Variability of the 16S-23S rRNA gene internal transcribed spacer in Pseudomonas avellanae strains

The 16S-23S rRNA gene internal transcribed spacer region (ITS1) from 34 strains of Pseudomonas avellanae and some strains of Pseudomonas syringae pathovars was amplified and assessed by restriction fragment length polymorphism (RFLP) using 10 restriction enzymes. In addition, the ITS1 region of four representative P. avellanae strains was sequenced and compared by the neighbour-joining algorithm with that of P. syringae pathovars. Two main groups of P. avellanae strains were observed that did not correlate with their origin. The ITS1 region sequencing revealed a high similarity with the P. syringae complex. One group of P. avellanae strains showed high similarity to P. s. pv. actinidiae and P. s. pv. tomato; another group showed similarity with P. s. pv. tabaci and P. s. pv. glycinea. Two strains clustered with P. s. pv. pisi. The difficulties to unambiguously classify the strains associated with hazelnut decline in Greece and Italy are discussed.     

A power-driven increment borer for sampling high-density tropical wood

High-density hardwood trees with large diameters have been found to damage manually operated increment borers, thus limiting their use in the tropics. Therefore, we herein report a new, low-cost gasoline-powered sampling system for high-density tropical hardwood trees with large diameters. This system provides increment cores 15 mm in diameter and up to 1.35 m in length, allowing minimally invasive sampling of tropical hardwood tree species, which, up to the present, could not be collected by conventional 5 or 10 mm increment borers. This system provides a single core sample with ample amount of wood for multidisciplinary analyses, including ring width, stable isotope and wood anatomical measurements. The borer never gets stuck inside stems, even in hollowed trees, cores will never twist during coring, and the gasoline drill gives ample flexibility in the field. It is anticipated that the dendrochronological community will find our technique very useful in the pursuit of tropical tree ring research.     

Tree dieback and regeneration in secondary Acacia zanzibarica woodlands on an abandoned cattle ranch in coastal Tanzania

Questions: Bush encroachment is a major problem when African savanna ecosystems are used for cattle ranching. How do secondary woodlands develop after ranching is abandoned? What are the patterns and rates of tree mortality and regeneration? Location: Mkwaja Ranch (now part of Saadani National Park) in coastal Tanzania. Methods: Ninety‐seven circular plots (4‐m radius) were set in secondary Acacia zanzibarica woodland along a gradient of tree density. Variables relating to tree and grass layers and soil characteristics of plots were recorded. Seedlings were counted twice in the wet seasons, and resprouts once. Tree flowering and pod production were assessed during the fruiting season, while survival of trees initially present was recorded after 12 and 32 months. Interrelationships among variables were investigated using multiple linear regression, binary logistic regression and mixed effects models. Results: After 32 months, over one‐third of trees in plots had died. Most died after fire, especially on heavy soils, and mortality was significantly related to the tree live biomass ratio and soil conditions. Seed production was very low, especially in denser stands. Numbers of seedlings correlated with soil and grass variables but not with seed rain. Half of trees killed above‐ground produced coppice shoots from the base; in contrast, root suckering was independent of topkill. By the end of the study, no seedlings survived and no resprouts emerged above the grass layer. Conclusions: A. zanzibarica woodlands at Mkwaja Ranch were able to develop because of ranching, and can only persist under intensive grazing. The woodlands do not represent a successional stage towards forest and will probably revert to predominantly grassland vegetation within 10–20 years unless grazing pressure from wild ungulates increases considerably and/or fire regimes change.     

Fire history of a prairie/forest boundary: more than 250 years of frequent fire in a North American tallgrass prairie

Questions: Most modern fire‐prone landscapes have experienced disruptions of their historic fire regimes. Are the primary tallgrass prairies of the Flint Hills reflective of a history of continuous fire occurrence? Did fire frequency, severity, size and seasonality change in connection with changes in land use? Has fire occurrence been related to drought conditions? Location: Edges of Cross Timbers forest stands at the Tallgrass Prairie Preserve (TGPP) in the Flint Hills of Osage County, Oklahoma, USA. Methods: Cross‐sections of 76 Quercus stellata were collected from Cross Timbers stands at or near the grassland edge in the TGPP. Dendrochronological methods were used to identify years of formation for tree rings and fire scars. Superposed epoch analysis was used to evaluate the effect of drought conditions on fire occurrence. Results: Fires were recorded in 46.6% of the years between 1729 and 2005. In 41 cross‐sections at one site, the mean fire interval between 1759 and 2003 was 2.59 years, with fire interval decreasing from a mean fire interval of 3.76 years in the early part of the record to 2.13 years in modern times. No extended periods without fire were recorded in the study area. Drought conditions had no significant effect on fire occurrence. Conclusions: In contrast with many fire‐prone landscapes worldwide, the prairies of the Flint Hills have experienced no recent fire suppression or exclusion. Changes in fire frequency mark transitions in land use, primarily from being traditionally used by Native Americans to being managed for cattle production.     

