Order-preserving dimension reduction procedure for the dominance of two mean curves with application to tidal volume curves

Summary .   The paper here presented was motivated by a case study involving high-dimensional and high-frequency tidal volume traces measured during induced panic attacks. The focus was to develop a procedure to determine the significance of whether a mean curve dominates another one. The key idea of the suggested method relies on preserving the order in mean while reducing the dimension of the data. The observed data matrix is projected onto a set of lower rank matrices with a positive constraint. A multivariate testing procedure is then applied in the lower dimension. We use simulated data to illustrate the statistical properties of the proposed testing procedure. Results on the case study confirm the preliminary hypothesis of the investigators and provide critical support to their overall goal of creating an experimental model of the clinical panic attack in normal subjects.     

Benthic fauna in tropical tidal flats – a comparative perspective

Tidal flats extend seaward from mangrove forests along many tropicalcoastlines. This contribution compiles the current knowledge on tropicaltidal flats with regard to species richness, abundance, spatial distributionpatterns and ecological roles taken by major organisms. Tidal flatsencompass a variety of soft-sediment habitats which are inhabited by aspecies-rich fauna. Species numbers are generally higher than in temperatetidal flats, but vary widely between tropical sites where they have not yetbeen fully assessed due to lack of research and taxonomic problems. Theassessment of biodiversity is further complicated by a low species frequency,the small size of macroinfaunal organisms and variations in the occurrence ofspecies between sites. Mean abundance ranges from 1000–2000individuals m^-2, although figures ten times higher have beenrecorded in a mudflat in Costa Rica, and there are great variations in general.Individual densities of small-sized macrofauna are about ten times higher than for larger macrobenthos. A generalized zonation scheme for intertidaldistribution patterns of tropical tidal flat fauna is presented. The comparisonshows that the occurrence of macrofauna and especially of ecosystemengineers varies between sites, which can in turn explain the great variabilityin species abundance patterns recorded in benthic surveys of tidal flatswithin and between regions. This review revealed similarities as well asdifferences between various tropical tidal flats, which underlines the need for further comparative studies to be done, using the same methodology, before generalizations can be made.     

Tidal Flow in Riverine-Type Mangroves

The behavior of tidal flow in the riverine-forest type is investigated in the Aira-River mangrove area in Iriomote Island, Japan. In the mangrove swamp near the bank of the creek, a velocity component parallel to a tidal creek reduces greatly in the direction perpendicular to the creek. Based on this finding, it is theoretically suggested that the eddy viscosity in the mangrove swamp, which is caused by the interaction between mangrove vegetation and the shear stress resulting from the tidal flow in the creek, plays an important role in the hydrodynamics of the mangrove swamp.     

Fluxes of bacterioplankton between a tidal estuary and the sea: returning to the “Outwelling Hypothesis”

The tidal dynamics of bacterioplankton communities at the outer part ofa shallow estuary (Ria de Aveiro, Portugal) were studied during 6 tidal cyclesat a fixed sampling site. Bacterial numbers (0.2–8.1 ×10⁹ cells l^–1), aminopeptidase activity(189–1662 nmol l^–1 h^–1),-glucosidase activity (1.7–67.0 nmoll^–1 h^–1) and potential glucoseincorporation (0.48–3.99 nmoll^–1 h^–1) followed a consistent patternof increase during ebb and decrease during flood.Fluxes of bacterioplankton populations and associated heterotrophic activitiesbetween the estuary and the coastal area during a tidal cycle were estimatedfrom the water flux as derived from a two-dimensional vertically-integratednumerical model. The net fluxes estimated for a tidal cycle ranged from–26.0 to –2.5 to × 10¹⁶ bacterial cells. The nettidal fluxes of potential heterotrophic activities ranged from –10 to–80 mol h^–1 for aminopeptidase, –0.33to –1.10 mol h^–1 for -glucosidase and–0.18 to +0.03 mol h^–1 for glucoseincorporation. Net fluxes were generally negative in sign indicating thetransfer of phyto- and bacterioplankton, as well as potential capacities for thedegradation and recycling of organic matter, from the outer estuarinecompartment to the sea.     

Distribution of polychlorinated biphenyls (PCBs), lead,and cadmium in Manko Tidal Flat,Okinawa

Concentrations of polychlorinated biphenyls (PCBs), Pb, and Cd in sediment samples from the Manko Tidal Flat, an important area for migratory birds in Okinawa, were analyzed. High concentrations of PCBs were detected in the sediment samples from sites under a bridge at the end of the Manko Flat, whereas Pb and Cd concentrations did not indicate specific pollution. The spatial distribution and homologue proportion of PCBs indicated that these PCBs are probably attributed to the residue of paints used on the bridge in the 1970s. PCBs were detected in tilapias from sites in the Manko Flat and in a river connecting to the flat without head constructions. PCBs were also detected in small invertebrates, tanaids, in the flat. The distribution of PCB concentrations in the fauna was parallel to that in the sediments. The average PCB homologue proportions in tilapias and tanaids were similar to those in sediments.     

Submarine groundwater discharge in Osaka Bay, Japan

Submarine groundwater discharge (SGD) rates in Osaka Bay were continuously measured and analyzed to evaluate seawater–groundwater interactions. Fast Fourier transfer and power spectrum density methods were applied to analyze the dominant periods of the SGD variations. Diurnal and semidiurnal periods of SGD variation were found, and they were caused by tidal effects. According to the separation of SGD into fresh and recirculated water components using automated seepage meter measurements and terrestrial groundwater flow analyses, the fresh groundwater component in SGD was evaluated to be in the range 4%–29% at Tannowa, Osaka. Therefore, SGD rates depend mainly on the volume of recirculated seawater. Correlation analyses between SGD and sea level show that SGD is delayed by 4h after sea level changes.     

