Influence of drainage basin topography and elevation on carbon dioxide and methane supersaturation of stream water

The partial pressures of CO₂ (pCO₂) andCH₄ (pCH₄) in streams are not only governed byinstream processes, but also by transformations occurring in soil andgroundwater ecosystems. As such, stream water pCO₂ andpCH₄ can provide a tool to assess ecosystem respiration andanaerobic metabolism throughout drainage basins. We conducted three surveyssampling the gas content of streams in eastern Tennessee and western NorthCarolina to assess factors regulating ecosystem metabolism in catchmentswith contrasting geomorphologies, elevations and soil organic matterstorage. In our first survey, the influence of drainage basin geomorphologyon ecosystem respiration was examined by sampling streams drainingcatchments underlain by either shale or dolomite. Geomorphology isinfluenced by geology with shale catchments having shallower soils, broader,unconstrained valley floors compared with dolomite catchments.pCO₂ varied little between catchment types but increased froman average of 3340 ppmv in spring to 9927 ppmv in summer or 9.3 and 28 timesatmospheric equilibrium (pCO_2(equilib)), respectively. Incontrast, pCH₄ was over twice as high in streams drainingshale catchments (306 ppmv; pCH_4(equilib) = 116) compared withmore steeply incised dolomite basins (130 ppmv; pCH_4(equilib)= 51). Using the ratio of pCH₄:pCO₂ as an indexof anaerobic metabolism, shale catchments had nearly twice as muchanaerobiosis (pCH₄:pCO₂ = 0.046) than dolomitedrainages (pCH₄:pCO₂ = 0.024). In our secondsurvey, streams were sampled along an elevational gradient (525 to 1700 m)in the Great Smoky Mountains National Park, USA where soil organic matterstorage increases with elevation. pCO₂ did not vary betweenstreams but increased from 5340 ppmv (pCO_2(equilib) = 15) to8565 ppmv (pCO_2(equilib) = 24) from spring to summer,respectively. During spring pCH₄ was low and constant acrossstreams, but during summer increased with elevation ranging from 17 to 2068ppmv (pCH_4(equilib) = 10 to 1216). The contribution ofanaerobiosis to total respiration was constant during spring(pCH₄:pCO₂ = 0.017) but during summer increasedwith elevation from 0.002 at 524 m to 0.289 at 1286 m. In our last survey,we examined how pCO₂ and pCH₄ changed withcatchment size along two rivers (ca. 60 km stretches in both riverscorresponding to increases in basin size from 1.7–477km² and 2.5–275 km²). pCO₂and pCH₄ showed opposite trends, with pCO₂decreasing ca. 50% along the rivers, whereas pCH₄roughly doubled in concentration downstream. These opposing shifts resultedin a nearly five-fold increase of pCH₄:pCO₂along the rivers from a low of 0.012 in headwaters to a high of 0.266 65-kmdownstream. pCO₂ likely declines moving downstream asgroundwater influences on stream chemistry decreases, whereaspCH₄ may increase as the prevalence of anoxia in riversexpands due to finer-grained sediments and reduced hydrologic exchange withoxygenated surface water.     

Quantitative determination of secondary amines: measurement of N-methylalanine

A simple, rapid method for the quantitative estimation of secondary amines was developed based upon the reaction of this group of compounds with sodium nitroprusside and acetaldehyde. The conditions for optimal color production are described and the extent of interference by various primary and tertiary amines is evaluated. No appreciable interference from other compounds commonly found in biological tissues was found. This assay permits estimation of 0.05–0.80 μmoles of N-methylalanine. The possible application of this method to the measurement of proline and hydroxyproline is suggested.     

Mitochondrial DNA divergence in the critically imperilled pygmy madtom,Noturus stanauli (Siluriformes: Ictaluridae)

The mitochondrial cytochrome b gene was sequenced for six individuals of the pygmy madtom, Noturus stanauli, a globally imperilled catfish, from both known localities in Tennessee (U.S.A.) separated by over 1055 river km. Phylogenetic and population genetic analyses revealed little divergence between these populations for this locus.     

