Patch and landscape features drive fire regime in a Brazilian flammable ecosystem

The flammable ecosystems are evolutionary dependent on the periodic action of fire. Several environmental factors, both at local and landscape scales, can affect fire regimes in these ecosystems differently. Here, we evaluated the influence of local and landscape features on two parameters of the fire regime of a flammable protected area of the Brazilian savanna: The Chapada Diamantina National Park. We characterized both fire frequency and the time since the last fire, from 1990 to 2019 and measured five environmental predictors (tree canopy cover, altitude, water surface, predominant land use and distance to the nearest municipality). We used Generalized Additive Models for Location, Scale and Shape (GAMLSS) to assess the influence of environmental predictors on the measured fire regime parameters. We found a large interannual variation in the total annual area burned in the studied period. In total, 68 % of the protected area (1030 km²) was burned at least once and 32 % (486 km²) was unaffected by fires during the study period. Predominant land use, distance to the nearest municipality, tree cover and the interaction between tree cover and altitude were negatively related to fire frequency, while the water surface and altitude positively influenced fire frequency in the park. Compared to older fires, recent fires occurred in landscapes at lower altitudes and with lower tree cover. Our results demonstrate that the fire frequency and time since the last fire were highly variable across the park, reflecting the strong influence of landscape heterogeneity on their parameters.     

High-fidelity representation of climate variations by Amburana cearensis tree-ring chronologies across a tropical forest transition in South America

Numerous ring-width chronologies from different species have recently been developed in diverse tropical forests across South America. However, the temporal and spatial climate signals in these tropical chronologies is less well known. In this work, annual growth rings of Amburana cearensis, a widely distributed tropical tree species, were employed to estimate temporal and spatial patterns of climate variability in the transition from the dry Chiquitano (16–17°S) to the humid Guarayos-southern Amazon (14–15°S) forests. Four well-replicated chronologies (16–21 trees, 22–28 radii) of A. cearensis were compared with temperature and precipitation records available in the region. The interannual variations in all four A. cearensis tree-ring chronologies are positively correlated with precipitation and negatively with temperature during the late dry-early wet season, the classic moisture response seen widely in trees from dry tropical and temperate forests worldwide. However, the chronologies from the dry Chiquitano forests of southern Bolivia reflect the regional reduction in precipitation during recent decades, while the chronologies from the tropical lowland moist forests in the north capture the recent increase in precipitation in the southern Amazon basin. These results indicate that A. cearensis tree growth is not only sensitive to the moisture balance of the growing season, it can also record subtle differences in regional precipitation trends across the dry to humid forest transition. Comparisons with previously developed Centrolobium microchaete chronologies in the region reveal a substantial common signal between chronologies in similar environments, suggesting that regional differences in climate are a major drivers of tree growth along the precipitation gradient. The difficulty of finding A. cearensis trees over 150-years old is the main limitation involved in the paleoclimate application of this species. The expansion of monocultures and intensive cattle ranching in the South American tropics are contributing to the loss of these old growth A. cearensis trees and the valuable records of climate variability and climate change that they contain.     

Patterns of daily stem growth in different tree species in a warm-temperate forest in northern China

Radial growth in trees responds to environmental changes in various ways ranging from immediate to hysteretic responses. However, species-specific tree radial growth patterns and their responses to short-term weather changes are not fully understood. Here, the daily stem radial changes (SRCs) in four common tree species, linden (Tilia mongolica), birch (Betula dahurica), oak (Quercus wutaishanica) and larch (Larix principis-rupprechtii), were monitored with high-resolution point dendrometers during the main growing seasons in 2017–2019 on Dongling Mountain, northern China. The SRC was differentiated into tree water deficit-induced stem shrinkage (TWD) and growth-induced irreversible stem expansion (GRO) to evaluate species-specific responses to weather variables and short-term drought events. We found that the TWD and GRO of the four species were significantly different. The TWD was influenced primarily by the vapor pressure deficit (VPD), whereas the GRO was influenced primarily by precipitation (P). In linden and birch, a larger proportion of the GRO occurred at higher air temperature (T_mean) and VPD values; in contrast, the range of these changes was lower in oak and larch. With the increased durations of drought periods, oak and larch experienced large and rapid increases in TWD, whereas birch and linden showed small and slow increases. These results indicate that oak and larch would be sensitive to warmer and drier weather conditions predicted for the future, while linden and birch would have a conservative growth strategy. Our results provide further insights into the physiology of these four tree species and allow us to better predict the growth response of forest dynamics under climate change.     

