plots. Small light gaps (≤12 m²) were very common in Rhizophom mangle fringe, comprising almost 22 percent of these forests. Rhizophora mangle gaps were smaller than gaps in Avicennia germinans forests. In R. mangle forests, gaps were caused by branch death, and in A. germinans forests, gaps were caused primarily by downed trees. More than 91 percent of the gap-forming branches and boles in the R. mangle fringe were killed by a wood-boring cerambycid beetle, Elaphidion mimeticum, indicating that it is the major cause of small-scale disturbances in these forests. No trees or branches in the A. germinans forest were attacked by this beetle. In R. mangle forests, small gaps had significantly higher light levels and soil temperatures than areas under the closed canopy; however, soil conditions for sulfide concentrations, porewater salinity, and redox potentials were similar in small gaps and under the closed canopy. Survival of R. mangle, A. germinans, and Laguncularia racemosa seedlings was also higher inside these small gaps, indicating their importance in regeneration of mangrove forests. Feeding by wood borers is thus an important type of indirect herbivory in mangrove forests, with a critical role in ecological processes such as gap dynamics.