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891.
François-Yves Dupradeau Guillaume Le Flem Jean-Michel Wieruszeski Manuel Dauchez Alain Alix Véronique Larreta-Garde Jean-Pierre Monti 《Letters in Peptide Science》1997,4(4-6):489-495
H-NMR studies of the bovine insulin S-sulfonatedB-chain are reported in H2O/D2O (9/1) and inglycerol-d5 (5 M) using two-dimensional NMRspectroscopy. The first results show that the oxidizedinsulin B-chain secondary structure differs from thatof native insulin by a loss of the -helixbetween the two disulfide bridges and that theglycerol favours the structuring of the peptide. 相似文献
892.
Christelle David Laurent Bischoff Hervé Meudal Catherine Llorens-Cortes Bernard Pierre Roques Marie-Claude Fournié-Zaluski 《Letters in Peptide Science》1997,4(4-6):411-414
In order to study the physiological role of aminopeptidase A (APA),several -mercapto--amino acyl dipeptides were synthesized toobtain compounds having a high affinity for APA and a high selectivityversus aminopeptidase N (APN). Sulfonamide and carboxylate moieties whichhave been shown to be recognized by the S1 subsite of theenzyme were introduced on the side chain of the -mercapto--aminoacyl sub-unit, the latter being coupled to dipeptides optimized to interactwith the S1 andS2 subsites by means of combinatorialchemistry. Good affinities (16 nM) were obtained, the selectivity factorsbeing up to 160-fold versus APN. 相似文献
893.
Petra Düx Brian Whitehead Rolf Boelens Robert Kaptein Geerten W. Vuister 《Journal of biomolecular NMR》1997,10(3):301-306
A modified HNHB experiment is presented that allows thedetermination of J(NH) coupling constants directly from the ratio ofcross-peak to diagonal-peak intensities. The experiment was applied to thephotoactive yellow protein (PYP) and yielded the magnitude of 1173J(NH) coupling constants. In addition, 293J(NH(i–1)) coupling constantscould be measured, providing information about the backbone angle .These data, in conjunction with the magnitudes of the3J(HNH) coupling constantsobtained from the HNHA spectrum, effectively discriminate the twopossibilities for the stereospecific assignment of theH resonances in glycine residues. For all eight glycineresidues in PYP that were not subject to conformational averaging and hadnon-degenerate H resonance frequencies, the J-couplingdata, together with limited NOE data, yielded the stereospecific assignmentof the H resonances for these residues. In addition,reliable and precise , dihedral constraints were also derived forthese residues from the J-coupling data. 相似文献
894.
895.
Frank Löhr Markus Blümel Jürgen M. Schmidt Heinz Rüterjans 《Journal of biomolecular NMR》1997,10(2):107-118
A triple-resonance NMR technique suitable for the determination ofcarbonyl-related couplings in polypeptide systems is introduced. Theapplication of three novel pulse sequences to uniformly13C/15N-enriched proteins yields E.COSY-likemultiplet patterns exhibiting either one of the3J(Ci–1,Hi
), 3J(Ci–1,Ci
) and3J(Ci–1,Ci)coupling constants in the indirectly detected 13Cdimension, depending on the passive spin selected. The experiments aredemonstrated with oxidized flavodoxin from Desulfovibrio vulgaris. On thebasis of the J-values measured and the backbone -angles derived from ahigh-resolution X-ray structure of the protein, the three associated Karplusequations were reparametrized. The root-mean-square differences between theexperimental coupling constants and those predicted by the optimized Karpluscurves are 0.41, 0.33 and 0.32 Hz for3J(Ci–1,Hi
),3J(Ci–1,Ci
) and3J(Ci–1,Ci),respectively. The results are compared with the Karplus parameters previouslypublished for the same couplings. 相似文献
896.
De Andrade Antônio V. M. Da Costa Nivan B. Longo Ricardo L. Malta Oscar L. Simas Alfredo M. De Sá Gilberto F. 《Molecular Engineering》1997,7(3-4):293-308
Theoretical techniques have been developed and/or improved to predict the molecular structure of lanthanide complexes which
were used to calculate their electronic properties, in particular, their electronic spectra and energy levels necessary to
calculate the rates of energy transfer from the ligands to the metal ion. The molecular structure has been obtained by the
SMLC/AM1 (Sparkle Model for the Calculation of Lanthanide Complexes – Austin Model 1) model where the lanthanide ion is simulated
by a sparkle implemented into the AM1 Hamiltonian used to perform a HF-SCF (Hartree-Fock Self-Consistent Field) calculation.
The previous implementation of the SMLC/AM1 model (sparkle/1) involving only two parameters has been generalized to be consistent
with the AM1 Hamiltonian and the new model (sparkle/2) significantly improved the prediction of molecular structures of Eu(III)
complexes. For the electronic spectra and energy level calculations of the lanthanide complexes the model replaces the metal
ion by a point charge with the ligands held in their positions as determined by the SMLC/AM1 model, and uses a INDO/S-CI (intermediate
neglect of differential overlap/spectroscopic-configuration interaction) model. A preliminary study of the solvent effects
on the absorption spectra of the free ligand is also presented. For the ligand-lanthanide ion energy transfer Fermi's golden
rule is used with the multipolar and exchange mechanisms being implemented and tested for several complexes. These theoretical
techniques have been applied to several complexes yielding very good results when compared to experimental data as well as
predictions for the molecular and electronic structures and the relative contributions of the mechanisms for the energy transfer
rates.