麻雀幼鸟和成鸟逃逸距离的比较

逃逸是鸟类常用的反捕食手段。自然选择会优化鸟类的逃逸距离,以便在躲避被捕食风险和保持能量之间做出权衡。理论模型预测动物个体可依据期望寿命来调整自身的行为：期望寿命短的个体倾向于风险偏好,即逃逸距离短;而期望寿命长的个体倾向于风险回避,即逃逸距离长。同时,逃逸距离还受到外部因素（如人为干扰强度、鸟类群体大小）的影响。本研究在北京城区收集了麻雀（Passer montanus）145只成鸟和75只幼鸟的逃逸距离数据,发现麻雀成鸟比幼鸟有着更长的逃逸距离,且成鸟更可能是群体中首先逃逸的个体。此外,研究发现麻雀的逃逸距离随着人为干扰强度的增加而降低,随着群体大小增加而增加。本研究结果符合理论预期：存活率高的类群（成鸟）有着更长的逃逸距离。     

树鼩原代皮肤成纤维细胞的分离培养技术

建立稳定的树鼩(Tupaiabelangeri)皮肤成纤维细胞的体外培养体系,可为有关此类细胞的实验和疾病树鼩细胞模型提供技术支持。取树鼩大腿内侧皮肤用组织块贴壁法和胶原酶Ⅰ消化法分离皮肤细胞,胰蛋白酶差别消化法纯化细胞;用MEM(10%FBS)完全培养基和含低血清生长添加物(LSGS)的培养基培养细胞;免疫荧光和蛋白印迹法鉴定细胞,并测定细胞的生长、冻存和复苏特性。经树鼩皮肤细胞分离效果比较,胶原酶消化法比组织块贴壁法更适合用于树鼩原代皮肤细胞分离;对分离及冻存复苏后细胞生长状况观察比较发现,添加了LSGS的MEM培养基更利于细胞存活、生长;细胞形态观察、免疫荧光和蛋白印迹检测鉴定所分离的细胞为树鼩皮肤成纤维细胞。成功建立了树鼩原代皮肤细胞的分离、纯化方法,并优化了该细胞的培养条件。     

树鼩原代小胶质细胞的分离培养、纯化与鉴定

本文旨在建立树鼩(Tupaia belangeri)小胶质细胞原代培养及纯化的方法,为利用新型实验动物树鼩进行相关研究工作提供实验材料。将新生树鼩大脑皮质机械分离,皮质组织块用胰蛋白酶消化后制成细胞悬液;培养9～10 d后,分别采用直立手拍法、温和胰酶消化法以及恒温振荡法分离纯化树鼩小胶质细胞,通过差速贴壁进一步纯化。荧光显微镜下,利用小胶质细胞的特异性标记物CD11b抗体进行鉴定。结果显示,小胶质细胞分离培养第3天时呈静息状态,表现为梭形、杆状、分支状等不规则形态。细胞免疫荧光CD11b呈阳性。不同纯化方法细胞免疫荧光并计数显示,直立手拍法所获得的细胞产量明显高于恒温振荡法(P 0.05),细胞阳性率( 96%)明显高于温和胰酶消化法( 90%,P 0.05)。直立手拍法可获得产量及纯度高的树鼩原代小胶质细胞。     

