Expression of an engineered cysteine proteinase inhibitor (Oryzacystatin-IΔD86) for nematode resistance in transgenic rice plants

 We have used a genotype-independent transformation system involving particle gun bombardment of immature embryos to genetically engineer rice as part of a programme to develop resistance to nematodes. Efficient tissue culture, regeneration, DNA delivery and selection methodologies have been established for elite African varieties (‘ITA212’, ‘IDSA6’, ‘LAC23’, ‘WAB56-104’). Twenty-five transformed clones containing genes coding for an engineered cysteine proteinase inhibitor (oryzacystatin-IΔD86, OC-IΔD86), hygromycin resistance (aphIV) and β-glucuronidase (gusA) were recovered from the four varieties. Transformed plants were regenerated from all clones and analysed by PCR, Southern and western blot. Detectable levels of OC-IΔD86 (up to 0.2% total soluble protein) in plant roots were measured in 12 out of 25 transformed rice lines. This level of expression resulted in a significant 55% reduction in egg production by Meloidogyne incognita. Received: 4 August 1997 / Accepted: 22 August 1997     

Prevalence of nptII and Tn5 in kanamycin-resistant bacteria from different environments

Abstract Kanamycin (Km)-resistant bacterial populations in different soil, river water, sewage and pig manure slurry samples were enumerated and their prevalence in the total populations determined. About 350 Km-resistant Gram-negative colonies grown in the presence of kanamycin were identified using a rapid presumptive identification scheme. They were then screened for the presence of Tn5 and npt II sequences using hybridization of cells in dot blots, of Southern-blotted genomic DNA extracts and of PCR amplification products. Colonies reacting positively with a 2.7 kb probe of the central region of Tn5, or with a 925 bp npt II specific probe were primarily obtained from sewage samples, whereas fewer were obtained from pig manure slurry, river water and soil. However, in soil samples bacteria containing Tn5 or npt II were not found. Transposon Tn5 carrying the npt II gene could be unequivocally demonstrated in 3 isolates from sewage, identified as Aeromonas spp. (2x) and Escherichia coli . Hin dIII digests of chromosomal DNA obtained from these strains were cloned and shown to confer Km resistance to a sensitive E. coli strain. Further, various strains revealed the presence of npt II homologous sequences in a non-Tn5 background. The occurence of Tn5 and npt II in the samples was also assessed via PCR analysis of total community DNA extracts obtained from the aforementioned environmental samples. Evidence for the occurence of npt II was obtained for sewage, pig manure slurry, for 2 (out of 3) river water (Avon, Rhine) and 3 (out of 6) soil (Flevo silt loam, Westmaas silt loam, Ahlum rhizosphere) samples. Tn5 was not detectable via PCR in any of these environmental DNA extracts but it was found in Ede loamy sand and Flevo silt loam samples taken from a field microplot 2 and 4 weeks after release of a Tn5-containing genetically modified organism.     

Direct detection of rhizosphere-colonizing Pseudomonas sp. using an Escherichia coli rRNA promoter in a Tn7-lux system

Abstract A promoterless Tn7- lux system conferring bioluminescence was fused with an Escherichia coli rRNA gene promoter and compared with neo - or lac-luxCDABE analogs after introduction in Pseudomonas cells. Fusion of the ribosomal promoter with luxCDABE genes increased the bioluminescence of cells by approx. 100- to 1500-fold over the neo-lux system depending on the growth conditions and bacterial strain. When the cells were grown in suspension culture, light production and growth were strongly dependent on the nutrient composition of the medium. Root-colonizing competence was tested in nonsterile soil by autophotographic detection of bacterial bioluminescence on plant roots. The lower detection limit of the autophotographic method for roots inoculated with Pseudomonas fluorescens 2–79 was 10⁵ cfu g⁻¹ fresh root weight. The new bioluminescence marker did not require addition of supplemental nutrients or the aldehyde substrate for the luciferase enzyme and provides a simple and highly sensitive detection method for long term in situ studies on the microbial ecology of specific bacterial strains.     

