寒温带针叶林优势树种倒木分解真菌群落多样性及功能差异

为了揭示寒温带针叶林不同树种倒木分解中真菌群落的分布格局,探讨影响倒木真菌群落分布的养分驱动因子。采用Illumina MiSeq高通量测序技术和R语言等分析方法对微生物多样性数据进行信息挖掘,解析白桦(Betula platyphylla Suk.)、兴安落叶松(Larix gmelinii(Rupr.)Kuzen)、樟子松(Pinus sylvestris var. mongolica Litv.)倒木分解初期真菌群落的多样性及功能差异。研究发现,寒温带针叶林中白桦、樟子松倒木优势菌群为Basidiomycota(担子菌门)、Trichaptum(附毛菌属),兴安落叶松倒木优势菌群为Ascomycota(子囊菌门)、Acidea菌属。多样性分析表明,不同树种倒木真菌群落的Alpha多样性由高到低依次为兴安落叶松、白桦、樟子松,树种的差异极显著的改变了操作分类单元(OTU)、属水平上倒木真菌群落的Beta多样性。菌群生态分析表明,腐生型是3种倒木上优势真菌的主要生态类型,木质腐生为白桦、樟子松倒木上真菌的主要生活方式,土壤腐生为兴安落叶松真菌类群的主要生活方式。养分关联分析表明,pH、全碳(TC)、全氮(TN)、碳氮比(C/N)、半纤维素、木质素等养分指标在3种倒木间存在显著性差异,其中含水率(MC)、TC、TN、纤维素、半纤维素是影响倒木优势真菌群落分布的主要养分因素。不同树种对倒木真菌群落的富集具有差异性,这种差异带来的微生物多样性及功能变化对寒温带森林生态系统的物质循环具有重要的科学意义。     

High stabilization of immobilized Rhizomucor miehei lipase by additional coating with hydrophilic crosslinked polymers: Poly-allylamine/Aldehyde–dextran

Immobilized enzymes have a very large surface region which is not in contact with the support surface and, thus, have potential as a target for novel stabilization strategies. In this paper, coating the surfaces of such enzymes with a highly hydrophilic and compact cross-linked poly-aminated polymer as a strategy to increase the thermal stability of the immobilized enzymes is proposed. In particular, Rhizomucor miehei lipase (RML) was immobilized by interfacial adsorption onto octyl-agarose and further coated with poly-allylamine (PAA), a polymer that is very rich in primary amino groups. Cross-linking of the PAA layer to coat the immobilized enzyme was carried out, in situ, by reaction with freshly oxidized dextran (aldehyde–dextran). The PAA layer only exerted moderate stabilizing effects (around 4-fold), but further cross-linking with aldehyde–dextran highly increased the stabilizing effects; the new derivative was 440-fold more stable than uncoated derivative at 55 °C and pH 7 and exhibited 6-fold more catalytic activity compared to the soluble enzyme used for immobilization. We hypothesize that the hydrophilicity of PAA reduces the exposure of internal hydrophobic pockets to the enzyme surface at high temperatures. Besides, the compactness of the polymer may reduce distortion of the enzyme surface during inactivation.     

Thermoregulation in rapid growing broiler chickens is compromised by constraints on radiative and convective cooling performance

Broiler chickens are selected to undergo a rapid six-week hatch-to-slaughter growth phase to attain large body and muscle mass. Broilers have relatively high resting and locomotor metabolic costs suggesting that adaptive thermoregulatory mechanisms are required to dissipate excess heat. Using thermal imaging in the growing broiler we characterised the trajectory of radiative and convective cooling in still air across broiler development. Scaling of head, tarsus and toe surface area did not deviate from body mass^2/3 while torso area increased with positive allometry, body mass^0.82, reflecting increased feather coverage and/or disproportionate abdominal/thoracic growth. Despite relatively increased area, the body became less effective for heat transfer presumably due to increasing feather coverage. Conversely, the magnitude of heat exchange from the distal hindlimbs was improved in larger birds. Overall capacity to transfer heat by convection and radiation in still air was attenuated over development, since the proportion of resting metabolic rate accounted for decreased in standing and sitting postures. This physiological constraint could be ameliorated by increased latent heat transfer or provision of environmental ventilation, which we modelled according to industrial guidelines. Based on models, higher airspeeds coincided with improved convective cooling that assisted in maintaining the proportion of RMR accounted for by convective and radiative heat transfer. These data highlight the potentially adverse thermoregulatory effects of rapid growth rate and body mass increases, which may contribute to the increased sedentary resting and decreased locomotor behaviour observed in large broilers.     