Oogenesis in Fundulus heteroclitus: I. Preliminary observations on oocyte maturation in vivo and in vitro

During the breeding season, the ovary of Fundulus heteroclitus contains follicles of all sizes up to around 1.8 mm in diameter and continuously ovulates eggs (1.7 mm) into the ovarian lumen. Vitellogenic follicles appear to extend up to 1.3 mm, while those larger than 1.4 mm are undergoing hydration concomitant with maturation. If feeding ceases, vitellogenesis appears to stop and maturational stages flush out of the ovary. Refeeding causes reappearance of maturational stages. A culture procedure was developed for dissected F. heteroclitus follicles and a size range (1.3–1.4 mm) was defined which responded to added hormones by undergoing the same maturational changes (germinal vesicle breakdown, fusion, and peripheral detachment of oil droplets, appearance of activability) as occurs in vivo, although the extent of hydration was not quite as extensive. Ovulation, however, did not consistently occur in vitro. Both 11-deoxycorticosterone and progesterone are potent inducers of maturation in vitro, with median effective doses being 10–20 ng/ml. Hydrocortisone is about one-tenth as active. Human chorionic gonadotropin promotes maturational changes in about 25% of the follicles over a broad concentration range (1–100 IU/ml). The environmental and hormonal mechanisms which influence oocyte maturation in teleosts are discussed in relation to our findings for F. heteroclitus.     

New fossil fruits of Carya (Juglandaceae) from the latest Miocene to earliest Pliocene in Tennessee,eastern United States

Fossil fruits including nuts and associated husk valves of a new species of Carya (Juglandaceae) are described from the latest Miocene to earliest Pliocene in northeastern Tennessee, eastern United States. The husk valves are elliptic, 1.2–4.5 mm thick, with a convex exterior face and a concave interior face; the nuts are globose to ovoid in shape, smooth and longitudinally ribbed on exterior surface, with a short protruding apex and a slightly 4-angled base; inner ribs, lacunae and primary septa are well-developed, while secondary septa are absent or weakly developed. The combination of these carpological characteristics clearly shows a close resemblance to the genus Carya in Juglandaceae. Detailed comparisons of carpological morphology and anatomy indicate that the present fossil taxon is different from both living and most other fossil species of the genus, and therefore warrants the designation of a new fossil species, Carya tennesseensis Huang et al., sp. nov. Carya tennesseensis displays a carpological similarity to C. ventricosa from the late Oligocene to early Pliocene in Europe, suggesting a potential species exchange of the genus between Europe and southeastern North America during the late Neogene. The new fossil species represents one of the few fruit fossil species of Carya from its modern distribution range in southeastern North America. It provides crucial information for better understanding the rapid diversification of the genus from the late Miocene to early Pliocene, and the origin and establishment of today's Carya biodiversity in this region.     

An extended series of fluorescent sulfhydryl reagents useful in energy transfer measurements

Synthesis of four new fluorescent sulfhydryl reagents is described. All are isomers of the previously synthesized N-(iodoacetylaminoethyl)-1-naphthylamine-5-sulfonic acid (1,5-I-AEDANS) and its 1,8-isomer (1,8-I-AEDANS). Three of these new probes (1,4-Br-AEDANS, 2,8-Br-AEDANS, and 2,6-I-AEDANS) carry a single sulfonic acid residue and the fourth (3-(2,7)-Br-AEDANS) carries two sulfonic acid residues. The excitation and emission spectrum of each of these probes is distinct when covalently attached to bovine serum albumin. In addition, they all show a single fluorescent lifetime in the range of 8.0 to 20.8 nsec. This extended range of fluorescent isomers can thus be useful for selecting approprlate energy donors in fluorescence energy transfer experiments.     

Cascade control of E. coli glutamine synthetase. II. Metabolite regulation of the enzymes in the cascade.

