Search for lunar periodicity in the bannertail kangaroo rat (Dipodomys spectabilis)

Abstract

The endogenous activity cycle of the nocturnal bannertail kangaroo rat was investigated. Although bannertail activity is a function of the lunar day as well as the solar day, all ten subjects exhibited free‐running activity periods of solar‐day length; there was no evidence of an endogenous lunar‐day cycle. Animals were provided with a burrow system and a small pseudo‐desert, a laboratory facility in which animal activity data closely resembled measurements taken in the field. Several analytical techniques for quantifying the data were utilized, and one, the mean interval of activity, is recommended to other investigators.     

Fitness costs of disrupting circadian rhythms in malaria parasites

Circadian biology assumes that biological rhythms maximize fitness by enabling organisms to coordinate with their environment. Despite circadian clocks being such a widespread phenomenon, demonstrating the fitness benefits of temporal coordination is challenging and such studies are rare. Here, we tested the consequences--for parasites--of being temporally mismatched to host circadian rhythms using the rodent malaria parasite, Plasmodium chabaudi. The cyclical nature of malaria infections is well known, as the cell cycles across parasite species last a multiple of approximately 24 h, but the evolutionary explanations for periodicity are poorly understood. We demonstrate that perturbation of parasite rhythms results in a twofold cost to the production of replicating and transmission stages. Thus, synchronization with host rhythms influences in-host survival and between-host transmission potential, revealing a role for circadian rhythms in the evolution of host-parasite interactions. More generally, our results provide a demonstration of the adaptive value of circadian rhythms and the utility of using an evolutionary framework to understand parasite traits.     

Endogenous and exogenous factors affecting periodicities of female calling and male sex pheromone response in Grapholitha molesta (Busck)

In Grapholitha molesta periodicities of both female calling and male response to sex pheromone by wing fanning while walking were determined in part by circadian rhythms. The lights-on photoperiodic cue was at least partly responsible for setting the phase of the female calling rhythm. Absolute temperature levels and not necessarily a decrease in temperature modified the timing of calling; there were both high and low thresholds of temperature and, at particular photoperiod times, a temperature range optimal for calling. When the previous performance of calling was prevented by subthreshold temperatures, calling during the next period commenced earlier if temperatures were favourable. Thus, the previous performance of calling may establish a refractory period, or temperature decrease may act as a cue resetting the phase of the calling rhythm. The ability to use both an endogenous clock and exogenous temperature cues to synchronize sexual activity appears adaptive for a temperate zone insect whose multiple generations are exposed to both long periods of favourable climatic conditions in summer and harsh, unpredictable conditions in spring or fall.     

Modeling alpha-helical transmembrane domains: the calculation and use of substitution tables for lipid-facing residues.

Amino acid substitution tables are calculated for residues in membrane proteins where the side chain is accessible to the lipid. The analysis is based upon the knowledge of the three-dimensional structures of two homologous bacterial photosynthetic reaction centers and alignments of their sequences with the sequences of related proteins. The patterns of residue substitutions show that the lipid-accessible residues are less conserved and have distinctly different substitution patterns from the inaccessible residues in water-soluble proteins. The observed substitutions obtained from sequence alignments of transmembrane regions (identified from, e.g., hydrophobicity analysis) can be compared with the patterns derived from the substitution tables to predict the accessibility of residues to the lipid. A Fourier transform method, similar to that used for the calculation of a hydrophobic moment, is used to detect periodicity in the predicted accessibility that is compatible with the presence of an alpha-helix. If the putative transmembrane region is identified as helical, then the buried and exposed faces can be discriminated. The presence of charged residues on the lipid-exposed face can help to identify the regions that are in contact with the polar environment on the borders of the bilayer, and the construction of a meaningful three-dimensional model is then possible. This method is tested on an alignment of bacteriorhodopsin and two related sequences for which there are structural data at near atomic resolution.     

Sexual dimorphism and seasonal changes of leaf gas exchange in the dioecious tree Ilex paraguariensis grown in two contrasted cultivation types

Yerba maté (Ilex paraguariensis, Aquifoliaceae) is a subtropical, evergreen, dioecious, South American tree. In one preliminary study, it was observed that the functional strategy of yerba mate females, aiming to finish reproductive process, was increased transpiration relative to photosynthetic rates compared with males, on self‐shaded leaves. We hypothesised that the long‐term gas exchange response of males and females can evolve independently of phenological stage and cultivation type. In this spirit, the primary aim of the study was to analyse the physiological sexual dimorphism of this species, evaluating fluctuations of gas exchanges related to microclimate and phenological stages. A field study was conducted on adult plants of yerba maté cultivated in monoculture (MO) and in forest understorey (FUS), and measurements carried out in situ on microclimate and leaf gas exchange parameters. The photosynthetic photon flux density that was attained at leaf level in FUS was reduced roughly 10‐fold compared with that in MO. Various leaf age populations were observed during a 2‐year period at 2‐month intervals and grouped into four categories: young, young‐fully‐expanded, fully‐expanded and old. Young and young‐fully‐expanded leaves were the most active in photosynthesis. Leaves of female plants showed greater photosynthetic rate than those of male plants, which was expressed on all leaf age categories in MO, but only during vegetative stages previous to flowering and fruit ripening. The photosynthesis of young‐fully‐expanded leaves of females grown in FUS was superior to males but only during winter growth pause. The stomatal conductance differed in relation to cultivation type and leaf age but did not show the sexual differentiation. Physiological sexual dimorphism in yerba mate is shown to be plastic, responding to environmental conditions. The cost associated to the reproduction of yerba maté could be most easily met showing physiological differentiation of both sexes. A higher reproductive investment of females might be compensated for by exhibiting greater leaf photosynthesis than males that occurs in vegetative stages that precede flowering and fruit ripening.     