Rapid recovery of mammal fauna in the central Kimberley,northern Australia,following the removal of introduced herbivores

Australia has lost more native mammal species than any other country in the past two centuries, and this record of loss looks likely to worsen over the next few decades. Small‐ to medium‐sized mammals are declining in both distribution and density across large tracts of northern Australia's tropical savannas, including within protected areas. The most likely causes are a combination of changed fire patterns, the impacts of introduced herbivores and predation by feral cats. Here, in contrast to the prevailing trend across northern Australia, we report the recovery of native mammals in response to a large‐scale (>40 000 ha) destocking experiment carried out at Mornington Wildlife Sanctuary in the central Kimberley, north‐west Australia. Following the removal of introduced herbivores from 2004, the species richness and abundance of small native rodents and dasyurids increased significantly across all sampled habitats over the next 3 years. We discuss the implications of these results for guiding land management and applied research to help to reduce the impending risk of mammalian extinctions in northern Australia.     

Two dominant forms of multisite similarity decline – Their origins and interpretation

The number of species shared by two or more sites is a fundamental measure of spatial variation in species composition. As more sites are included in the comparison of species composition, the average number of species shared across them declines, with a rate increasingly dependent on only the most widespread species. In over 80% of empirical communities, models of decline in shared species across multiple sites (multisite similarity decline) follow one of two distinct forms. An exponential form is assumed to reflect stochastic assembly and a power law form niche‐based sorting, yet these explanations are largely untested, and little is known of how the two forms arise in nature. Using simulations, we first show that the distribution of the most widespread species largely differentiates the two forms, with the power law increasingly favored where such species occupy more than ~75% of sites. We reasoned the less cosmopolitan distribution of widespread species within exponential communities would manifest as differences in community biodiversity properties, specifically more aggregated within‐species distributions, less even relative abundance distributions, and weaker between‐species spatial associations. We tested and largely confirmed these relationships using 80 empirical datasets, suggesting that the form of multisite similarity decline offers a basis to predict how landscape‐scale loss or gain of widespread species is reflected in different local‐scale community structures. Such understanding could, for example, be used to predict changes in local‐scale competitive interactions following shifts in widespread species'' distributions. We propose multiple explanations for the origin of exponential decline, including high among‐site abiotic variation, sampling of highly specialized (narrow niche width) taxa, and strong dispersal limitation. We recommend these are evaluated as alternative hypotheses to stochastic assembly.     

7年穿透雨减少对锐齿槲栎光合固碳及生物量碳储量的影响

气候变化背景下不断加剧的干旱事件对树木的生长及碳积累产生显著影响。然而,树木光合固碳能力及生物量碳储量对相对长期干旱的连续响应机制的研究仍然有限。选择70年生的天然锐齿槲栎(Quercus aliena var.acuteserrata)林,探究长期模拟穿透雨减少对锐齿槲栎光合固碳潜力和生物量碳储量的影响。研究结果表明,连续7年的穿透雨减少处理显著降低了锐齿槲栎的光合固碳能力,其叶片净光合速率(A)、最大羧化速率(V_cmax)、最大电子传递速率(J_max)、最大光化学效率(F_v/F_m)均明显降低,且穿透雨减少处理增强了A与气孔导度(g_s)、J_max、F_v/F_m之间的相关性。在适应长期干旱过程中,锐齿槲栎通过增加比叶面积(SLA)、叶片栅栏组织与海绵组织的比值、气孔密度等叶片形态及结构特性变化,降低冠层叶面积(LAI)指数和蒸腾水分散失及提高水分利用效率(WUE)缓解和适应干旱胁迫的不利影响。但是,长期穿透雨减少仍...     

Establishment of a 4650-year-long eigenvalue chronology based on tree-ring cores from Qilian junipers (Juniperus przewalskii Kom.) in Western China

This paper describes a tree-ring width chronology that spans the past 4650 years, established using the recently developed eigenanalysis technique. The aim is to show whether this eigenanalysis method enables the extraction of long-term tree-growth variations that are due to climatic changes, from a large dataset comprising 1263 tree-ring width records sampled from the highlands of Western China. In order to exclude the so-called growth rate/life span association effect, tree-ring width records were sorted into six subsets, based on the life spans of the trees sampled: 200–400, 400–600, 600–800, 800–1000, 1000–1500 years old, and trees older than 1500 years. Some partial chronologies were created, by pairing the set of all tree samples (living, dead, archaeological remains) with the living trees belonging to each subset. We computed the contours of tree-growth variations (on both 100-year and longer time scales) for each subset, ending with six pairs of these partial subset chronologies. Two sums of all these partial chronologies thus yielded a record of precipitation variations over a period ranging from 2627 BCE up to 2012 CE. It was found that this record shows a high degree of similarity to the existing chronology produced using the regional curve standardization (RCS) method applied to the same dataset, indicating that the eigenvalue chronology is capable of faithfully extracting long-term climatic variations. This also confirms that the first eigenvector represents the growth pattern that is characteristic of each biologically unique tree as well as the micro-environment of each tree stand. The variations observed over the last millennium seem to be connected to a cycle of solar activity with a period of ∼200 years. However, a clear lack of correspondence between solar activity and tree growth prior to 1000 CE indicates that the recent consistency may be coincidental. We believe that the eigenanalysis technique is readily applicable to other kinds of tree-ring datasets from different parts of the world.