Metagenomic assessment of the Cebus apella gut microbiota

Cebus Apella (C. apella) is a species of Nonhuman Primate (NHP) used for biomedical research because it is phylogenetically similar and shares anatomical commonalities with humans. Here, the gut microbiota of three C. apella were examined in the different regions of the intestinal tract. Using metagenomics, the gut microbiota associated with the luminal content and mucus layer for each intestinal region was identified, and functionality was investigated by quantifying the levels of short chain fatty acids (SCFAs) produced. The results of this study show a high degree of similarity in the intestinal communities among C. apella subjects, with multiple shared characteristics. First, the communities in the lumen were more phylogenetically diverse and rich compared to the mucus layer communities throughout the entire intestinal tract. The small intestine communities in the lumen displayed a higher Shannon diversity index compared to the colon communities. Second, all the communities were dominated by aero‐tolerant taxa such as Streptococcus, Enterococcus, Abiotrophia, and Lactobacillus, although there was preferential colonization of specific taxa observed. Finally, the primary SCFA produced throughout the intestinal tract was acetic acid, with some propionic acid and butyric acid detected in the colon regions. The small intestine microbiota produced significantly less SCFAs compared to the communities in the colon. Collectively, these data provide an in‐depth report on the composition, distribution, and SCFA production of the gut microbiota along the intestinal tract of the C. apella NHP animal model.     

The use of techniques of sensory evaluation as a framework for teaching experimental methods

Several simple techniques of sensory assessment are described and the conditions for their satisfactory performance stated. The manner in which these experiments can be used to provide open-ended practical exercises for classes is discussed and its advantages as a relatively cheap and simple method of teaching experimentation is described. Experiments are described in which the diffusion of salt into potatoes after cooking them in boiling salted water is investigated using several techniques of sensory assessment, and other suitable areas ofinvestigation are suggested     

Large-scale observational studies of hypericum extracts in patients with depressive disorders—a systematic review

We present a systematic review of observational studies of hypericum extracts in the treatment of depressive disorders. We included non-randomized studies with at least 100 patients suffering from depressive disorders treated with hypericum mono-preparations for at least 4 weeks, which reported clinical outcomes. Potentially relevant studies were identified through searches in electronic databases (Medline, PubMed), contacts with manufacturers, and handsearching of proceedings of phytomedicine congresses. Information on patients, interventions, methods an results were extracted by two reviewers. Sixteen studies including a total of 34,804 (range 101-11,296) patients met the inclusion criteria. Most studies investigated short-term effects (4-6 weeks) in patients with mild to moderate depression. Response rates (according to physician assessment) varied between 65% and 100%, the proportion of patients dropping out due to side effects varied between 0.0% and 2.8%. Two studies investigated long-term effects (52 weeks). Reponse rates were 60% and 69%, respectively, and the proportions of patients dropping out due to side effects were 3.4% and 5.7%, respectively. Serious side effects or interactions were not reported in any study. The quality of reporting was insufficient in the majority of publications. The available studies show that hypericum extract are well tolerated and seem to be effective in routine treatment of mild to moderate depressive disorders.     