The collapse of cycles in the dynamics of North American grouse populations

Cyclic dynamics of bird and mammal populations are commonly reported in northern latitudes throughout the world, and recent European observations on rodents and grouse suggest that cycle periods decline towards southern latitudes. To investigate latitudinal patterns of cyclic dynamics in North America, we assembled 27 long‐term data sets collected between 1939 and 2001 for three grouse species. By fitting the data with autoregressive models to measure direct and delayed density dependence, we show that, in contrast to European studies, North American grouse exhibit period increases from north to south, with cycles collapsing via period lengthening. This occurs because delayed density dependence decreases in southern latitudes, whereas direct density dependence increases. These results show that cyclic dynamics can dissipate by period lengthening as well as the period shortening postulated for European grouse and rodents.     

Geographical variation in reproductive biology is obscured by the species problem: a new record of brooding in Porites cylindrica,or misidentification?

Little is known about the reproductive biology of corals from the Philippines, despite this archipelago being at the center of coral reef biodiversity. Here, we report on the reproductive biology of a branching poritid species provisionally identified as Porites cf. cylindrica in the Bolinao‐Anda reef complex (BARC), northwestern Philippines. Histological examination and ex situ planulation observations reveal P.cf. cylindrica colonies to be gonochoric brooders that release actively swimming zooxanthellate larvae. Planulation appeared to occur throughout the year and there was significant lunar periodicity in planular release. The mean peak of release occurred from the 25th to 29th lunar day or just before the new moon, while peak in diel timing in planulation occurred during daytime between 08:00–11:00 h. Elsewhere in the Pacific, Porites cylindrica colonies are reported to broadcast spawn. If our species identification is correct, then this is the first report of brooding in P. cylindrica. Although there are no apparent morphological differences between the coral in this study and P. cylindrica reported from other sites, an alternative explanation for our findings is that our provisionally identified Porites cf. cylindrica is a different species. If so, our findings further highlight how difficulties with species identification in corals can influence our understanding of geographical variation in reproductive biology.     

The structure of selective dinucleotide interactions and periodicities in D melanogaster mtDNA

Background

We found a strong selective 3-sites periodicity of deviations from randomness of the dinucleotide (DN) distribution, where both bases of DN were separated by 1, 2, K sites in prokaryotes and mtDNA. Three main aspects are studied. I) the specific 3 K-sites periodic structure of the 16 DN. II) to discard the possibility that the periodicity was produced by the highly nonrandom interactive association of contiguous bases, by studying the interaction of non-contiguous bases, the first one chosen each I sites and the second chosen J sites downstream. III) the difference between this selective periodicity of association (distance to randomness) of the four bases with the described fixed periodicities of base sequences.

Results

I) The 16 pairs presented a consistent periodicity in the strength of association of both bases of the pairs; the most deviated pairs are those where G and C are involved and the least deviated ones are those where A and T are involved. II) we found significant non-random interactions when the first nucleotide is chosen every I sites and the second J sites downstream until I = J = 76. III) we showed conclusive differences between these internucleotide association periodicities and sequence periodicities.

Conclusions

This relational selective periodicity is different from sequence periodicities and indicates that any base strongly interacts with the bases of the residual genome; this interaction and periodicity is highly structured and systematic for every pair of bases. This interaction should be destroyed in few generations by recurrent mutation; it is only compatible with the Synthetic Theory of Evolution and agrees with the Wright’s adaptive landscape conception and evolution by shifting balanced adaptive peaks.

Electronic supplementary material

The online version of this article (doi:10.1186/0717-6287-47-18) contains supplementary material, which is available to authorized users.     

Movement of adult pecan weevils Curculio caryae within pecan orchards

1 The pecan weevil Curculio caryae (Horn) (Coleoptera: Curculionidae) is an indigenous pest of pecan Carya illinoinensis (Wangenh.) K. Koch, in North America. Understanding the movement of this pest from the orchard floor to host trees could lead to pest management practices that exploit weevil behaviour and thus reduce insecticide application to the entire orchard canopy. Furthermore, no information exists on diel periodicity of pecan weevil movement. 2 Movement of adult pecan weevils crawling and flying to the host trunk, flying to the host canopy, crawling within the host canopy and flying between host trees was studied using four types of passive traps over four seasons. Each type of trap was used to capture weevils at different locations on or near the tree and to discriminate flying versus crawling behaviour. 3 More pecan weevils crawl to the trunk than fly and a proportion of the population flies directly from the orchard floor into the pecan canopy. The majority of this movement occurs at dusk. 4 The vertical distribution of weevils was generally uniform throughout the canopy but more weevils were captured in suspended traps nearest tree tops, rather than traps near the ground, when flying between trees and this was significantly so for two of 4 years. 5 The results of the present study are contrary to previous reports suggesting that most adult pecan weevils fly to the pecan trunk after emergence from the soil; however, our results did indicate that a proportion of the population flies directly from the orchard floor into the pecan canopy and thus would circumvent strategies that attempt to control weevils moving up the trunk.