拽线法:一个构建系统发育树的新算法

这篇文章要讨论的拽线法（DL）是贪婪算法的一种。和Fitch—Margoliash（FM）一样,DL也是基于距离矩阵构建系统发育树,但是和FM算法相比,DL具有低复杂度、较高的容错性和准确度高的优点。当存在误差时,DL算法只是加大了不在同一个父节点下的基因序列的距离,但能够准确的判断序列的亲缘关系,进而得到完美的进化树拓扑结构;相比之下,FM算法让各个基因序列间的距离均摊了这种误差,从而有可能将本应该具有相同父节点的基因序列分到不同的分支。     

Predicting the subcellular localization of human proteins using machine learning and exploratory data analysis

Identifying the subcellular localization of proteins is particularly helpful in the functional annotation of gene products. In this study, we use Machine Learning and Exploratory Data Analysis （EDA） techniques to examine and characterize amino acid sequences of human proteins localized in nine cellular compartments. A dataset of 3,749 protein sequences representing human proteins was extracted from the SWISS-PROT database. Feature vectors were created to capture specific amino acid sequence characteristics. Relative to a Support Vector Machine, a Multi-layer Perceptron, and a Naive Bayes classifier, the C4.5 Decision Tree algorithm was the most consistent performer across all nine compartments in reliably predicting the subcellular localization of proteins based on their amino acid sequences （average Precision=0.88; average Sensitivity=0.86）. Furthermore, EDA graphics characterized essential features of proteins in each compartment. As examples, proteins localized to the plasma membrane had higher proportions of hydrophobic amino acids; cytoplasmic proteins had higher proportions of neutral amino acids; and mitochondrial proteins had higher proportions of neutral amino acids and lower proportions of polar amino acids. These data showed that the C4.5 classifier and EDA tools can be effective for characterizing and predicting the subcellular localization of human proteins based on their amino acid sequences.     

云南树鼩肝脏结构的光,电镜观察

本文报告了树肺脏的一般结构和超微结构。与人和灵长目相似，其肺实质也是由导气部和呼吸部构成。但不同的是其细支气管粘膜形成很高的皱襞。在电镜下Ｃｌａｒａ细胞电子密度高，顶部胞质中含有大量膜包颗粒，这些结构与大白鼠和家兔的结构相似。许多毛细血管外方都包绕着基膜和肺泡Ⅰ型上皮细胞的胞质。气血屏障由肺泡上皮细胞、融合的基膜和内皮细胞胞质构成。说明树肺脏不但是呼吸器官，也是一些激素和介质产生及代谢的重要器官。本文为研究树的正常生理功能及分类提供形态学资料。     

Structure,composition and species diversity in an altitude-substrate matrix of rain forest tree communities on Mount Kinabalu,Borneo

We studied forest structure, composition and tree species diversity of eight plots in an environmental matrix of four altitudes (700, 1700, 2700 and 3100 m) and two types of geological substrates (ultrabasic and non-ultrabasic rocks) on Mount Kinabalu, Borneo. On both substrate series, forest stature, mean leaf area and tree species diversity (both 4.8 cm and 10 cm diameter at breast height [dbh]) decreased with altitude. The two forests on the different substrate series were similar at 700 m in structure, generic and familial composition and tree species diversity, but became dissimilar with increasing altitude. The decline in stature with altitude was steeper on the ultrabasic substrates than on the non-ultrabasic substrates, and tree species diversity was generally lower on ultrabasic substrates than on non-ultrabasic substrates at 1700 m. The forests on non-ultrabasic substrates at higher altitudes and those on ultrabasic substrates at the lower altitudes were similar in dbh versus tree height allometry, mean leaf area, and generic and familial composition at 1700 m. These contrasting patterns in forest structure and composition between the two substrate series suggested that altitudinal change was compressed on the ultrabasic substrates compared to the non-ultrabasic substrates. Tree species diversity was correlated with maximum tree height and estimated aboveground biomass, but was not with basal area, among the eight study sites. We suggest that forests with higher tree species diversity are characterized by greater biomass allocation to height growth relative to trunk diameter growth under more productive environment than forests with lower tree species diversity.