The human repertoire of antibody specificities against Thomsen-Friedenreich and Tn-carcinoma-associated antigens as defined by human monoclonal antibodies

Summary Human monoclonal antibodies specific for tumour-associated Thomsen-Friedenreich (TF) [Gal(1–3)GalNAc()-O-] and Tn [GalNAc()-O-] glycoproteins were prepared using peripheral blood lymphocytes from healthy blood donors. The B lymphocytes were either directly transformed with Epstein-Barr virus (EBV) or transformed after an in vitro stimulation period with synthetic glycoproteins. The EBV-transformed lymphocytes were subsequently fused with a mouse-human heteromyeloma to secure antibody production and stability. IgM antibodies exhibiting different patterns of specificity for synthetic TF and Tn antigens were obtained, including antibodies specific for the and forms of different Gal(1–3)GalNAc-O- and GalNAc-O- conjugates and antibodies agglutinating neuraminidase-treated erythrocytes. Several of the human monoclonal antibodies showed an increased binding to cultured carcinoma cells as compared to melanoma cells. This straightforward approach for the production of human monoclonal antibodies demonstrates the possibility of investigating the reactivity pattern of tumour-binding antibodies from peripheral blood lymphocytes. The binding patterns of these monoclonal antibodies show that healthy donors carry different fine specificities against synthetic TF/Tn antigens and that these antibodies react with different tumour cells.     

Calculation of sequence divergence from the thermal stability of DNA heteroduplexes

Summary Measurements are reported of the thermal stability of DNA heteroduplexes between clones of the eta-globin pseudogene from a variety of primates. The known sequences of this 7.1-kb region differ from each over a range from 1.6% for human versus chimp to nearly 12% for human versus spider monkey. Thermal stability was determined by standard hydroxyapatite thermal elution, and the results show a precisely linear decrease in thermal stability with divergence. The slope of the regression line is 1.18% sequence divergence per degree centigrade reduction in thermal stability.     

Rescue of Dysfunctional ΔF508-CFTR Chloride Channel Activity by IBMX

Nucleotide-dependent gating of ΔF508-CFTR was evaluated in membrane patches excised from HEK 293 and mouse L-cells and compared to observations on wt-CFTR channels recorded in the same expression systems. ΔF508-CFTR exhibited PKA activated, ATP-dependent channel gating. When compared to wt-CFTR, the K _m for ATP was increased by ninefold (260 μm vs. 28 μm) and maximal open probability (P _o ) was reduced by 49% (0.21 ± 0.06 vs. 0.41 ± 0.02). Additionally, in the absence of PKA, ΔF508-CFTR inactivated over a 1 to 5 min period whereas wt-CFTR remained active. Time-dependent inactivation could be mimicked in wt-CFTR by the intermittent absence of ATP in the cytosolic solution. The effects of 3-isobutyl-1-methyl xanthine (IBMX), a compound reported to stimulate ΔF508-CFTR, were evaluated on wt- and ΔF508-CFTR channels. At concentrations up to 5 mm, IBMX caused a concentration dependent reduction in the observed single channel amplitude (i) of wt-CFTR (maximal observed reduction 35 ± 3%). However, IBMX failed to significantly alter total patch current because of a concomitant 30% increase in P _o . The effects of IBMX on ΔF508-CFTR were similar to effects on wt-CFTR in that i was reduced and P _o was increased by similar magnitudes. Additionally, ΔF508-CFTR channel inactivation was dramatically slowed by IBMX. These results suggest that IBMX interacts with the ATP-bound open state of CFTR to introduce a short-lived nonconducting state which prolongs burst duration and reduces apparent single channel amplitude. A secondary effect observed in ΔF508-CFTR, which may result from this interaction, is a prolongation of the activated state. In light of previously proposed linear kinetic models of CFTR gating, these results suggest that IBMX traps CFTR in an ATP-bound state which may preclude inactivation of ΔF508-CFTR. Received: 5 February 1999/Revised: 25 March 1999     

Elevated atmospheric CO(2) concentration and diurnal cycle induce changes in lipid composition in Arabidopsis thaliana