Comparative studies on thermodynamic characteristics of pea legumin and legumin-T thermal denaturation

Characteristics of thermal denaturation of pea legumin and a product of its limited proteolysis with trypsin – legumin-T, in a wide range of NaCl concentrations have bean measured by means of differential scanning microcalorimetry. By the increase of NaCl concentration, the number of cooperative units (domains) increases from 1 per one polypeptide chain to 2 for legumin and 1.8 for legumin-T. Deconvolution of denaturation peaks have revealed up to three peaks, which were ascribed to the dissociation of protein macromolecules to subunits and the unfolding of - and β-polypeptide chains. The analysis of experimental data based on some assumptions showed that the splitting of C-termini of -chains, which are not constituents of cooperative domains, in the course of limited trypsinolysis results in destabilization of the quaternary structure of legumin and loosening of -chains, as well as decrease of the temperatures of their maximum stability.     

Further comments on analysis of covariance in insect dietary studies

Raubenheimer & Simpson (1992) recently discussed the advantages of using analysis of covariance in insect dietary studies as an alternative to the more conventional ratio-based nutritional indices. We expand on some interpretations of Raubenheimer & Simpson and illustrate our points with examples from published and unpublished data sets. Specifically, we show that an ANCOVA on biomass gain incorporating initial biomass as a covariate provides information not immediately available using the analysis suggested by Raubenheimer & Simpson (ANCOVA on final biomass incorporating initial biomass as a covariate). Second, we show that dietary studies in which the covariate (food consumption) is affected by diet can provide information about the relative importance of preingestive effects (e.g., deterrence) and postingestive effects (e.g., antibiosis) on performance. Cautions about this latter use of ANCOVA are discussed.     

Heat induced liver cell proliferation in the livebearing fish Poeciliopsis

Synopsis Liver regeneration is induced by heat stress in the small viviparous fish, Poeciliopsis. Acute exposure to sublethal temperatures, one to two degrees below their killing temperature, damages tissue and initiates liver cell proliferation in P. lucida, P. monacha, and P. monacha-lucida hybrid clones, SYN-4 and SYN-5. Regeneration of liver cells began within 1–2 days following heat stress and proceeded over 5 days. Peak cell proliferation occurred 2–3 days after treatment in fish of all four genotypes. Cell proliferation was induced in the two all-female clones, SYN-4 and SYN-5, by exposure to 40.5° C for 60 minutes. This treatment imposed mortalities of 17.9% and 16.7%, respectively, whereas reduction of the temperature to 39.5°C and reduction of the time to 30 minutes resulted in no mortalities without significantly lowering the level of cell proliferation (p > 0.05). Liver cell proliferation induced by both heat treatments was significantly higher (p < 0.05) in the SYN-5 hybrids than in SYN-4. The induction of liver cell proliferation with sublethal temperature exposures is discussed as it may relate to chemical carcinogenesis in both feral and laboratory fish. Acute heat exposure may be used experimentally in fish as an independent stimulus for liver cell proliferation in carcinogenesis studies. In poikilothermic animals-heat exposure offers an alternative to surgical removal of approximately two-thirds of the liver, the method most frequently used in rodents to study the process of liver regeneration.     

Progress and promise in understanding the genetic basis of common diseases

Susceptibility to common human diseases is influenced by both genetic and environmental factors. The explosive growth of genetic data, and the knowledge that it is generating, are transforming our biological understanding of these diseases. In this review, we describe the technological and analytical advances that have enabled genome-wide association studies to be successful in identifying a large number of genetic variants robustly associated with common disease. We examine the biological insights that these genetic associations are beginning to produce, from functional mechanisms involving individual genes to biological pathways linking associated genes, and the identification of functional annotations, some of which are cell-type-specific, enriched in disease associations. Although most efforts have focused on identifying and interpreting genetic variants that are irrefutably associated with disease, it is increasingly clear that—even at large sample sizes—these represent only the tip of the iceberg of genetic signal, motivating polygenic analyses that consider the effects of genetic variants throughout the genome, including modest effects that are not individually statistically significant. As data from an increasingly large number of diseases and traits are analysed, pleiotropic effects (defined as genetic loci affecting multiple phenotypes) can help integrate our biological understanding. Looking forward, the next generation of population-scale data resources, linking genomic information with health outcomes, will lead to another step-change in our ability to understand, and treat, common diseases.