Consolidation and volumetric soil-water content of salt marsh soils following habitat modification for mosquito control

The runnelling form of habitat modification for mosquito control in saltmarsh increases tidal frequency, and may affect soil properties such as volumetric soil-water content and consolidation. The effects of habitat modification on soil properties are in turn likely to affect ecological processes. Runnels constructed mechanically to a depth of no more than 0.3 m with smooth, spoon shaped edges linked isolated mosquito-breeding pools in the high marsh to the tidal source at the saltmarsh/mangrove interface. The physical design of runnels may result in a significant increase in the frequency of flooding tidal events that flush isolated mosquito-breeding pools. Impacts of the runnelling technique were determined at three marshes using two sampling protocols: (a) comparisons between modified and unmodified shores and (b) comparisons with lateral distance from a runnel. At one marsh, volumetric water content was significantly higher at runnelled than at unrunnelled sites after tides that only partly inundated the marsh, but this pattern was not found at the other marshes. Soil consolidation was greater further from the shore, but was not different between runnelled and unrunnelled shores. Measurements at different lateral distances from runnels demonstrated higher water content levels and lower consolidation up to 5 m from runnels and no effect further away. The varied responses to runnelling at different marshes may reflect specific site characteristics such as slope and hydraulic tidal forces. Remedial strategies for similar mosquito control techniques, based on habitat modification, should include dynamic classifications of saltmarshes.     

南汇东滩湿地围垦水域内浮游动物群落结构的变化

2010年10月-2011年7月对南汇东滩围垦水域和坝外自然水域的浮游动物进行调查,研究了两水域内浮游动物的种类组成、丰度、生物量、优势种和生物多样性等生态学特征参数的季节变化,并初步探讨了围垦内外水域浮游动物群落的结构差异,及其与盐度、水温和人类活动等环境因子的关系.结果表明:围垦水域和坝外自然水域共检获浮游动物30种,其中围垦水域浮游动物24种,以轮虫的种类数最多;坝外自然水域浮游动物14种,其中桡足类占绝对优势.围垦水域浮游动物的年平均丰度明显高于坝外自然水域,年平均生物量则相反.围垦水域以角突臂尾轮虫、萼花臂尾轮虫和广布中剑水蚤等淡水种为主要优势种,而坝外自然水域则以中华华哲水蚤、火腿许水蚤和虫肢歪水蚤等河口半咸水种为主要优势种,且两水域优势种均存在季节更替.坝外水域浮游动物Shannon多样性指数(H)值和Pielou均匀度指数(J)值均明显高于围垦水域,Margalef丰富度指数(d)值和单纯度指数(C)值低于围垦水域.群落聚类和MDS结果表明,围垦水域浮游动物的群落结构与坝外自然水域存在明显差异.围垦是引起被围水域浮游动物群落结构变化的主要原因,盐度、潮汐动力等是导致动物群落结构改变的主要环境因子.     

A first-generation genetic linkage map of the European flat oyster Ostrea edulis (L.) based on AFLP and microsatellite markers

This study presents the first genetic linkage map for the European flat oyster Ostrea edulis . Two hundred and forty-six AFLP and 20 microsatellite markers were genotyped in a three-generation pedigree comprising two grandparents, two parents and 92 progeny. Chi-square goodness-of-fit tests revealed high segregation distortion, which was significant for 32.8% of markers. Sixteen microsatellites and 235 AFLPs (170 type 1:1 AFLPs and 65 type 3:1 AFLPs) were used to build sex-specific linkage maps using crimap software. The first parental map (P₁) consisted of 104 markers grouped in nine linkage groups, and spanned 471.2 cM with an average spacing of 4.86 cM. The second parental map (P₂) consisted of 117 markers grouped in 10 linkage groups (which equals the haploid chromosome number), and covered 450.0 cM with an average spacing of 4.21 cM. The estimated coverage of the genome was 82.4% for the P₁ map and 84.2% for the P₂ map. Eight linkage groups that were probably homologous between the two parents contained the same microsatellites and 3:1 AFLPs (segregating through both parents). Distorted markers were not randomly distributed across the genome and tended to cluster in a few linkage groups. Sex-specific differences in recombination rates were evident. This first-generation genetic linkage map for O. edulis represents a major step towards the mapping of QTL such as resistance to bonamiasis, a parasitosis that has drastically decreased populations of flat oysters since the 1960s.     

POTOS: a portable topographic system for measuring inaccessible muddy creek areas

Tidal flats and marshes in intertidal environments and estuaries generally cover large areas. The access to these places is usually complicated. The area suffers cycles of flooding and drying under the influence of the tide, which in conjunction with soft and muddy soils makes every movement very difficult. In particular, in tidal channels mud is softer and, many times, it is impossible to move around these areas. Furthermore, muddy tidal flat creeks are often located far away from conventional vehicle access. Then, to perform a topographic study using traditional methodology is not feasible; therefore, an alternative methodology has been developed to deal with these problems. POTOS is a light metallic frame developed to measure creek topography indirectly with good precision. The tensed frame, up to 12 m long, simply supported and weighting only 40 kg allows making relative height measurements of the surface between the supporting posts. The field methodology is described and some results obtained with the instrument developed are presented. Errors were calculated by comparing measurements obtained with the instrument and those gathered by traditional methodologies. Field results are a series of measurements obtained in Bahía Blanca Estuary tidal flats and marshes at different periods of the year.