Enzymes and regulatory proteins involved in the cascade control of glutamine synthetase activity of Escherichia coli have been separated from one another and the effects of numerous metabolites on each step in the cascade have been determined. The adenylyl transferase (ATase) -catalyzed adenylylation of glutamine synthetase, which requires the presence of the unmodified form of the regulatory protein PII is enhanced by glutamine and is inhibited by either α-ketoglutarate (α-KG) or the uridylylated form (PII·UMP) of the regulatory protein. PII·UMP and α-KG act synergistically to inhibit this activity. In contrast, the PII·UMP-dependent, ATase-catalyzed deadenylylation of glutamine synthetase requires α-KG and ATP and is inhibited by glutamine or PII and synergistically by glutamine plus PII. The capacity of uridylyl transferase (UTase) to catalyze the uridylylation of PII is dependent on the presence of α-KG and ATP and is inhibited by glutamine. The deuridylylation of PII·UMP by the uridylyl removing enzyme (UR) is enhanced by glutamine but is unaffected by α-KG. However, CMP, UMP, and CoA all inhibit activity at 10^?6m. High concentrations of ATase inhibit both UR and UTase activities, presumably by binding the regulatory protein. Of more than 50 substances that alter the activity of at least one enzyme in the cascade, only α-KG and glutamine affect the activity at every step. This accounts for the observation that glutamine synthetase activity in vivo is very sensitive to the intracellular ratio of α-KG to glutamine.     

Viruses and asthma

Background

Viral respiratory infection has long been known to influence the occurrence of asthma exacerbations. Over the last 20 years much effort has been put into clarifying the role that viral respiratory infections play in the eventual development of asthma.

Scope of review

In this review we give a general background of the role of viruses in the processes of asthma exacerbation and asthma induction. We review recent additions to the literature in the last 3 years with particular focus on clinical and epidemiologic investigations of influenza, rhinovirus, bocavirus, respiratory syncytial virus, and metapneumovirus.

Major conclusions

The development of asthma emerges from a complex interaction of genetic predisposition and environmental factors with viral infection likely playing a significant role in the effect of environment on asthma inception. This article is part of a Special Issue entitled: Biochemistry of Asthma.

General significance

Further understanding of the role that viruses play in asthma exacerbation and inception will contribute to decreased asthma morbidity in the future. This article is part of a Special Issue entitled: Biochemistry of Asthma.     

Electrophysiological interrogation of asymmetric droplet interface bilayers reveals surface-bound alamethicin induces lipid flip-flop

The droplet interface bilayer (DIB) method offers simple control over initial leaflet compositions in model membranes, enabling an experimental path to filling gaps in our knowledge about the interplay between compositional lipid asymmetry, membrane properties, and the behaviors of membrane-active species. Yet, the stability of lipid leaflet asymmetry in DIBs has received very little attention, particularly in the presence of peptides and ion channels that are often studied in DIBs. Herein, we demonstrate for the first time parallel, capacitance-based measurements of intramembrane potential with arrays of asymmetric DIBs assembled in a microfluidic device to characterize the stability of leaflet asymmetry over many hours in the presence and absence of membrane-active peptides. DIBs assembled from opposing monolayers of the ester (DPhPC) and ether (DOPhPC) forms of diphytanoyl-phosphatidylcholine yielded asymmetric bilayers with leaflet compositions that were stable for at least 18?h as indicated by a stable |137?mV| intramembrane potential. In contrast, the addition of surface-bound alamethicin peptides caused a gradual, concentration-dependent decrease in the magnitude of the dipole potential difference. Intermittent current-voltage measurements revealed that alamethicin in asymmetric DIBs also shifts the threshold voltage required to drive peptide insertion and ion channel formation. These outcomes take place over the course of 1 to 5?h after membrane formation, and suggest that alamethicin peptides promote lipid flip-flop, even in the un-inserted, surface-bound state, by disordering lipids in the monolayer to which they bind. Moreover, this methodology establishes the use of parallel electrophysiology for efficiently studying membrane asymmetry in arrays of DIBs.