This revised version was published online in June 2006 with corrections to the Cover Date. 相似文献
897.
Summary In this article we review recent work on the physiology of proline and 1-pyrroline-5-carboxylate (P5C) in living organisms and consider recent progress in our understanding of the role of P5C synthetase in collagen metabolism and the regulation of urea cycle in vertebrates. Much of this recent progress has been made possible by advances in our knowledge of the enzymes and genes involved in proline biosynthesis in man. The availability of well characterized P5C synthetase deficiency in man has been an impetus for the cloning of the cDNA encoding for this enzyme from man and facilitated the establishment of the phenotype-genotype relationships in P5C synthetase deficiency in higher vertebrates.Abbreviations GK
-glutamyl kinase
- GPR
-glutamyl phosphate reductase
- P5CR
1-pyrroline-5-carboxylate reductase
- GSA
glutamic--semialdehyde
- P5C
1-pyrroline-5-carboxylate
- P1
Inorganic phosphate
- AMP, ADP, ATP
Adenosine 5-mono-, di-, triphosphate
- NAD+, NADH
nicotinamide adenine dinucleotide, and its reduced form
- NADP+, NADPH
nicotinamide adenine dinucleotide phosphate, and its reduced form; DEAF: diethylaminoethyle
- OAT
ornithine amino transferase; CHO: Chinese hamster ovary
- IGF-1
insulin-like growth factor-1
- P5CDH
pyrroline 5carboxylate dehydrogenase
- IMP
inosine 5-monophosphate 相似文献
898.
Most biological substrates have distinctive sizes, shapes, and charge distributions which can be recognized specifically
by proteins. In contrast, myoglobin must discriminate between the diatomic gases O2, CO, and NO which are apolar and virtually the same size. Selectivity occurs at the level of the covalent Fe-ligand complexes,
which exhibit markedly different bond strengths and electrostatic properties. By pulling a water molecule into the distal
pocket, His64(E7)1 inhibits the binding of all three ligands by a factor of ∼10 compared to that observed for protoheme-imidazole complexes
in organic solvents. In the case of O2 binding, this unfavorable effect is overcome by the formation of a strong hydrogen bond between His64(E7) and the highly
polar FeO2 complex. This favorable electrostatic interaction stabilizes the bound O2 by a factor of ∼1000, and the net result is a 100-fold increase in overall affinity compared to model hemes or mutants with
an apolar residue at position 64. Electrostatic interaction between FeCO and His64 is very weak, resulting in only a two-
to three-fold stabilization of the bound state. In this case, the inhibitory effect of distal pocket water dominates, and
a net fivefold reduction in K
CO is observed for the wild-type protein compared to mutants with an apolar residue at position 64. Bound NO is stabilized ∼tenfold
by hydrogen bonding to His64. This favorable interaction with FeNO exactly compensates for the tenfold inhibition due to the
presence of distal pocket water, and the net result is little change in K
NO when the distal histidine is replaced with apolar residues. Thus, it is the polarity of His64 which allows discrimination
between the diatomic gases. Direct steric hindrance by this residue plays a minor role as judged by: (1) the independence
of K
O2, K
CO, and K
NO on the size of apolar residues inserted at position 64, and (2) the observation of small decreases, not increases, in CO
affinity when the mobility of the His64 side chain is increased. Val68(E11) does appear to hinder selectively the binding
of CO. However, the extent is no more than a factor of 2–5, and much smaller than electrostatic stabilization of bound O2 by the distal histidine.
Received, accepted: 23 May 1997 相似文献
899.
900.
Chalcone synthase (CHS) is a small multigene family with at least four members (CHS-A, B, C and PS) in common morning glory Ipomoea purpurea ROTH. The chalcone synthase enzyme performs the initial condensation reaction that results in the 15-carbon three-ring structure that is the backbone of flavonoid biosynthesis. The biochemical pathway that commences with CHS is important in plant disease defence, pigment biosynthesis and UV protection. Accordingly, it is of substantial interest to characterize levels and patterns of molecular diversity for genes that encode this important enzyme. We report the sequence of 19 CHS-A alleles from Mexican and American populations of common morning glory. American populations of this annual self-compatible vine are believed to have been introduced from Mexico, where the species is native. Individual plants were sampled from populations of common morning glory throughout Mexico and the south-eastern USA. Four American alleles were sequenced and these, together with one allele from Mexico City, were identical in primary nucleotide sequence. These data suggest a restricted origin for the American population, probably as a consequence of selection for domestication by pre-Columbian peoples. Additionally the Mitontic (Chiapas, Mexico) population is significantly more homogeneous than expected by chance indicating that this population may also have experienced a recent population bottleneck. Estimates of nucleotide diversity from the Mexican CHS-A alleles were high. We present evidence that these estimates may, in part, result from low to moderate levels of interlocus recombination/gene conversion. We also present evidence that the ancient duplication of the CHS gene family, preceding the origin of the genus Ipomoea, was associated with heterogeneity in the rate of substitution between the resulting gene family members. The group of gene family members whose sequences possess a signature amino acid of the closely related Stilbene synthase exhibit a significantly faster proportional rate of nonsynonymous substitution. 相似文献