Few studies regarding the effects of elevated atmospheric CO(2) concentrations on plant lipid metabolism have been carried out. Here, the effects of elevated CO(2) concentration on lipid composition in mature seeds and in leaves during the diurnal cycle of Arabidopsis thaliana were investigated. Plants were grown in controlled climate chambers at elevated (800 ppm) and ambient CO(2) concentrations. Lipids were extracted and characterized using thin layer chromatography (TLC) and gas liquid chromatography. The fatty acid profile of total leaf lipids showed large diurnal variations. However, the elevated CO(2) concentration did not induce any significant differences in the diurnal pattern compared with the ambient concentration. The major chloroplast lipids monogalactosyldiacylglycerol (MGDG) and phosphatidylglycerol (PG) were decreased at elevated CO(2) in favour of phosphatidylcholine (PC) and phosphatidylethanolamine (PE). Elevated CO(2) produced a 25% lower ratio of 16:1trans to 16:0 in PG compared with the ambient concentration. With good nutrient supply, growth at elevated CO(2) did not significantly affect single seed weight, total seed mass, oil yield per seed, or the fatty acid profile of the seeds. This study has shown that elevated CO(2) induced changes in leaf lipid composition in A. thaliana, whereas seed lipids were unaffected.     

Familial hypertrophic cardiomyopathy related E180G mutation increases flexibility of human cardiac α-tropomyosin

α-Tropomyosin (αTm) is central to Ca²⁺-regulation of cardiac muscle contraction. The familial hypertrophic cardiomyopathy mutation αTm E180G enhances Ca²⁺-sensitivity in functional assays. To investigate the molecular basis, we imaged single molecules of human cardiac αTm E180G by direct probe atomic force microscopy. Analyses of tangent angles along molecular contours yielded persistence length corresponding to ∼35% increase in flexibility compared to wild-type. Increased flexibility of the mutant was confirmed by fitting end-to-end length distributions to the worm-like chain model. This marked increase in flexibility can significantly impact systolic and possibly diastolic phases of cardiac contraction, ultimately leading to hypertrophy.     

Influence of temperature on energetics of hydrogen metabolism in homoacetogenic,methanogenic, and other anaerobic bacteria

Hydrogen consumption by various thermophilic, mesophilic and/or psychrotrophic homoacetogens and methanogens was measured at temperatures between 4 and 80°C. Within the tolerated temperature range H₂ was consumed until a final H₂ threshold partial pressure was reached. H₂ thresholds generally decreased with temperature, parallel to the values calculated from the thermodynamics prevailing under culture conditions, i.e. the Gibbs free energy (G) of H₂ oxidation corrected for temperature by both the free-energy form of the Nernst equation and the Van't Hoff equation. The difference between the observed and the calculated H₂ partial pressures gives the minimum energy required for H₂ utilization being about-5 to-6 kJ/mol H₂ for the homoacetogenes and-9 to-12 kJ/mol H₂ for methanogens. The temperature dependence of the standard Gibbs free energy (G⁰) as described by the Van't Hoff equation apparently became the more important for thermodynamics as well as H₂ thresholds the more the temperature deviated from standard conditions (i.e. 25°C). Correction factors for calculation of temperature-corrected G _infT ^sup0 are presented for various H₂-producing and H₂-consuming reactions.     

Chilling induces a decrease in pyrophosphate-dependent H+-accumulation associated with a DeltapH(vac)-stat in mung bean, a chill-sensitive plant

Chilling leads to cytoplasmic acidification in chill-sensitive plants. A possible explanation for this observation is that a ΔpH-stat between the cytosol and vacuole (ΔpH_vac-stat) is perturbed by chilling. To understand the nature of this ΔpH_vac-stat, the effect of temperature, between 20 and 0 °C, on pyrophosphate (PPi)- or ATP-dependent acidification of vacuolar vesicles, isolated from mung bean hypocotyls, was determined. Over the temperature range investigated, the H⁺-influx mediated by PPase was balanced with the H⁺-efflux, which was PPi-dependently suppressed, and consequently a constant pH in vesicles (pH_in) of ca. 5 was maintained against temperature changes. However, the ΔpH_in driven by ATP decreased as the temperature dropped. Thus, the PPi-dependent H⁺-accumulation may function as an essential factor to form a ΔpH_vac-stat against temperature changes. Next, to study the chilling sensitivity of PPi-dependent H⁺-accumulation, vacuolar vesicles were isolated from control seedlings or from seedlings chilled at 0 °C for 1 d. Chilling treatment resulted in a decrease in the H⁺-accumulation rate and in the steady-state ΔpH_in formed by PPi, the causes of which were enhanced by PPi-dependent H⁺-efflux and reduced by H⁺-influx driven by PPase. Together, the results suggest that the decrease of PPi-dependent H⁺-accumulation associated with the ΔpH_vac-stat could result in cytoplasmic acidification.